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Nianjun Liu, Ph.D. - Publications

Affiliations: 
2005 Yale University, New Haven, CT 
Area:
Biostatistics Biology, Genetics
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46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Yan Q, Weeks DE, Tiwari HK, Yi N, Zhang K, Gao G, Lin WY, Lou XY, Chen W, Liu N. Rare-Variant Kernel Machine Test for Longitudinal Data from Population and Family Samples. Human Heredity. 80: 126-138. PMID 27161037 DOI: 10.1159/000445057  0.367
2015 Yan Q, Weeks DE, Celedón JC, Tiwari HK, Li B, Wang X, Lin WY, Lou XY, Gao G, Chen W, Liu N. Associating Multivariate Quantitative Phenotypes with Genetic Variants in Family Samples with a Novel Kernel Machine Regression Method. Genetics. PMID 26482791 DOI: 10.1534/Genetics.115.178590  0.392
2015 Chen W, Ren C, Qin H, Archer KJ, Ouyang W, Liu N, Chen X, Luo X, Zhu X, Sun S, Gao G. A Generalized Sequential Bonferroni Procedure for GWAS in Admixed Populations Incorporating Admixture Mapping Information into Association Tests. Human Heredity. 79: 80-92. PMID 26087776 DOI: 10.1159/000381474  0.341
2015 Limdi NA, Brown TM, Yan Q, Thigpen JL, Shendre A, Liu N, Hill CE, Arnett DK, Beasley TM. Race influences warfarin dose changes associated with genetic factors. Blood. 126: 539-45. PMID 26024874 DOI: 10.1182/Blood-2015-02-627042  0.327
2015 Yan Q, Tiwari HK, Yi N, Gao G, Zhang K, Lin WY, Lou XY, Cui X, Liu N. A Sequence Kernel Association Test for Dichotomous Traits in Family Samples under a Generalized Linear Mixed Model. Human Heredity. 79: 60-8. PMID 25791389 DOI: 10.1159/000375409  0.338
2015 Zhi D, Liu N, Zhang K. On the design and analysis of next-generation sequencing genotyping for a cohort with haplotype-informative reads. Methods (San Diego, Calif.). 79: 41-6. PMID 25644447 DOI: 10.1016/J.Ymeth.2015.01.016  0.353
2014 Xu HM, Sun XW, Qi T, Lin WY, Liu N, Lou XY. Multivariate dimensionality reduction approaches to identify gene-gene and gene-environment interactions underlying multiple complex traits. Plos One. 9: e108103. PMID 25259584 DOI: 10.1371/Journal.Pone.0108103  0.377
2014 Wu J, Chen GB, Zhi D, Liu N, Zhang K. A hidden Markov model for haplotype inference for present-absent data of clustered genes using identified haplotypes and haplotype patterns. Frontiers in Genetics. 5: 267. PMID 25161663 DOI: 10.3389/Fgene.2014.00267  0.376
2014 Yan Q, Tiwari HK, Yi N, Lin WY, Gao G, Lou XY, Cui X, Liu N. Kernel-machine testing coupled with a rank-truncation method for genetic pathway analysis. Genetic Epidemiology. 38: 447-56. PMID 24849109 DOI: 10.1002/Gepi.21813  0.42
2014 Lin WY, Lou XY, Gao G, Liu N. Rare variant association testing by adaptive combination of P-values. Plos One. 9: e85728. PMID 24454922 DOI: 10.1371/Journal.Pone.0085728  0.395
2014 Chen GB, Liu N, Klimentidis YC, Zhu X, Zhi D, Wang X, Lou XY. A unified GMDR method for detecting gene-gene interactions in family and unrelated samples with application to nicotine dependence. Human Genetics. 133: 139-50. PMID 24057800 DOI: 10.1007/S00439-013-1361-9  0.373
2014 Li P, Tiwari HK, Lin WY, Allison DB, Chung WK, Leibel RL, Yi N, Liu N. Genetic association analysis of 30 genes related to obesity in a European American population International Journal of Obesity. 38: 724-729. DOI: 10.1038/Ijo.2013.140  0.367
2013 Perera MA, Cavallari LH, Limdi NA, Gamazon ER, Konkashbaev A, Daneshjou R, Pluzhnikov A, Crawford DC, Wang J, Liu N, Tatonetti N, Bourgeois S, Takahashi H, Bradford Y, Burkley BM, et al. Genetic variants associated with warfarin dose in African-American individuals: a genome-wide association study. Lancet. 382: 790-6. PMID 23755828 DOI: 10.1016/S0140-6736(13)60681-9  0.345
2013 Lin WY, Yi N, Lou XY, Zhi D, Zhang K, Gao G, Tiwari HK, Liu N. Haplotype kernel association test as a powerful method to identify chromosomal regions harboring uncommon causal variants. Genetic Epidemiology. 37: 560-70. PMID 23740760 DOI: 10.1002/Gepi.21740  0.448
