| Year |
Citation |
Score |
| 2023 |
Machado TB, Picorelli ACR, de Azevedo BL, de Aquino ILM, Queiroz VF, Rodrigues RAL, Araújo JP, Ullmann LS, Dos Santos TM, Marques RE, Guimarães SL, Andrade ACSP, Gularte JS, Demoliner M, Filippi M, ... ... Aylward FO, et al. Gene duplication as a major force driving the genome expansion in some giant viruses. Journal of Virology. 97: e0130923. PMID 38092658 DOI: 10.1128/jvi.01309-23 |
0.321 |
|
| 2023 |
Weinheimer AR, Aylward FO, Leray M, Scott JJ. Contrasting drivers of abundant phage and prokaryotic communities revealed in diverse coastal ecosystems. Isme Communications. 3: 127. PMID 38049529 DOI: 10.1038/s43705-023-00333-6 |
0.662 |
|
| 2023 |
Moniruzzaman M, Erazo-Garcia PM, Farzad R, Ha AD, Jivaji A, Karki S, Sheyn U, Stanton J, Minch B, Stephens D, Hancks DC, Rodrigues RA, Abrahao JS, Vardi A, Aylward FO. Virologs, viral mimicry, and virocell metabolism: The expanding scale of cellular functions encoded in the complex genomes of giant viruses. Fems Microbiology Letters. PMID 37740576 DOI: 10.1093/femsre/fuad053 |
0.78 |
|
| 2023 |
Fromm A, Hevroni G, Vincent F, Schatz D, Martinez-Gutierrez CA, Aylward FO, Vardi A. Homing in on the rare virosphere reveals the native host of giant viruses. Biorxiv : the Preprint Server For Biology. PMID 37425953 DOI: 10.1101/2023.06.27.546645 |
0.342 |
|
| 2023 |
Bueren EK, Weinheimer AR, Aylward FO, Hsu BB, Haak DC, Belden LK. Characterization of prophages in bacterial genomes from the honey bee ( gut microbiome. Peerj. 11: e15383. PMID 37312882 DOI: 10.7717/peerj.15383 |
0.379 |
|
| 2023 |
Ha AD, Moniruzzaman M, Aylward FO. Assessing the biogeography of marine giant viruses in four oceanic transects. Isme Communications. 3: 43. PMID 37120676 DOI: 10.1038/s43705-023-00252-6 |
0.394 |
|
| 2023 |
Boysen AK, Carlson LT, Durham BP, Groussman RD, Aylward FO, Ribalet F, Heal KR, White AE, DeLong EF, Armbrust EV, Ingalls AE. Correction for Boysen et al., "Particulate Metabolites and Transcripts Reflect Diel Oscillations of Microbial Activity in the Surface Ocean". Msystems. e0108322. PMID 36943103 DOI: 10.1128/msystems.01083-22 |
0.453 |
|
| 2023 |
Ha AD, Moniruzzaman M, Aylward FO. Assessing the biogeography of marine giant viruses in four oceanic transects. Biorxiv : the Preprint Server For Biology. PMID 36778472 DOI: 10.1101/2023.01.30.526306 |
0.392 |
|
| 2022 |
Farzad R, Ha AD, Aylward FO. Diversity and genomics of giant viruses in the North Pacific Subtropical Gyre. Frontiers in Microbiology. 13: 1021923. PMID 36504832 DOI: 10.3389/fmicb.2022.1021923 |
0.393 |
|
| 2022 |
Moniruzzaman M, Erazo-Garcia MP, Aylward FO. Endogenous giant viruses contribute to intraspecies genomic variability in the model green alga . Virus Evolution. 8: veac102. PMID 36447475 DOI: 10.1093/ve/veac102 |
0.353 |
|
| 2022 |
Aylward FO, Moniruzzaman M. Viral Complexity. Biomolecules. 12. PMID 36008955 DOI: 10.3390/biom12081061 |
0.357 |
|
| 2022 |
Martinez-Gutierrez CA, Aylward FO. Genome size distributions in bacteria and archaea are strongly linked to evolutionary history at broad phylogenetic scales. Plos Genetics. 18: e1010220. PMID 35605022 DOI: 10.1371/journal.pgen.1010220 |
0.305 |
