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Benjamin A. Logsdon - Publications

Affiliations: 
Biological Statistics and Computational Biology Cornell University, Ithaca, NY, United States 
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Prater KE, Green KJ, Mamde S, Sun W, Cochoit A, Smith CL, Chiou KL, Heath L, Rose SE, Wiley J, Keene CD, Kwon RY, Snyder-Mackler N, Blue EE, Logsdon B, et al. Human microglia show unique transcriptional changes in Alzheimer's disease. Nature Aging. PMID 37248328 DOI: 10.1038/s43587-023-00424-y  0.301
2021 Li Y, Haber A, Preuss C, John C, Uyar A, Yang HS, Logsdon BA, Philip V, Karuturi RKM, Carter GW. Transfer learning-trained convolutional neural networks identify novel MRI biomarkers of Alzheimer's disease progression. Alzheimer's & Dementia (Amsterdam, Netherlands). 13: e12140. PMID 34027015 DOI: 10.1002/dad2.12140  0.309
2021 Gockley J, Montgomery KS, Poehlman WL, Wiley JC, Liu Y, Gerasimov E, Greenwood AK, Sieberts SK, Wingo AP, Wingo TS, Mangravite LM, Logsdon BA. Multi-tissue neocortical transcriptome-wide association study implicates 8 genes across 6 genomic loci in Alzheimer's disease. Genome Medicine. 13: 76. PMID 33947463 DOI: 10.1186/s13073-021-00890-2  0.338
2020 Preuss C, Pandey R, Piazza E, Fine A, Uyar A, Perumal T, Garceau D, Kotredes KP, Williams H, Mangravite LM, Lamb BT, Oblak AL, Howell GR, Sasner M, Logsdon BA, et al. A novel systems biology approach to evaluate mouse models of late-onset Alzheimer's disease. Molecular Neurodegeneration. 15: 67. PMID 33172468 DOI: 10.1186/s13024-020-00412-5  0.338
2020 Wan YW, Al-Ouran R, Mangleburg CG, Perumal TM, Lee TV, Allison K, Swarup V, Funk CC, Gaiteri C, Allen M, Wang M, Neuner SM, Kaczorowski CC, Philip VM, Howell GR, ... ... Logsdon BA, et al. Meta-Analysis of the Alzheimer's Disease Human Brain Transcriptome and Functional Dissection in Mouse Models. Cell Reports. 32: 107908. PMID 32668255 DOI: 10.1016/J.Celrep.2020.107908  0.403
2020 Milind N, Preuss C, Haber A, Ananda G, Mukherjee S, John C, Shapley S, Logsdon BA, Crane PK, Carter GW. Transcriptomic stratification of late-onset Alzheimer's cases reveals novel genetic modifiers of disease pathology. Plos Genetics. 16: e1008775. PMID 32492070 DOI: 10.1371/Journal.Pgen.1008775  0.441
2019 Mukherjee S, Perumal TM, Daily K, Sieberts SK, Omberg L, Preuss C, Carter GW, Mangravite LM, Logsdon BA. Identifying and ranking potential driver genes of Alzheimer's disease using multiview evidence aggregation. Bioinformatics (Oxford, England). 35: i568-i576. PMID 31510680 DOI: 10.1093/Bioinformatics/Btz365  0.419
2019 Green K, Blue E, Logsdon BA, Rolf B, Rose S, Knupp A, Frankowski H, Braggin JE, Martinez RA, Dorschner M, Young JE, Keene CDD, Garden GA, Jayadev S. P4-479: Methods To Assess Cell-Type-Specific, Biological Networks Of Alzheimer'S Disease Alzheimers & Dementia. 15. DOI: 10.1016/J.Jalz.2019.08.025  0.367
