Daniel P. Smith - Publications

Affiliations: 
2011 Oregon State University, Corvallis, OR 

11 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Smith DP, Nicora CD, Carini P, Lipton MS, Norbeck AD, Smith RD, Giovannoni SJ. Proteome Remodeling in Response to Sulfur Limitation in "Candidatus Pelagibacter ubique". Msystems. 1. PMID 27822545 DOI: 10.1128/mSystems.00068-16  0.711
2013 Smith DP, Thrash JC, Nicora CD, Lipton MS, Burnum-Johnson KE, Carini P, Smith RD, Giovannoni SJ. Proteomic and transcriptomic analyses of "Candidatus Pelagibacter ubique" describe the first PII-independent response to nitrogen limitation in a free-living Alphaproteobacterium. Mbio. 4: e00133-12. PMID 24281717 DOI: 10.1128/Mbio.00133-12  0.705
2013 Zarraonaindia I, Smith DP, Gilbert JA. Beyond the genome: community-level analysis of the microbial world. Biology & Philosophy. 28: 261-282. PMID 23482824 DOI: 10.1007/S10539-012-9357-8  0.309
2012 Gilbert JA, Bao Y, Wang H, Sansone SA, Edmunds SC, Morrison N, Meyer F, Schriml LM, Davies N, Sterk P, Wilkening J, Garrity GM, Field D, Robbins R, Smith DP, et al. Report of the 13(th) Genomic Standards Consortium Meeting, Shenzhen, China, March 4-7, 2012. Standards in Genomic Sciences. 6: 276-86. PMID 22768370 DOI: 10.4056/Sigs.2876184  0.322
2011 Sun J, Steindler L, Thrash JC, Halsey KH, Smith DP, Carter AE, Landry ZC, Giovannoni SJ. One carbon metabolism in SAR11 pelagic marine bacteria. Plos One. 6: e23973. PMID 21886845 DOI: 10.1371/Journal.Pone.0023973  0.584
2011 Steindler L, Schwalbach MS, Smith DP, Chan F, Giovannoni SJ. Energy starved Candidatus Pelagibacter ubique substitutes light-mediated ATP production for endogenous carbon respiration. Plos One. 6: e19725. PMID 21573025 DOI: 10.1371/Journal.Pone.0019725  0.549
2011 Sowell SM, Abraham PE, Shah M, Verberkmoes NC, Smith DP, Barofsky DF, Giovannoni SJ. Environmental proteomics of microbial plankton in a highly productive coastal upwelling system. The Isme Journal. 5: 856-65. PMID 21068774 DOI: 10.1038/Ismej.2010.168  0.568
2010 Smith DP, Kitner JB, Norbeck AD, Clauss TR, Lipton MS, Schwalbach MS, Steindler L, Nicora CD, Smith RD, Giovannoni SJ. Transcriptional and translational regulatory responses to iron limitation in the globally distributed marine bacterium Candidatus pelagibacter ubique. Plos One. 5: e10487. PMID 20463970 DOI: 10.1371/Journal.Pone.0010487  0.526
2010 Schwalbach MS, Tripp HJ, Steindler L, Smith DP, Giovannoni SJ. The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity. Environmental Microbiology. 12: 490-500. PMID 19889000 DOI: 10.1111/J.1462-2920.2009.02092.X  0.703
2009 Meyer MM, Ames TD, Smith DP, Weinberg Z, Schwalbach MS, Giovannoni SJ, Breaker RR. Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'. Bmc Genomics. 10: 268. PMID 19531245 DOI: 10.1186/1471-2164-10-268  0.541
2007 Wilhelm LJ, Tripp HJ, Givan SA, Smith DP, Giovannoni SJ. Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data. Biology Direct. 2: 27. PMID 17988398 DOI: 10.1186/1745-6150-2-27  0.688
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