Kengo Sato, MD - Related publications

Neurosurgery Hamamatsu University, Hamamatsu-shi, Shizuoka-ken, Japan 
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Herndon N, Shelton J, Gerischer L, Ioannidis P, Ninova M, Dönitz J, Waterhouse RM, Liang C, Damm C, Siemanowski J, Kitzmann P, Ulrich J, Dippel S, Oberhofer G, Hu Y, et al. Enhanced genome assembly and a new official gene set for Tribolium castaneum. Bmc Genomics. 21: 47. PMID 31937263 DOI: 10.1186/s12864-019-6394-6   
2020 Li R, He X, Dai C, Zhu H, Lang X, Chen W, Li X, Zhao D, Zhang Y, Han X, Niu T, Zhao Y, Cao R, He R, Lu Z, et al. Gclust: A Parallel Clustering Tool for Microbial Genomic Data. Genomics, Proteomics & Bioinformatics. PMID 31917259 DOI: 10.1016/j.gpb.2018.10.008   
2020 Yelick K, Buluç A, Awan M, Azad A, Brock B, Egan R, Ekanayake S, Ellis M, Georganas E, Guidi G, Hofmeyr S, Selvitopi O, Teodoropol C, Oliker L. The parallelism motifs of genomic data analysis. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 378: 20190394. PMID 31955674 DOI: 10.1098/rsta.2019.0394   
2020 Narayan NR, Weinmaier T, Laserna-Mendieta EJ, Claesson MJ, Shanahan F, Dabbagh K, Iwai S, DeSantis TZ. Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences. Bmc Genomics. 21: 56. PMID 31952477 DOI: 10.1186/s12864-019-6427-1   
2020 Mishra A, Dhanda S, Siwach P, Aggarwal S, Jayaram B. A novel method SEProm for prokaryotic promoter prediction based on DNA structure and energetics. Bioinformatics (Oxford, England). PMID 31909789 DOI: 10.1093/bioinformatics/btz941   
2020 Joly-Lopez Z, Platts AE, Gulko B, Choi JY, Groen SC, Zhong X, Siepel A, Purugganan MD. An inferred fitness consequence map of the rice genome. Nature Plants. PMID 32042156 DOI: 10.1038/s41477-019-0589-3   
2020 Afzal M, Alghamdi SS, Migdadi HH, Khan MA, Nurmansyah, Mirza SB, El-Harty E. Legume genomics and transcriptomics: From classic breeding to modern technologies. Saudi Journal of Biological Sciences. 27: 543-555. PMID 31889880 DOI: 10.1016/j.sjbs.2019.11.018   
2020 Molina-Mora JA, Campos-Sánchez R, Rodríguez C, Shi L, García F. High quality 3C de novo assembly and annotation of a multidrug resistant ST-111 Pseudomonas aeruginosa genome: Benchmark of hybrid and non-hybrid assemblers. Scientific Reports. 10: 1392. PMID 31996747 DOI: 10.1038/s41598-020-58319-6   
2020 Severn-Ellis AA, Scheben A, Neik TX, Saad NSM, Pradhan A, Batley J. Genotyping for Species Identification and Diversity Assessment Using Double-Digest Restriction Site-Associated DNA Sequencing (ddRAD-Seq). Methods in Molecular Biology (Clifton, N.J.). 2107: 159-187. PMID 31893447 DOI: 10.1007/978-1-0716-0235-5_8   
2020 Pyhäjärvi T, Kujala ST, Savolainen O. 275 years of forestry meets genomics in . Evolutionary Applications. 13: 11-30. PMID 31988655 DOI: 10.1111/eva.12809   
2020 Dornbos P, Arkatkar AA, LaPres JJ. An Automated Method To Predict Mouse Gene and Protein Sequences Using Variant Data. G3 (Bethesda, Md.). PMID 31911484 DOI: 10.1534/g3.119.400983   
2020 Santos A, van Aerle R, Barrientos L, Martinez-Urtaza J. Computational methods for 16S metabarcoding studies using Nanopore sequencing data. Computational and Structural Biotechnology Journal. 18: 296-305. PMID 32071706 DOI: 10.1016/j.csbj.2020.01.005   
2020 Montoliu-Nerin M, Sánchez-García M, Bergin C, Grabherr M, Ellis B, Kutschera VE, Kierczak M, Johannesson H, Rosling A. Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei. Scientific Reports. 10: 1303. PMID 31992756 DOI: 10.1038/s41598-020-58025-3   
2020 Waterhouse RM, Aganezov S, Anselmetti Y, Lee J, Ruzzante L, Reijnders MJMF, Feron R, Bérard S, George P, Hahn MW, Howell PI, Kamali M, Koren S, Lawson D, Maslen G, et al. Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies. Bmc Biology. 18: 1. PMID 31898513 DOI: 10.1186/s12915-019-0728-3   
2020 Razo-Mendivil FG, Martínez O, Hayano-Kanashiro C. Compacta: a fast contig clustering tool for de novo assembled transcriptomes. Bmc Genomics. 21: 148. PMID 32046653 DOI: 10.1186/s12864-020-6528-x   
