Stephen Eglen - Publications

University of Cambridge, Cambridge, England, United Kingdom 
Visual system, Development, Computational modelling

66 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Edinburgh T, Eglen SJ, Ercole A. Causality indices for bivariate time series data: A comparative review of performance. Chaos (Woodbury, N.Y.). 31: 083111. PMID 34470252 DOI: 10.1063/5.0053519  1
2021 Nüst D, Eglen SJ. CODECHECK: an Open Science initiative for the independent execution of computations underlying research articles during peer review to improve reproducibility. F1000research. 10: 253. PMID 34367614 DOI: 10.12688/f1000research.51738.2  1
2021 Edinburgh T, Smielewski P, Czosnyka M, Cabeleira M, Eglen SJ, Ercole A. DeepClean: Self-Supervised Artefact Rejection for Intensive Care Waveform Data Using Deep Generative Learning. Acta Neurochirurgica. Supplement. 131: 235-241. PMID 33839851 DOI: 10.1007/978-3-030-59436-7_45  0.01
2020 Nüst D, Sochat V, Marwick B, Eglen SJ, Head T, Hirst T, Evans BD. Ten simple rules for writing Dockerfiles for reproducible data science. Plos Computational Biology. 16: e1008316. PMID 33170857 DOI: 10.1371/journal.pcbi.1008316  0.01
2020 Keeley PW, Eglen SJ, Reese BE. From Random to Regular: Variation in the Patterning of Retinal Mosaics. The Journal of Comparative Neurology. PMID 32026463 DOI: 10.1002/Cne.24880  1
2019 Hyvärinen T, Hyysalo A, Kapucu FE, Aarnos L, Vinogradov A, Eglen SJ, Ylä-Outinen L, Narkilahti S. Functional characterization of human pluripotent stem cell-derived cortical networks differentiated on laminin-521 substrate: comparison to rat cortical cultures. Scientific Reports. 9: 17125. PMID 31748598 DOI: 10.1038/s41598-019-53647-8  0.01
2019 Cotterill E, Eglen SJ. Burst Detection Methods. Advances in Neurobiology. 22: 185-206. PMID 31073937 DOI: 10.1007/978-3-030-11135-9_8  1
2018 Eglen SJ, Mounce R, Gatto L, Currie AM, Nobis Y. Recent developments in scholarly publishing to improve research practices in the life sciences. Emerging Topics in Life Sciences. 2: 775-778. PMID 33530668 DOI: 10.1042/ETLS20180172  0.01
2018 Gelfman S, Wang Q, Lu YF, Hall D, Bostick CD, Dhindsa R, Halvorsen M, McSweeney KM, Cotterill E, Edinburgh T, Beaumont MA, Frankel WN, Petrovski S, Allen AS, Boland MJ, ... ... Eglen SJ, et al. meaRtools: An R package for the analysis of neuronal networks recorded on microelectrode arrays. Plos Computational Biology. 14: e1006506. PMID 30273353 DOI: 10.1371/Journal.Pcbi.1006506  1
2017 Eglen SJ, Marwick B, Halchenko YO, Hanke M, Sufi S, Gleeson P, Silver RA, Davison AP, Lanyon L, Abrams M, Wachtler T, Willshaw DJ, Pouzat C, Poline JB. Toward standard practices for sharing computer code and programs in neuroscience. Nature Neuroscience. 20: 770-773. PMID 28542156 DOI: 10.1038/Nn.4550  1
2017 Savier E, Eglen SJ, Bathélémy A, Perraut M, Pfrieger FW, Lemke G, Reber M. A molecular mechanism for the topographic alignment of convergent neural maps. Elife. 6. PMID 28322188 DOI: 10.7554/Elife.20470  1
2016 Perez-Riverol Y, Gatto L, Wang R, Sachsenberg T, Uszkoreit J, Leprevost FD, Fufezan C, Ternent T, Eglen SJ, Katz DS, Pollard TJ, Konovalov A, Flight RM, Blin K, Vizcaíno JA. Ten Simple Rules for Taking Advantage of Git and GitHub. Plos Computational Biology. 12: e1004947. PMID 27415786 DOI: 10.1371/Journal.Pcbi.1004947  1
2016 Cotterill E, Charlesworth P, Thomas CW, Paulsen O, Eglen SJ. A comparison of computational methods for detecting bursts in neuronal spike trains and their application to human stem cell-derived neuronal networks. Journal of Neurophysiology. jn.00093.2016. PMID 27098024 DOI: 10.1152/jn.00093.2016  1