2019 Mangleburg CG, Wan Y, Al-Ouran R, Lee TV, Allison KS, Logsdon BA, Mangravite LM, Liu Z, Shulman JM. O4-10-03: Functional Dissection Of Alzheimer'S Disease Brain Gene Expression Signatures In Humans And Mouse Models Alzheimers & Dementia. 15. DOI: 10.1016/J.Jalz.2019.06.4796  0.381
2019 Logsdon BA, Greenwood AK, Daily K, Leanza Z, Woo KH, Suver C, Montgomery K, Mukherjee S, Sieberts SK, Peters MA, Omberg L, Mangravite LM. P4-120: COMMUNITY-POWERED, RADICALLY OPEN TECHNOLOGIES TO ACCELERATE ALZHEIMER'S DISEASE THERAPEUTIC DISCOVERY Alzheimer's & Dementia. 15: P1322-P1322. DOI: 10.1016/J.Jalz.2019.06.3781  0.326
2019 Mukherjee S, Preuss C, Greenwood AK, Jayadev S, Garden GA, Carter GW, Mangravite LM, Logsdon BA. P4-119: MOLECULAR ESTIMATION OF ALZHEIMER'S DISEASE PROGRESSION Alzheimer's & Dementia. 15: P1321-P1322. DOI: 10.1016/J.Jalz.2019.06.3780  0.365
2019 Greenwood AK, Daily K, Mukherjee S, Perumal TM, Woo KH, Sieberts SK, Simon S, Dembogurski R, Ferreyra D, Peters MA, Do K, Hoff B, Doerr M, MacDuffie Woodburn J, Omberg L, ... ... Logsdon BA, et al. P4-113: AGORA: A PLATFORM FOR THE DEMOCRATIZATION OF ALZHEIMER'S DISEASE TARGET EVIDENCE Alzheimer's & Dementia. 15: P1319-P1319. DOI: 10.1016/J.Jalz.2019.06.3774  0.363
2019 Uyar A, Oblak AL, Williams HM, Pandey RS, Kotredes KP, Preuss C, Logsdon BA, Sukoff Rizzo SJ, Howell G, Lamb BT, Sasner M, Carter GW. P4-098: TRANSCRIPTOMIC ALTERATIONS DRIVEN BY THE TREM2*R47H ALLELE VARY ACROSS DIFFERENT TRANSGENIC MOUSE MODELS Alzheimer's & Dementia. 15: P1312-P1313. DOI: 10.1016/J.Jalz.2019.06.3758  0.301
2019 Preuss C, Logsdon BA, Milind N, Harber A, Uyar A, Pandey RS, Perumal TM, Mangravite LM, Howell G, Sasner M, Mukherjee S, Crane PK, Carter GW. P3-142: Stratification Of Alzheimer'S Patients Using Postmortem Brain Co-Expression Data Reveals Novel Genetic Modifiers Mediating Inflammatory Aging Alzheimers & Dementia. 15. DOI: 10.1016/J.Jalz.2019.06.3170  0.359
2019 Sasner M, Oblak AL, Preuss C, Garceau D, Williams H, Kotredes KP, Ingraham C, Pandey RS, Uyar A, Soni D, Logsdon BA, Lamb BT, Carter GW, Howell G. P2-133: Initial Characterization Of Novel Mouse Models Of Late Onset Alzheimer'S Disease Based On Human Genetic Associations Alzheimers & Dementia. 15. DOI: 10.1016/J.Jalz.2019.06.2540  0.425
2019 Preuss C, Pandey RS, Fine A, Uyar A, Logsdon BA, Perumal TM, Piazza E, Rullo E, Kuhar J, Bailey C, Mangravite LM, Howell G, Sasner M, Carter GW. P2-105: A Novel Systems Biology Approach To Evaluate Mouse Models Of Late Onset Alzheimer'S Disease: Ncounter Mouse Ad Panel Alzheimers & Dementia. 15. DOI: 10.1016/J.Jalz.2019.06.2512  0.376
2018 Wang H, Li Y, Ryder JW, Hole JT, Ebert PJ, Airey DC, Qian HR, Logsdon B, Fisher A, Ahmed Z, Murray TK, Cavallini A, Bose S, Eastwood BJ, Collier DA, et al. Genome-wide RNAseq study of the molecular mechanisms underlying microglia activation in response to pathological tau perturbation in the rTg4510 tau transgenic animal model. Molecular Neurodegeneration. 13: 65. PMID 30558641 DOI: 10.1186/S13024-018-0296-Y  0.384