|
| 2022 |
Khairunisa BH, Susanti D, Loganathan U, Teutsch CD, Campbell BT, Fiske D, Wilkinson CA, Aylward FO, Mukhopadhyay B. Dominant remodelling of cattle rumen microbiome by (tall fescue) KY-31 carrying a fungal endophyte. Access Microbiology. 4: 000322. PMID 35355877 DOI: 10.1099/acmi.0.000322 |
0.304 |
|
| 2022 |
Weinheimer AR, Aylward FO. Infection strategy and biogeography distinguish cosmopolitan groups of marine jumbo bacteriophages. The Isme Journal. PMID 35260829 DOI: 10.1038/s41396-022-01214-x |
0.374 |
|
| 2022 |
Muratore D, Boysen AK, Harke MJ, Becker KW, Casey JR, Coesel SN, Mende DR, Wilson ST, Aylward FO, Eppley JM, Vislova A, Peng S, Rodriguez-Gonzalez RA, Beckett SJ, Virginia Armbrust E, et al. Complex marine microbial communities partition metabolism of scarce resources over the diel cycle. Nature Ecology & Evolution. PMID 35058612 DOI: 10.1038/s41559-021-01606-w |
0.749 |
|
| 2021 |
Osburn ED, Badgley BD, Strahm BD, Aylward FO, Barrett JE. Emergent properties of microbial communities drive accelerated biogeochemical cycling in disturbed temperate forests. Ecology. e03553. PMID 34622940 DOI: 10.1002/ecy.3553 |
0.315 |
|
| 2021 |
Ha AD, Moniruzzaman M, Aylward FO. High Transcriptional Activity and Diverse Functional Repertoires of Hundreds of Giant Viruses in a Coastal Marine System. Msystems. e0029321. PMID 34254826 DOI: 10.1128/mSystems.00293-21 |
0.387 |
|
| 2021 |
Boysen AK, Carlson LT, Durham BP, Groussman RD, Aylward FO, Ribalet F, Heal KR, White AE, DeLong EF, Armbrust EV, Ingalls AE. Particulate Metabolites and Transcripts Reflect Diel Oscillations of Microbial Activity in the Surface Ocean. Msystems. 6. PMID 33947808 DOI: 10.1128/mSystems.00896-20 |
0.562 |
|
| 2021 |
Karki S, Moniruzzaman M, Aylward FO. Comparative Genomics and Environmental Distribution of Large dsDNA Viruses in the Family . Frontiers in Microbiology. 12: 657471. PMID 33790885 DOI: 10.3389/fmicb.2021.657471 |
0.351 |
|
| 2021 |
Aylward FO, Moniruzzaman M. ViralRecall-A Flexible Command-Line Tool for the Detection of Giant Virus Signatures in 'Omic Data. Viruses. 13. PMID 33498458 DOI: 10.3390/v13020150 |
0.339 |
|
| 2020 |
Moniruzzaman M, Weinheimer AR, Martinez-Gutierrez CA, Aylward FO. Widespread endogenization of giant viruses shapes genomes of green algae. Nature. PMID 33208937 DOI: 10.1038/s41586-020-2924-2 |
0.363 |
|
| 2020 |
Aylward FO. The coevolutionary history of the microbial planet. Environmental Microbiology Reports. PMID 32939975 DOI: 10.1111/1758-2229.12888 |
0.405 |
|
| 2020 |
Weinheimer AR, Aylward FO. A distinct lineage of Caudovirales that encodes a deeply branching multi-subunit RNA polymerase. Nature Communications. 11: 4506. PMID 32908149 DOI: 10.1038/S41467-020-18281-3 |
0.367 |
|
| 2020 |
Aylward FO, Santoro AE. Heterotrophic Thaumarchaea with Small Genomes Are Widespread in the Dark Ocean. Msystems. 5. PMID 32546674 DOI: 10.1128/mSystems.00415-20 |
0.371 |
|
| 2020 |
Moniruzzaman M, Martinez-Gutierrez CA, Weinheimer AR, Aylward FO. Dynamic genome evolution and complex virocell metabolism of globally-distributed giant viruses. Nature Communications. 11: 1710. PMID 32249765 DOI: 10.1038/S41467-020-15507-2 |
0.456 |