2016 Gjorgjieva J, Evers JF, Eglen SJ. Homeostatic Activity-Dependent Tuning of Recurrent Networks for Robust Propagation of Activity. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 36: 3722-34. PMID 27030758 DOI: 10.1523/Jneurosci.2511-15.2016  1
2016 Cotterill E, Hall D, Wallace K, Mundy WR, Eglen SJ, Shafer TJ. Characterization of Early Cortical Neural Network Development in Multiwell Microelectrode Array Plates. Journal of Biomolecular Screening. PMID 27028607 DOI: 10.1177/1087057116640520  1
2016 Leiwe MN, Hendry AC, Bard AD, Eglen SJ, Lowe AS, Thompson ID. Geniculo-Cortical Projection Diversity Revealed within the Mouse Visual Thalamus. Plos One. 11: e0144846. PMID 26727264 DOI: 10.1371/Journal.Pone.0144846  1
2016 Eglen S, Cutts C, Hjorth J, Sterratt D, Willshaw D. On a role for competitions in computational neuroscience F1000research. 5. DOI: 10.7490/F1000Research.1112004.1  0.64
2015 Budd JM, Cuntz H, Eglen SJ, Krieger P. Editorial: Quantitative Analysis of Neuroanatomy. Frontiers in Neuroanatomy. 9: 143. PMID 26617494 DOI: 10.3389/Fnana.2015.00143  1
2015 Hjorth JJ, Savier E, Sterratt DC, Reber M, Eglen SJ. Estimating the location and size of retinal injections from orthogonal images of an intact retina. Bmc Neuroscience. 16: 80. PMID 26590111 DOI: 10.1186/S12868-015-0217-8  1
2015 Charlesworth P, Morton A, Eglen SJ, Komiyama NH, Grant SG. Canalization of genetic and pharmacological perturbations in developing primary neuronal activity patterns. Neuropharmacology. PMID 26211975 DOI: 10.1016/J.Neuropharm.2015.07.027  1
2015 Charlesworth P, Cotterill E, Morton A, Grant SG, Eglen SJ. Quantitative differences in developmental profiles of spontaneous activity in cortical and hippocampal cultures. Neural Development. 10: 1. PMID 25626996 DOI: 10.1186/S13064-014-0028-0  1
2015 Hjorth JJ, Sterratt DC, Cutts CS, Willshaw DJ, Eglen SJ. Quantitative assessment of computational models for retinotopic map formation. Developmental Neurobiology. 75: 641-66. PMID 25367067 DOI: 10.1002/Dneu.22241  1
2014 Cutts CS, Eglen SJ. Detecting pairwise correlations in spike trains: an objective comparison of methods and application to the study of retinal waves. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 14288-303. PMID 25339742 DOI: 10.1523/Jneurosci.2767-14.2014  1
2014 Eglen S. Open access: sharing your data is easier than you think. Nature. 510: 340. PMID 24943946 DOI: 10.1038/510340c  1
2014 Eglen SJ, Weeks M, Jessop M, Simonotto J, Jackson T, Sernagor E. A data repository and analysis framework for spontaneous neural activity recordings in developing retina. Gigascience. 3: 3. PMID 24666584 DOI: 10.1186/2047-217X-3-3  1
2014 Schottdorf M, Eglen SJ, Wolf F, Keil W. Can retinal ganglion cell dipoles seed iso-orientation domains in the visual cortex? Plos One. 9: e86139. PMID 24475081 DOI: 10.1371/Journal.Pone.0086139  1
2014 Maccione A, Hennig MH, Gandolfo M, Muthmann O, van Coppenhagen J, Eglen SJ, Berdondini L, Sernagor E. Following the ontogeny of retinal waves: pan-retinal recordings of population dynamics in the neonatal mouse. The Journal of Physiology. 592: 1545-63. PMID 24366261 DOI: 10.1113/Jphysiol.2013.262840  1
2014 Smith L, Austin J, Eglen S, Jackson T, Jessop M, Liang B, Weeks M, Sernagor E. The CARMEN data sharing portal project: what have we learned? F1000research. 5. DOI: 10.7490/F1000Research.1096553.1  1
2014 McKiernan EC, Herrera-Valdez MA, Madan CR, Desjardins-Proulx P, Eklund A, Kubke MF, Holcombe AO, Steel G, Marrone DF, Oppenheim C, Faulkes Z, Tennant JP, Gardner NM, Thirumalai A, Park T, ... ... Eglen S, et al. Open letter to the Society for Neuroscience The Winnower. DOI: 10.15200/Winn.140865.54468  1
2013 Gjorgjieva J, Berni J, Evers JF, Eglen SJ. Neural circuits for peristaltic wave propagation in crawling Drosophila larvae: analysis and modeling. Frontiers in Computational Neuroscience. 7: 24. PMID 23576980 DOI: 10.3389/Fncom.2013.00024  1