2020 Jain A, Kumar A, Shikhi M, Kumar A, Nair DT, Salunke DM. The structure of MP-4 from Mucuna pruriens at 2.22 Å resolution. Acta Crystallographica. Section F, Structural Biology Communications. 76: 47-57. PMID 32039885 DOI: 10.1107/S2053230X20000199   
2020 Maina S, Zheng L, King S, Aftab M, Nancarrow N, Trębicki P, Rodoni B. Genome Sequence and Phylogeny of a Isolate Obtained from a 14-Year-Old Australian Lentil Sample. Microbiology Resource Announcements. 9. PMID 31919183 DOI: 10.1128/MRA.01437-19   
2020 Goodhead I, Blow F, Brownridge P, Hughes M, Kenny J, Krishna R, McLean L, Pongchaikul P, Beynon R, Darby AC. Large-scale and significant expression from pseudogenes in - a facultative bacterial endosymbiont. Microbial Genomics. PMID 31922467 DOI: 10.1099/mgen.0.000285   
2020 Juan L, Wang Y, Jiang J, Yang Q, Jiang Q, Wang Y. PGsim: A Comprehensive and Highly Customizable Personal Genome Simulator. Frontiers in Bioengineering and Biotechnology. 8: 28. PMID 32047747 DOI: 10.3389/fbioe.2020.00028   
2020 Law W, Warren RL, McCallion AS. Establishment of an eHAP1 human haploid cell line hybrid reference genome assembled from short and long reads. Genomics. PMID 31962144 DOI: 10.1016/j.ygeno.2020.01.009   
2020 Pillai S, Maksemous N, Lam AK. Genome Sequencing in Esophageal Squamous Cell Carcinoma. Methods in Molecular Biology (Clifton, N.J.). 2129: 217-240. PMID 32056181 DOI: 10.1007/978-1-0716-0377-2_17   
2020 Stolarczyk M, Reuter VP, Smith JP, Magee NE, Sheffield NC. Refgenie: a reference genome resource manager. Gigascience. 9. PMID 31995185 DOI: 10.1093/gigascience/giz149   
2020 Kadota M, Nishimura O, Miura H, Tanaka K, Hiratani I, Kuraku S. Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding? Gigascience. 9. PMID 31919520 DOI: 10.1093/gigascience/giz158   
2020 Zhang MJ, Ntranos V, Tse D. Determining sequencing depth in a single-cell RNA-seq experiment. Nature Communications. 11: 774. PMID 32034137 DOI: 10.1038/s41467-020-14482-y   
2020 Wen Y, Lu Q. Multikernel linear mixed model with adaptive lasso for complex phenotype prediction. Statistics in Medicine. PMID 31985088 DOI: 10.1002/sim.8477   
2020 Lee RS, Proulx JF, McIntosh F, Behr MA, Hanage WP. Previously undetected super-spreading of revealed by deep sequencing. Elife. 9. PMID 32014110 DOI: 10.7554/eLife.53245   
2020 Lange S, Engleitner T, Mueller S, Maresch R, Zwiebel M, González-Silva L, Schneider G, Banerjee R, Yang F, Vassiliou GS, Friedrich MJ, Saur D, Varela I, Rad R. Analysis pipelines for cancer genome sequencing in mice. Nature Protocols. PMID 31907453 DOI: 10.1038/s41596-019-0234-7   
2020 Lu L, Zhao J, Li C. High-Quality Genome Assembly and Annotation of the Big-Eye Mandarin Fish (). G3 (Bethesda, Md.). PMID 31953307 DOI: 10.1534/g3.119.400930   
2020 Sun X, Ding Y, Orr MC, Zhang F. Streamlining universal single-copy ortholog and ultraconserved element design: a case study in Collembola. Molecular Ecology Resources. PMID 32065730 DOI: 10.1111/1755-0998.13146   
2020 Xue J, Han T, Zhao Y, Yang H, Zhang G. Complete genome sequence and phylogenetic analysis of novel avastroviruses circulating in China from 2016 to 2018. Virus Research. 197858. PMID 31904408 DOI: 10.1016/j.virusres.2020.197858   
2020 Shahid S, Slotkin RK. The current revolution in transposable element biology enabled by long reads. Current Opinion in Plant Biology. 54: 49-56. PMID 32007731 DOI: 10.1016/j.pbi.2019.12.012   
2020 Aleix-Mata G, Gutiérrez J, Ruiz-Ruano FJ, Lorite P, Marchal JA, Sánchez A. The complete mitochondrial genome of Talpa aquitania (Talpidae; Insectivora), a mole species endemic to northern Spain and southern France. Molecular Biology Reports. PMID 32034626 DOI: 10.1007/s11033-020-05296-8   
2020 Zhang Y, Zhao J, Liang X, Zheng L, Kang Z. A novel narnavirus isolated from the wheat stripe rust fungus Puccinia striiformis f. sp. tritici. Archives of Virology. PMID 32040623 DOI: 10.1007/s00705-020-04545-2   