|
| 2020 |
Linz AM, Aylward FO, Bertilsson S, McMahon KD. Time‐series metatranscriptomes reveal conserved patterns between phototrophic and heterotrophic microbes in diverse freshwater systems Limnology and Oceanography. 65. DOI: 10.1002/Lno.11306 |
0.313 |
|
| 2019 |
Osburn ED, McBride SG, Aylward FO, Badgley BD, Strahm BD, Knoepp JD, Barrett JE. Soil Bacterial and Fungal Communities Exhibit Distinct Long-Term Responses to Disturbance in Temperate Forests. Frontiers in Microbiology. 10: 2872. PMID 31921050 DOI: 10.3389/Fmicb.2019.02872 |
0.403 |
|
| 2019 |
Martinez-Gutierrez CA, Aylward FO. Strong Purifying Selection is Associated with Genome Streamlining in Epipelagic Marinimicrobia. Genome Biology and Evolution. PMID 31539038 DOI: 10.1093/Gbe/Evz201 |
0.428 |
|
| 2019 |
Kolody BC, McCrow JP, Allen LZ, Aylward FO, Fontanez KM, Moustafa A, Moniruzzaman M, Chavez FP, Scholin CA, Allen EE, Worden AZ, Delong EF, Allen AE. Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection. The Isme Journal. PMID 31320727 DOI: 10.1038/S41396-019-0472-2 |
0.763 |
|
| 2018 |
Getz EW, Tithi SS, Zhang L, Aylward FO. Parallel Evolution of Genome Streamlining and Cellular Bioenergetics across the Marine Radiation of a Bacterial Phylum. Mbio. 9. PMID 30228235 DOI: 10.1128/Mbio.01089-18 |
0.509 |
|
| 2018 |
Harke MJ, Frischkorn KR, Haley ST, Aylward FO, Zehr JP, Dyhrman ST. Periodic and coordinated gene expression between a diazotroph and its diatom host. The Isme Journal. PMID 30116042 DOI: 10.1038/S41396-018-0262-2 |
0.41 |
|
| 2018 |
Tithi SS, Aylward FO, Jensen RV, Zhang L. FastViromeExplorer: a pipeline for virus and phage identification and abundance profiling in metagenomics data. Peerj. 6: e4227. PMID 29340239 DOI: 10.7717/Peerj.4227 |
0.382 |
|
| 2017 |
Luo E, Aylward FO, Mende DR, DeLong EF. Bacteriophage Distributions and Temporal Variability in the Ocean's Interior. Mbio. 8. PMID 29184020 DOI: 10.1128/Mbio.01903-17 |
0.763 |
|
| 2017 |
Aylward FO, Boeuf D, Mende DR, Wood-Charlson EM, Vislova A, Eppley JM, Romano AE, DeLong EF. Diel cycling and long-term persistence of viruses in the ocean's euphotic zone. Proceedings of the National Academy of Sciences of the United States of America. 114: 11446-11451. PMID 29073070 DOI: 10.1073/Pnas.1714821114 |
0.769 |
|
| 2017 |
Mende DR, Bryant JA, Aylward FO, Eppley JM, Nielsen T, Karl DM, DeLong EF. Environmental drivers of a microbial genomic transition zone in the ocean's interior. Nature Microbiology. PMID 28808230 DOI: 10.1038/S41564-017-0008-3 |
0.784 |
|
| 2017 |
Wilson ST, Aylward FO, Ribalet F, Barone B, Casey JR, Connell PE, Eppley JM, Ferrón S, Fitzsimmons JN, Hayes CT, Romano AE, Turk-Kubo KA, Vislova A, Armbrust EV, Caron DA, et al. Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera. Nature Microbiology. 2: 17118. PMID 28758990 DOI: 10.1038/Nmicrobiol.2017.118 |
0.607 |
|
| 2017 |
Gontang EA, Aylward FO, Carlos C, Glavina Del Rio T, Chovatia M, Fern A, Lo CC, Malfatti SA, Tringe SG, Currie CR, Kolter R. Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach. Plos One. 12: e0177189. PMID 28545131 DOI: 10.1371/Journal.Pone.0177189 |
0.657 |
|
| 2016 |