2018 Lee SI, Celik S, Logsdon BA, Lundberg SM, Martins TJ, Oehler VG, Estey EH, Miller CP, Chien S, Dai J, Saxena A, Blau CA, Becker PS. A machine learning approach to integrate big data for precision medicine in acute myeloid leukemia. Nature Communications. 9: 42. PMID 29298978 DOI: 10.1038/S41467-017-02465-5  0.328
2018 Green K, Blue E, Logsdon BA, Rolf B, Rose S, Knupp A, Frankowski H, Latimer CS, Keene D, Young JE, Dorschner M, Garden GA, Jayadev S. P4-230: A Genomic And Cell Function Approach To Identifying Cell-Type-Specific Biological Networks In Alzheimer'S Disease Alzheimers & Dementia. 14. DOI: 10.1016/J.Jalz.2018.07.051  0.377
2017 Perumal TM, Dang K, Eddy J, Logsdon BA, Omberg L, Mangravite LM. Understanding The Molecular Etiology Of Alzheimer'S Disease Across Seven Different Brain Regions Alzheimers & Dementia. 13: 1491. DOI: 10.1016/J.Jalz.2017.07.577  0.35
2017 Logsdon BA, Perumal TM, Sieberts SK, Omberg L, Mangravite LM. [P2-101]: CROSS STUDY INTEGRATIVE NETWORK ANALYSIS IDENTIFICATION OF AD DISEASE ETIOLOGY Alzheimer's & Dementia. 13: P645-P646. DOI: 10.1016/J.Jalz.2017.06.750  0.356
2016 Fromer M, Roussos P, Sieberts SK, Johnson JS, Kavanagh DH, Perumal TM, Ruderfer DM, Oh EC, Topol A, Shah HR, Klei LL, Kramer R, Pinto D, Gümüş ZH, Cicek AE, ... ... Logsdon BA, et al. Gene expression elucidates functional impact of polygenic risk for schizophrenia. Nature Neuroscience. PMID 27668389 DOI: 10.1038/Nn.4399  0.317
2016 Celik S, Logsdon BA, Battle S, Drescher CW, Rendi M, Hawkins RD, Lee SI. Extracting a low-dimensional description of multiple gene expression datasets reveals a potential driver for tumor-associated stroma in ovarian cancer. Genome Medicine. 8: 66. PMID 27287041 DOI: 10.1186/S13073-016-0319-7  0.371
2016 Grechkin M, Logsdon BA, Gentles AJ, Lee SI. Identifying Network Perturbation in Cancer. Plos Computational Biology. 12: e1004888. PMID 27145341 DOI: 10.1371/Journal.Pcbi.1004888  0.381
2016 Allen GI, Amoroso N, Anghel C, Balagurusamy V, Bare CJ, Beaton D, Bellotti R, Bennett DA, Boehme K, Boutros PC, Caberlotto L, Caloian C, Campbell F, Neto EC, Chang YC, ... ... Logsdon BA, et al. Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease. Alzheimer's & Dementia : the Journal of the Alzheimer's Association. PMID 27079753 DOI: 10.1016/J.Jalz.2016.02.006  0.367
2016 Logsdon BA, Zhang B, Komashko V, Mostafavi S, Chen M, Perumal TM, Funk C, Allen M, Amberkar S, Hide W, Friend SH, Bennett DA, Schadt E, de Jager P, Price ND, et al. P4-031: Integrative Network Analysis of Multiple Alzheimer's Disease Rnaseq Studies From the Accelerating Medicine Partnership-Alzheimer's Disease Consortium Alzheimer's & Dementia. 12: P1026-P1027. DOI: 10.1016/J.Jalz.2016.06.2120  0.401