2013 Teeters J, Benda J, Davison AP, Eglen S, Gerhard S, Gerkin RC, Grewe J, Harris K, Jackson T, Mouček R, Pröpper R, Sessions HL, Smith LS, Sobolev A, Sommer F, et al. Considerations for developing a standard for storing electrophysiology data in HDF5 F1000research. 4. DOI: 10.7490/F1000Research.1094290.1  1
2012 Hore VR, Troy JB, Eglen SJ. Parasol cell mosaics are unlikely to drive the formation of structured orientation maps in primary visual cortex. Visual Neuroscience. 29: 283-99. PMID 23110776 DOI: 10.1017/S0952523812000338  1
2012 Chabrol FP, Eglen SJ, Sernagor E. GABAergic control of retinal ganglion cell dendritic development. Neuroscience. 227: 30-43. PMID 23022539 DOI: 10.1016/J.Neuroscience.2012.09.040  1
2012 Keeley PW, Sliff BJ, Lee SC, Fuerst PG, Burgess RW, Eglen SJ, Reese BE. Neuronal clustering and fasciculation phenotype in Dscam- and Bax-deficient mouse retinas. The Journal of Comparative Neurology. 520: 1349-64. PMID 22396220 DOI: 10.1002/Cne.23033  1
2012 Eglen SJ. Cellular spacing: Analysis and modelling of retinal mosaics Computational Systems Neurobiology. 365-385. DOI: 10.1007/978-94-007-3858-4_12  1
2011 Gjorgjieva J, Eglen SJ. Modeling developmental patterns of spontaneous activity. Current Opinion in Neurobiology. 21: 679-84. PMID 21684148 DOI: 10.1016/J.Conb.2011.05.015  1
2009 Gjorgjieva J, Toyoizumi T, Eglen SJ. Burst-time-dependent plasticity robustly guides ON/OFF segregation in the lateral geniculate nucleus. Plos Computational Biology. 5: e1000618. PMID 20041207 DOI: 10.1371/Journal.Pcbi.1000618  1
2009 Godfrey KB, Eglen SJ, Swindale NV. A multi-component model of the developing retinocollicular pathway incorporating axonal and synaptic growth. Plos Computational Biology. 5: e1000600. PMID 20011124 DOI: 10.1371/Journal.Pcbi.1000600  1
2009 Godfrey KB, Eglen SJ. Theoretical models of spontaneous activity generation and propagation in the developing retina. Molecular Biosystems. 5: 1527-35. PMID 19763323 DOI: 10.1039/B907213F  1
2009 Eglen SJ. A quick guide to teaching R programming to computational biology students. Plos Computational Biology. 5: e1000482. PMID 19714211 DOI: 10.1371/journal.pcbi.1000482  1
2009 Eglen SJ, Gjorgjieva J. Self-organization in the developing nervous system: theoretical models. Hfsp Journal. 3: 176-85. PMID 19639040 DOI: 10.2976/1.3079539  1
2008 Eglen SJ, Lofgreen DD, Raven MA, Reese BE. Analysis of spatial relationships in three dimensions: tools for the study of nerve cell patterning. Bmc Neuroscience. 9: 68. PMID 18644136 DOI: 10.1186/1471-2202-9-68  1
2008 Eglen SJ, Wong JC. Spatial constraints underlying the retinal mosaics of two types of horizontal cells in cat and macaque. Visual Neuroscience. 25: 209-14. PMID 18334045 DOI: 10.1017/S0952523808080176  1
2008 Kronhaus DM, Eglen SJ. The role of simplifying models in neuroscience: Modelling structure and function Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5151: 33-44. DOI: 10.1007/978-3-540-92191-2_4  1
2006 Eglen SJ. Development of regular cellular spacing in the retina: theoretical models. Mathematical Medicine and Biology : a Journal of the Ima. 23: 79-99. PMID 16510463 DOI: 10.1093/imammb/dql003  1
2006 Eglen SJ, Galli-Resta L. Retinal mosaics Retinal Development. 193-207. DOI: 10.1017/CBO9780511541629.012  1
2006 Sernagor E, Eglen S, Harris B, Wong R. Retinal development Retinal Development. 1-391. DOI: 10.1017/CBO9780511541629  1
2005 Eglen SJ, Diggle PJ, Troy JB. Homotypic constraints dominate positioning of on- and off-center beta retinal ganglion cells. Visual Neuroscience. 22: 859-71. PMID 16469193 DOI: 10.1017/S0952523805226147  1