2013 Chen W, Chen X, Archer KJ, Liu N, Li Q, Zhao Z, Sun S, Gao G. A rapid association test procedure robust under different genetic models accounting for population stratification. Human Heredity. 75: 23-33. PMID 23571404 DOI: 10.1159/000350109  0.344
2012 Lin WY, Liu N. Reducing bias of allele frequency estimates by modeling SNP genotype data with informative missingness. Frontiers in Genetics. 3: 107. PMID 22719749 DOI: 10.3389/Fgene.2012.00107  0.412
2012 Lin WY, Yi N, Zhi D, Zhang K, Gao G, Tiwari HK, Liu N. Haplotype-based methods for detecting uncommon causal variants with common SNPs. Genetic Epidemiology. 36: 572-82. PMID 22706849 DOI: 10.1002/Gepi.21650  0.398
2012 Lin WY, Tiwari HK, Gao G, Zhang K, Arcaroli JJ, Abraham E, Liu N. Similarity-based multimarker association tests for continuous traits. Annals of Human Genetics. 76: 246-60. PMID 22497480 DOI: 10.1111/J.1469-1809.2012.00706.X  0.381
2012 Zhi D, Wu J, Liu N, Zhang K. Genotype calling from next-generation sequencing data using haplotype information of reads. Bioinformatics (Oxford, England). 28: 938-46. PMID 22285565 DOI: 10.1093/Bioinformatics/Bts047  0.341
2012 Gao G, Kang G, Wang J, Chen W, Qin H, Jiang B, Li Q, Sun C, Liu N, Archer KJ, Allison DB. A generalized sequential Bonferroni procedure using smoothed weights for genome-wide association studies incorporating information on Hardy-Weinberg disequilibrium among cases. Human Heredity. 73: 1-13. PMID 22212195 DOI: 10.1159/000332916  0.327
2011 Chen W, Gao X, Wang J, Sun C, Wan W, Zhi D, Liu N, Chen X, Gao G. Evaluation of association tests for rare variants using simulated data sets in the Genetic Analysis Workshop 17 data. Bmc Proceedings. 5: S86. PMID 22373475 DOI: 10.1186/1753-6561-5-S9-S86  0.418
2011 Lin WY, Zhang B, Yi N, Gao G, Liu N. Evaluation of pooled association tests for rare variant identification. Bmc Proceedings. 5: S118. PMID 22373333 DOI: 10.1186/1753-6561-5-S9-S118  0.418
2011 Zhang B, Zhi D, Zhang K, Gao G, Limdi NN, Liu N. Practical Consideration of Genotype Imputation: Sample Size, Window Size, Reference Choice, and Untyped Rate. Statistics and Its Interface. 4: 339-352. PMID 22308193 DOI: 10.4310/Sii.2011.V4.N3.A8  0.306
2011 Liu N, Zhao H, Patki A, Limdi NA, Allison DB. Controlling Population Structure in Human Genetic Association Studies with Samples of Unrelated Individuals. Statistics and Its Interface. 4: 317-326. PMID 22308192 DOI: 10.4310/Sii.2011.V4.N3.A6  0.375
2011 Yi N, Liu N, Zhi D, Li J. Hierarchical generalized linear models for multiple groups of rare and common variants: jointly estimating group and individual-variant effects. Plos Genetics. 7: e1002382. PMID 22144906 DOI: 10.1371/Journal.Pgen.1002382  0.384
2010 Limdi NA, Wadelius M, Cavallari L, Eriksson N, Crawford DC, Lee MT, Chen CH, Motsinger-Reif A, Sagreiya H, Liu N, Wu AH, Gage BF, Jorgensen A, Pirmohamed M, Shin JG, et al. Warfarin pharmacogenetics: a single VKORC1 polymorphism is predictive of dose across 3 racial groups. Blood. 115: 3827-34. PMID 20203262 DOI: 10.1182/Blood-2009-12-255992  0.31
2009 Liu N, Bucala R, Zhao H. Modeling Informatively Missing Genotypes in Haplotype Analysis. Communications in Statistics: Theory and Methods. 38: 3445-3460. PMID 20052310 DOI: 10.1080/03610920802696588  0.415
2009 Kang G, Childers DK, Liu N, Zhang K, Gao G. Genome-wide association studies of rheumatoid arthritis data via multiple hypothesis testing methods for correlated tests. Bmc Proceedings. 3: S38. PMID 20018029 DOI: 10.1186/1753-6561-3-S7-S38  0.39
2009 Childers DK, Kang G, Liu N, Gao G, Zhang K. Application of imputation methods to the analysis of rheumatoid arthritis data in genome-wide association studies. Bmc Proceedings. 3: S24. PMID 20018014 DOI: 10.1186/1753-6561-3-S7-S24  0.427
2009 Chung WK, Patki A, Matsuoka N, Boyer BB, Liu N, Musani SK, Goropashnaya AV, Tan PL, Katsanis N, Johnson SB, Gregersen PK, Allison DB, Leibel RL, Tiwari HK. Analysis of 30 genes (355 SNPS) related to energy homeostasis for association with adiposity in European-American and Yup'ik Eskimo populations. Human Heredity. 67: 193-205. PMID 19077438 DOI: 10.1159/000181158  0.303