2015 Logsdon BA, Gentles AJ, Miller CP, Blau CA, Becker PS, Lee SI. Sparse expression bases in cancer reveal tumor drivers. Nucleic Acids Research. 43: 1332-44. PMID 25583238 DOI: 10.1093/Nar/Gku1290  0.351
2014 Logsdon BA, Dai JY, Auer PL, Johnsen JM, Ganesh SK, Smith NL, Wilson JG, Tracy RP, Lange LA, Jiao S, Rich SS, Lettre G, Carlson CS, Jackson RD, O'Donnell CJ, et al. A variational Bayes discrete mixture test for rare variant association. Genetic Epidemiology. 38: 21-30. PMID 24482836 DOI: 10.1002/Gepi.21772  0.338
2014 Lee S, Logsdon B, Saxena A, Oehler V, Miller CP, Blau CA, Becker PS. Big Data Approach to Identify Molecular Basis for Drug Sensitivity Phenotypes in Acute Myeloid Leukemia Blood. 124: 265-265. DOI: 10.1182/Blood.V124.21.265.265  0.361
2013 Hoffman GE, Logsdon BA, Mezey JG. PUMA: a unified framework for penalized multiple regression analysis of GWAS data. Plos Computational Biology. 9: e1003101. PMID 23825936 DOI: 10.1371/Journal.Pcbi.1003101  0.394
2012 Auer PL, Johnsen JM, Johnson AD, Logsdon BA, Lange LA, Nalls MA, Zhang G, Franceschini N, Fox K, Lange EM, Rich SS, O'Donnell CJ, Jackson RD, Wallace RB, Chen Z, et al. Imputation of exome sequence variants into population- based samples and blood-cell-trait-associated loci in African Americans: NHLBI GO Exome Sequencing Project. American Journal of Human Genetics. 91: 794-808. PMID 23103231 DOI: 10.1016/J.Ajhg.2012.08.031  0.325
2012 Dai JY, Logsdon BA, Huang Y, Hsu L, Reiner AP, Prentice RL, Kooperberg C. Simultaneously testing for marginal genetic association and gene-environment interaction. American Journal of Epidemiology. 176: 164-73. PMID 22771729 DOI: 10.1093/Aje/Kwr521  0.312
2012 Logsdon BA, Carty CL, Reiner AP, Dai JY, Kooperberg C. A novel variational Bayes multiple locus Z-statistic for genome-wide association studies with Bayesian model averaging. Bioinformatics (Oxford, England). 28: 1738-44. PMID 22563072 DOI: 10.1093/Bioinformatics/Bts261  0.343
2012 Logsdon BA, Hoffman GE, Mezey JG. Mouse obesity network reconstruction with a variational Bayes algorithm to employ aggressive false positive control. Bmc Bioinformatics. 13: 53. PMID 22471599 DOI: 10.1186/1471-2105-13-53  0.323
2010 Logsdon BA, Mezey J. Gene expression network reconstruction by convex feature selection when incorporating genetic perturbations. Plos Computational Biology. 6: e1001014. PMID 21152011 DOI: 10.1371/Journal.Pcbi.1001014  0.344
2010 Logsdon BA, Hoffman GE, Mezey JG. A variational Bayes algorithm for fast and accurate multiple locus genome-wide association analysis. Bmc Bioinformatics. 11: 58. PMID 20105321 DOI: 10.1186/1471-2105-11-58  0.324
2006 Logsdon BA, Perumal TM, Daily K, Sieberts SK, Omberg L, Mangravite LM, Preuss C, Carter GW. O3-03-02: SYSTEMS BIOLOGY RANKING OF CANDIDATE ALZHEIMER'S DRIVER GENES IDENTIFIES NEW GENETIC DRIVERS OF ALZHEIMER'S DISEASE ETIOLOGY Alzheimer's & Dementia. 14: P1015-P1015. DOI: 10.1016/J.Jalz.2018.06.2783  0.394
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