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Gregor Rot - Publications

Affiliations: 
Faculty of Computer and Information Science University of Ljubljana, Ljubljana, Ljubljana, Slovenia 
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15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Bryce-Smith S, Burri D, Gazzara MR, Herrmann CJ, Danecka W, Fitzsimmons CM, Wan YK, Zhuang F, Fansler MM, Fernández JM, Ferret M, Gonzalez-Uriarte A, Haynes S, Herdman C, Kanitz A, ... ... Rot G, et al. Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data. Rna (New York, N.Y.). PMID 37816550 DOI: 10.1261/rna.079849.123  0.328
2023 Bryce-Smith S, Burri D, Gazzara MR, Herrmann CJ, Danecka W, Fitzsimmons CM, Wan YK, Zhuang F, Fansler MM, Fernández JM, Ferret M, Gonzalez-Uriarte A, Haynes S, Herdman C, Kanitz A, ... ... Rot G, et al. Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data. Biorxiv : the Preprint Server For Biology. PMID 37425672 DOI: 10.1101/2023.06.23.546284  0.328
2023 Winstanley-Zarach P, Rot G, Kuba S, Smagul A, Peffers MJ, Tew SR. Analysis of RNA Polyadenylation in Healthy and Osteoarthritic Human Articular Cartilage. International Journal of Molecular Sciences. 24. PMID 37047586 DOI: 10.3390/ijms24076611  0.316
2022 Spruce T, Plass M, Gohr A, Ray D, Martínez de Lagrán M, Rot G, Nóvoa A, Burguera D, Permanyer J, Miret M, Zheng H, Swanson MS, Morris Q, Mallo M, Dierssen M, et al. The X-linked splicing regulator MBNL3 has been co-opted to restrict placental growth in eutherians. Plos Biology. 20: e3001615. PMID 35476669 DOI: 10.1371/journal.pbio.3001615  0.345
2019 Modic M, Grosch M, Rot G, Schirge S, Lepko T, Yamazaki T, Lee FCY, Rusha E, Shaposhnikov D, Palo M, Merl-Pham J, Cacchiarelli D, Rogelj B, Hauck SM, von Mering C, et al. Cross-Regulation between TDP-43 and Paraspeckles Promotes Pluripotency-Differentiation Transition. Molecular Cell. PMID 31047794 DOI: 10.1016/J.Molcel.2019.03.041  0.373
2017 Rot G, Wang Z, Huppertz I, Modic M, Lenče T, Hallegger M, Haberman N, Curk T, von Mering C, Ule J. High-Resolution RNA Maps Suggest Common Principles of Splicing and Polyadenylation Regulation by TDP-43. Cell Reports. 19: 1056-1067. PMID 28467899 DOI: 10.1016/J.Celrep.2017.04.028  0.46
2014 Cereda M, Pozzoli U, Rot G, Juvan P, Schweitzer A, Clark T, Ule J. RNAmotifs: prediction of multivalent RNA motifs that control alternative splicing. Genome Biology. 15: R20. PMID 24485098 DOI: 10.1186/Gb-2014-15-1-R20  0.461
2013 Miranda ER, Rot G, Toplak M, Santhanam B, Curk T, Shaulsky G, Zupan B. Transcriptional profiling of Dictyostelium with RNA sequencing. Methods in Molecular Biology (Clifton, N.J.). 983: 139-71. PMID 23494306 DOI: 10.1007/978-1-62703-302-2_8  0.411
2012 Wagnon JL, Briese M, Sun W, Mahaffey CL, Curk T, Rot G, Ule J, Frankel WN. CELF4 regulates translation and local abundance of a vast set of mRNAs, including genes associated with regulation of synaptic function. Plos Genetics. 8: e1003067. PMID 23209433 DOI: 10.1371/Journal.Pgen.1003067  0.355
2012 Rogelj B, Easton LE, Bogu GK, Stanton LW, Rot G, Curk T, Zupan B, Sugimoto Y, Modic M, Haberman N, Tollervey J, Fujii R, Takumi T, Shaw CE, Ule J. Widespread binding of FUS along nascent RNA regulates alternative splicing in the brain. Scientific Reports. 2: 603. PMID 22934129 DOI: 10.1038/Srep00603  0.454
2011 Tollervey JR, Wang Z, Hortobágyi T, Witten JT, Zarnack K, Kayikci M, Clark TA, Schweitzer AC, Rot G, Curk T, Zupan B, Rogelj B, Shaw CE, Ule J. Analysis of alternative splicing associated with aging and neurodegeneration in the human brain. Genome Research. 21: 1572-82. PMID 21846794 DOI: 10.1101/Gr.122226.111  0.301
2011 Konig J, Zarnack K, Rot G, Curk T, Kayikci M, Zupan B, Turner DJ, Luscombe NM, Ule J. iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution. Journal of Visualized Experiments : Jove. PMID 21559008 DOI: 10.3791/2638  0.481
2011 Tollervey JR, Curk T, Rogelj B, Briese M, Cereda M, Kayikci M, König J, Hortobágyi T, Nishimura AL, Zupunski V, Patani R, Chandran S, Rot G, Zupan B, Shaw CE, et al. Characterizing the RNA targets and position-dependent splicing regulation by TDP-43. Nature Neuroscience. 14: 452-8. PMID 21358640 DOI: 10.1038/Nn.2778  0.458
2010 Wang Z, Kayikci M, Briese M, Zarnack K, Luscombe NM, Rot G, Zupan B, Curk T, Ule J. iCLIP predicts the dual splicing effects of TIA-RNA interactions. Plos Biology. 8: e1000530. PMID 21048981 DOI: 10.1371/Journal.Pbio.1000530  0.445
2010 König J, Zarnack K, Rot G, Curk T, Kayikci M, Zupan B, Turner DJ, Luscombe NM, Ule J. iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution. Nature Structural & Molecular Biology. 17: 909-15. PMID 20601959 DOI: 10.1038/Nsmb.1838  0.312
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