2005 Kishi M, Kummer TT, Eglen SJ, Sanes JR. LL5beta: a regulator of postsynaptic differentiation identified in a screen for synaptically enriched transcripts at the neuromuscular junction. The Journal of Cell Biology. 169: 355-66. PMID 15851520 DOI: 10.1083/Jcb.200411012  1
2003 Eglen SJ, Demas J, Wong RO. Mapping by waves. Patterned spontaneous activity regulates retinotopic map refinement. Neuron. 40: 1053-5. PMID 14687538 DOI: 10.1016/S0896-6273(03)00808-0  1
2003 Eglen SJ, Raven MA, Tamrazian E, Reese BE. Dopaminergic amacrine cells in the inner nuclear layer and ganglion cell layer comprise a single functional retinal mosaic. The Journal of Comparative Neurology. 466: 343-55. PMID 14556292 DOI: 10.1002/Cne.10891  1
2003 Sernagor E, Young C, Eglen SJ. Developmental modulation of retinal wave dynamics: shedding light on the GABA saga. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 23: 7621-9. PMID 12930801 DOI: 10.1523/Jneurosci.23-20-07621.2003  1
2003 Raven MA, Eglen SJ, Ohab JJ, Reese BE. Determinants of the exclusion zone in dopaminergic amacrine cell mosaics. The Journal of Comparative Neurology. 461: 123-36. PMID 12722109 DOI: 10.1002/Cne.10693  1
2003 Demas J, Eglen SJ, Wong RO. Developmental loss of synchronous spontaneous activity in the mouse retina is independent of visual experience. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 23: 2851-60. PMID 12684472  1
2002 Lee CW, Eglen SJ, Wong RO. Segregation of ON and OFF retinogeniculate connectivity directed by patterned spontaneous activity. Journal of Neurophysiology. 88: 2311-21. PMID 12424272 DOI: 10.1152/jn.00372.2002  1
2002 Eglen SJ, Willshaw DJ. Influence of cell fate mechanisms upon retinal mosaic formation: a modelling study. Development (Cambridge, England). 129: 5399-408. PMID 12403711 DOI: 10.1242/dev.00118  1
2001 Sernagor E, Eglen SJ, Wong RO. Development of retinal ganglion cell structure and function. Progress in Retinal and Eye Research. 20: 139-74. PMID 11173250 DOI: 10.1016/S1350-9462(00)00024-0  1
2000 Eglen SJ, van Ooyen A, Willshaw DJ. Lateral cell movement driven by dendritic interactions is sufficient to form retinal mosaics. Network (Bristol, England). 11: 103-18. PMID 10735531  1
2000 Sernagor E, Eglen SJ, O'Donovan MJ. Differential effects of acetylcholine and glutamate blockade on the spatiotemporal dynamics of retinal waves. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 20: RC56. PMID 10632622 DOI: 10.1523/Jneurosci.20-02-J0004.2000  1
1999 Eglen SJ. The role of retinal waves and synaptic normalization in retinogeniculate development. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 354: 497-506. PMID 10212494 DOI: 10.1098/rstb.1999.0400  1
1999 Eglen SJ, van Ooyen A. Modelling retinal mosaic development with dendritic outgrowth and lateral cell movement Iee Conference Publication. 1: 377-382.  1
1998 Collin C, Eglen S. An introduction to natural computation. Trends in Cognitive Sciences. 2: 235-6. PMID 21227179 DOI: 10.1016/S1364-6613(98)01182-6  0.01
1997 Eglen S, Bray A, Stone J. Unsupervised discovery of invariances Network: Computation in Neural Systems. 8: 441-452. DOI: 10.1088/0954-898X_8_4_006  1
1996 Tate AR, Watson D, Eglen S, Arvanitis TN, Thomas EL, Bell JD. Automated feature extraction for the classification of human in vivo 13C NMR spectra using statistical pattern recognition and wavelets. Magnetic Resonance in Medicine. 35: 834-40. PMID 8744010 DOI: 10.1002/Mrm.1910350608  1
1994 Walker NP, Eglen SJ, Lawrence BA. Image compression using neural networks Gec Journal of Research. 11: 66-75.  1
1992 Eglen SJ, Hill AG, Lazare FJ, Walker NP. Using neural networks Gec Review. 7: 146-155.  1
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