Mende DR, Aylward FO, Eppley JM, Nielsen TN, DeLong EF. Improved Environmental Genomes via Integration of Metagenomic and Single-Cell Assemblies. Frontiers in Microbiology. 7: 143. PMID 26904016 DOI: 10.3389/Fmicb.2016.00143 |
0.742 |
|
| 2015 |
Bryant JA, Aylward FO, Eppley JM, Karl DM, Church MJ, DeLong EF. Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre. The Isme Journal. PMID 26645474 DOI: 10.1038/Ismej.2015.221 |
0.749 |
|
| 2015 |
Aylward FO, Khadempour L, Tremmel DM, McDonald BR, Nicora CD, Wu S, Moore RJ, Orton DJ, Monroe ME, Piehowski PD, Purvine SO, Smith RD, Lipton MS, Burnum-Johnson KE, Currie CR. Correction: Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants. Plos One. 10: e0139151. PMID 26398520 DOI: 10.1371/journal.pone.0139151 |
0.537 |
|
| 2015 |
Aylward FO, Khadempour L, Tremmel DM, McDonald BR, Nicora CD, Wu S, Moore RJ, Orton DJ, Monroe ME, Piehowski PD, Purvine SO, Smith RD, Lipton MS, Burnum-Johnson KE, Currie CR. Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants. Plos One. 10: e0134752. PMID 26317212 DOI: 10.1371/Journal.Pone.0134752 |
0.603 |
|
| 2015 |
Spero MA, Aylward FO, Currie CR, Donohue TJ. Phylogenomic analysis and predicted physiological role of the proton-translocating NADH:quinone oxidoreductase (complex I) across bacteria. Mbio. 6. PMID 25873378 DOI: 10.1128/Mbio.00389-15 |
0.593 |
|
| 2015 |
Aylward FO, Eppley JM, Smith JM, Chavez FP, Scholin CA, DeLong EF. Microbial community transcriptional networks are conserved in three domains at ocean basin scales. Proceedings of the National Academy of Sciences of the United States of America. 112: 5443-8. PMID 25775583 DOI: 10.1073/Pnas.1502883112 |
0.672 |
|
| 2014 |
Aylward FO, Suen G, Biedermann PH, Adams AS, Scott JJ, Malfatti SA, Glavina del Rio T, Tringe SG, Poulsen M, Raffa KF, Klepzig KD, Currie CR. Convergent bacterial microbiotas in the fungal agricultural systems of insects. Mbio. 5: e02077. PMID 25406380 DOI: 10.1128/Mbio.02077-14 |
0.76 |
|
| 2014 |
Huang EL, Aylward FO, Kim YM, Webb-Robertson BJ, Nicora CD, Hu Z, Metz TO, Lipton MS, Smith RD, Currie CR, Burnum-Johnson KE. The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation. Environmental Microbiology Reports. 6: 389-95. PMID 24992538 DOI: 10.1111/1758-2229.12163 |
0.653 |
|
| 2014 |
Aylward FO, Suen G, Biedermann PHW, Adams AS, Scott JJ, Malfatti SA, Del Rio TG, Tringe SG, Poulsen M, Raffa KF, Klepzig KD, Currie CR. Convergent bacterial microbiotas in the fungal agricultural systems of insects Mbio. 5. DOI: 10.1128/mBio.02077-14 |
0.672 |
|
| 2013 |
Aylward FO, Burnum-Johnson KE, Tringe SG, Teiling C, Tremmel DM, Moeller JA, Scott JJ, Barry KW, Piehowski PD, Nicora CD, Malfatti SA, Monroe ME, Purvine SO, Goodwin LA, Smith RD, et al. Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens. Applied and Environmental Microbiology. 79: 3770-8. PMID 23584789 DOI: 10.1128/Aem.03833-12 |
0.74 |
|
| 2013 |
Aylward FO, McDonald BR, Adams SM, Valenzuela A, Schmidt RA, Goodwin LA, Woyke T, Currie CR, Suen G, Poulsen M. Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities. Applied and Environmental Microbiology. 79: 3724-33. PMID 23563954 DOI: 10.1128/Aem.00518-13 |
0.651 |
|
| 2013 |