2020 Naim F, Shand K, Hayashi S, O'Brien M, McGree J, Johnson AAT, Dugdale B, Waterhouse PM. Are the current gRNA ranking prediction algorithms useful for genome editing in plants? Plos One. 15: e0227994. PMID 31978124 DOI: 10.1371/journal.pone.0227994   
2020 Ren J, Lee J, Na D. Recent advances in genetic engineering tools based on synthetic biology. Journal of Microbiology (Seoul, Korea). 58: 1-10. PMID 31898252 DOI: 10.1007/s12275-020-9334-x   
2020 Wang F, Dong Q, Gao Z, Zhou B, Bao X. Characterisation of a novel alphaendornavirus isolated from balloon flower (Platycodon grandiflorus). Archives of Virology. PMID 32056003 DOI: 10.1007/s00705-020-04550-5   
2020 Han JY, Lee IG. Genetic Tests by Next Generation Sequencing in Children with Developmental Delay and/or Intellectual disability. Clinical and Experimental Pediatrics. PMID 32024334 DOI: 10.3345/kjp.2019.00808   
2020 Kumar G, Ertel A, Feldman G, Kupper J, Fortina P. iSeqQC: a tool for expression-based quality control in RNA sequencing. Bmc Bioinformatics. 21: 56. PMID 32054449 DOI: 10.1186/s12859-020-3399-8   
2020 Guan D, McCarthy SA, Wood J, Howe K, Wang Y, Durbin R. Identifying and removing haplotypic duplication in primary genome assemblies. Bioinformatics (Oxford, England). PMID 31971576 DOI: 10.1093/bioinformatics/btaa025   
2020 Hassall KB, Latham K, Robinson J, Gymer A, Goodall R, Merlo D, Marsh SGE, Mayor NP. Extending the sequences of HLA class I alleles without full-length genomic coverage using Single Molecule Real-Time (SMRT) DNA Sequencing. Hla. PMID 31916686 DOI: 10.1111/tan.13800   
2020 Peng Z, Paudel D, Wang L, Luo Z, You Q, Wang J. Methods for Target Enrichment Sequencing via Probe Capture in Legumes. Methods in Molecular Biology (Clifton, N.J.). 2107: 199-231. PMID 31893449 DOI: 10.1007/978-1-0716-0235-5_10   
2020 Lee N, Kim W, Hwang S, Lee Y, Cho S, Palsson B, Cho BK. Thirty complete Streptomyces genome sequences for mining novel secondary metabolite biosynthetic gene clusters. Scientific Data. 7: 55. PMID 32054853 DOI: 10.1038/s41597-020-0395-9   
2020 Hu Q, Maurais EG, Ly P. Cellular and genomic approaches for exploring structural chromosomal rearrangements. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 31933061 DOI: 10.1007/s10577-020-09626-1   
2020 Avelar S, Ramos-Sobrinho R, Conner K, Nichols RL, Lawrence K, Brown JK. Characterization of the Complete Genome and P0 Protein for a Previously Unreported Genotype of Cotton Leafroll Dwarf Virus, an Introduced Polerovirus in the United States. Plant Disease. PDIS06191316RE. PMID 31958248 DOI: 10.1094/PDIS-06-19-1316-RE   
2020 Zhu Z, Wang Y, Zhou X, Yang L, Meng G, Zhang Z. SWAV: a web-based visualization browser for sliding window analysis. Scientific Reports. 10: 149. PMID 31924845 DOI: 10.1038/s41598-019-57038-x   
2020 Malossi CD, Fioratti EG, Cardoso JF, Magro AJ, Kroon EG, Aguiar DM, Borges AMCM, Nogueira MF, Ullmann LS, Araujo JP. High Genomic Variability in Equine Infectious Anemia Virus Obtained from Naturally Infected Horses in Pantanal, Brazil: An Endemic Region Case. Viruses. 12. PMID 32059508 DOI: 10.3390/v12020207   
2020 Shakya M, Ahmed SA, Davenport KW, Flynn MC, Lo CC, Chain PSG. Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life. Scientific Reports. 10: 1723. PMID 32015354 DOI: 10.1038/s41598-020-58356-1   
2020 Park I, Song JH, Yang S, Moon BC. Comparative Analysis of Chloroplast Genomes and Molecular Marker Development for the Identification of Authentic Cimicifugae Rhizoma. Plants (Basel, Switzerland). 9. PMID 32012666 DOI: 10.3390/plants9020157   
2020 Nair HP, Bhat SG. Metagenomic data on bacterial diversity profiling of Arabian sea sediment by amplicon sequencing. Data in Brief. 28: 104791. PMID 31871968 DOI: 10.1016/j.dib.2019.104791   
2020 Borys SM, Younger ST. Identification of functional regulatory elements in the human genome using pooled CRISPR screens. Bmc Genomics. 21: 107. PMID 32005150 DOI: 10.1186/s12864-020-6497-0