2009 Liu N, Zhang D, Zhao H. Genotyping error detection in samples of unrelated individuals without replicate genotyping. Human Heredity. 67: 154-62. PMID 19077433 DOI: 10.1159/000181153  0.32
2008 Limdi NA, Beasley TM, Crowley MR, Goldstein JA, Rieder MJ, Flockhart DA, Arnett DK, Acton RT, Liu N. VKORC1 polymorphisms, haplotypes and haplotype groups on warfarin dose among African-Americans and European-Americans. Pharmacogenomics. 9: 1445-58. PMID 18855533 DOI: 10.2217/14622416.9.10.1445  0.321
2008 Liu N, Zhang K, Zhao H. Haplotype-association analysis. Advances in Genetics. 60: 335-405. PMID 18358327 DOI: 10.1016/S0065-2660(07)00414-2  0.448
2008 Kelley JM, Hughes LB, Feng R, Liu N, Padilla MA, Vaughan LK, Bridges SL. Evaluating linkage disequilibrium and recombination provides a haplotype-tagging SNP panel of the major histocompatibility complex in African Americans. Genes and Immunity. 9: 271-3. PMID 18305489 DOI: 10.1038/Gene.2008.6  0.407
2007 Musani SK, Shriner D, Liu N, Feng R, Coffey CS, Yi N, Tiwari HK, Allison DB. Detection of gene x gene interactions in genome-wide association studies of human population data. Human Heredity. 63: 67-84. PMID 17283436 DOI: 10.1159/000099179  0.333
2006 Wu SP, Leng L, Feng Z, Liu N, Zhao H, McDonald C, Lee A, Arnett FC, Gregersen PK, Mayes MD, Bucala R. Macrophage migration inhibitory factor promoter polymorphisms and the clinical expression of scleroderma. Arthritis and Rheumatism. 54: 3661-9. PMID 17075815 DOI: 10.1002/Art.22179  0.351
2006 Redden DT, Divers J, Vaughan LK, Tiwari HK, Beasley TM, Fernández JR, Kimberly RP, Feng R, Padilla MA, Liu N, Miller MB, Allison DB. Regional admixture mapping and structured association testing: conceptual unification and an extensible general linear model. Plos Genetics. 2: e137. PMID 16934005 DOI: 10.1371/Journal.Pgen.0020137  0.387
2006 Liu N, Zhao H. A non-parametric approach to population structure inference using multilocus genotypes. Human Genomics. 2: 353-64. PMID 16848973 DOI: 10.1186/1479-7364-2-6-353  0.349
2006 Wu B, Liu N, Zhao H. PSMIX: an R package for population structure inference via maximum likelihood method. Bmc Bioinformatics. 7: 317. PMID 16792813 DOI: 10.1186/1471-2105-7-317  0.356
2006 Liu N, Beerman I, Lifton R, Zhao H. Haplotype analysis in the presence of informatively missing genotype data Genetic Epidemiology. 30: 290-300. PMID 16528706 DOI: 10.1002/Gepi.20144  0.421
2005 Huang S, Wang S, Liu N, Chen L, Oh C, Zhao H. Whole-genome association analysis to identify markers associated with recombination rates using single-nucleotide polymorphisms and microsatellites. Bmc Genetics. 6: S51. PMID 16451663 DOI: 10.1186/1471-2156-6-S1-S51  0.422
2005 Wang S, Huang S, Liu N, Chen L, Oh C, Zhao H. Whole-genome linkage analysis in mapping alcoholism genes using single-nucleotide polymorphisms and microsatellites. Bmc Genetics. 6: S28. PMID 16451637 DOI: 10.1186/1471-2156-6-S1-S28  0.389
2005 Liu N, Chen L, Wang S, Oh C, Zhao H. Comparison of single-nucleotide polymorphisms and microsatellites in inference of population structure. Bmc Genetics. 6: S26. PMID 16451635 DOI: 10.1186/1471-2156-6-S1-S26  0.414
2005 Chen L, Liu N, Wang S, Oh C, Carriero NJ, Zhao H. Whole-genome association studies on alcoholism comparing different phenotypes using single-nucleotide polymorphisms and microsatellites. Bmc Genetics. 6: S130. PMID 16451589 DOI: 10.1186/1471-2156-6-S1-S130  0.433
2005 Oh C, Wang S, Liu N, Chen L, Zhao H. A Bayesian genome screening of maximum number of drinks as an alcoholism phenotype with the new Haseman-Elston method. Bmc Genetics. 6: S116. PMID 16451573 DOI: 10.1186/1471-2156-6-S1-S116  0.376
2004 Liu N, Sawyer SL, Mukherjee N, Pakstis AJ, Kidd JR, Kidd KK, Brookes AJ, Zhao H. Haplotype block structures show significant variation among populations. Genetic Epidemiology. 27: 385-400. PMID 15389924 DOI: 10.1002/Gepi.20026  0.367
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