Adams AS, Aylward FO, Adams SM, Erbilgin N, Aukema BH, Currie CR, Suen G, Raffa KF. Mountain pine beetles colonizing historical and naive host trees are associated with a bacterial community highly enriched in genes contributing to terpene metabolism. Applied and Environmental Microbiology. 79: 3468-75. PMID 23542624 DOI: 10.1128/Aem.00068-13 |
0.668 |
|
| 2013 |
Aylward FO, Tremmel DM, Starrett GJ, Bruce DC, Chain P, Chen A, Davenport KW, Detter C, Han CS, Han J, Huntemann M, Ivanova NN, Kyrpides NC, Markowitz V, Mavrommatis K, et al. Complete Genome of Serratia sp. Strain FGI 94, a Strain Associated with Leaf-Cutter Ant Fungus Gardens. Genome Announcements. 1: e0023912. PMID 23516234 DOI: 10.1128/Genomea.00239-12 |
0.561 |
|
| 2013 |
Aylward FO, Tremmel DM, Bruce DC, Chain P, Chen A, Walston Davenport K, Detter C, Han CS, Han J, Huntemann M, Ivanova NN, Kyrpides NC, Markowitz V, Mavrommatis K, Nolan M, et al. Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens. Genome Announcements. 1. PMID 23469353 DOI: 10.1128/Genomea.00238-12 |
0.591 |
|
| 2013 |
Christopherson MR, Suen G, Bramhacharya S, Jewell KA, Aylward FO, Mead D, Brumm PJ. The genome sequences of Cellulomonas fimi and "Cellvibrio gilvus" reveal the cellulolytic strategies of two facultative anaerobes, transfer of "Cellvibrio gilvus" to the genus Cellulomonas, and proposal of Cellulomonas gilvus sp. nov. Plos One. 8: e53954. PMID 23342046 DOI: 10.1371/Journal.Pone.0053954 |
0.422 |
|
| 2012 |
Aylward FO, Currie CR, Suen G. The Evolutionary Innovation of Nutritional Symbioses in Leaf-Cutter Ants. Insects. 3: 41-61. PMID 26467948 DOI: 10.3390/Insects3010041 |
0.674 |
|
| 2012 |
Aylward FO, Burnum KE, Scott JJ, Suen G, Tringe SG, Adams SM, Barry KW, Nicora CD, Piehowski PD, Purvine SO, Starrett GJ, Goodwin LA, Smith RD, Lipton MS, Currie CR. Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens. The Isme Journal. 6: 1688-701. PMID 22378535 DOI: 10.1038/Ismej.2012.10 |
0.771 |
|
| 2011 |
Suen G, Weimer PJ, Stevenson DM, Aylward FO, Boyum J, Deneke J, Drinkwater C, Ivanova NN, Mikhailova N, Chertkov O, Goodwin LA, Currie CR, Mead D, Brumm PJ. The complete genome sequence of Fibrobacter succinogenes S85 reveals a cellulolytic and metabolic specialist. Plos One. 6: e18814. PMID 21526192 DOI: 10.1371/Journal.Pone.0018814 |
0.627 |
|
| 2011 |
Suen G, Scott JJ, Aylward FO, Currie CR. The Microbiome of Leaf-Cutter Ant Fungus Gardens Handbook of Molecular Microbial Ecology Ii: Metagenomics in Different Habitats. 367-379. DOI: 10.1002/9781118010549.ch36 |
0.682 |
|
| 2010 |
Suen G, Scott JJ, Aylward FO, Adams SM, Tringe SG, Pinto-Tomás AA, Foster CE, Pauly M, Weimer PJ, Barry KW, Goodwin LA, Bouffard P, Li L, Osterberger J, Harkins TT, et al. An insect herbivore microbiome with high plant biomass-degrading capacity. Plos Genetics. 6: e1001129. PMID 20885794 DOI: 10.1371/Journal.Pgen.1001129 |
0.786 |
|
| 2009 |
Herron MD, Hackett JD, Aylward FO, Michod RE. Triassic origin and early radiation of multicellular volvocine algae. Proceedings of the National Academy of Sciences of the United States of America. 106: 3254-8. PMID 19223580 DOI: 10.1073/Pnas.0811205106 |
0.343 |
|
| Show low-probability matches. |