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Chittibabu Guda - Publications

Affiliations: 
Computer Science State University of New York, Albany, Albany, NY, United States 
Area:
Bioinformatics Biology, Computer Science
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47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zhang W, Klinkebiel D, Barger CJ, Pandey S, Guda C, Miller A, Akers SN, Odunsi K, Karpf AR. Global DNA Hypomethylation in Epithelial Ovarian Cancer: Passive Demethylation and Association with Genomic Instability. Cancers. 12. PMID 32213861 DOI: 10.3390/Cancers12030764  0.32
2020 Vellichirammal NN, Albahrani A, Banwait JK, Mishra NK, Li Y, Roychoudhury S, Kling MJ, Mirza S, Bhakat KK, Band V, Joshi SS, Guda C. Pan-Cancer Analysis Reveals the Diverse Landscape of Novel Sense and Antisense Fusion Transcripts. Molecular Therapy. Nucleic Acids. 19: 1379-1398. PMID 32160708 DOI: 10.1016/J.Omtn.2020.01.023  0.34
2020 Bahado-Singh RO, Vishweswaraiah S, Aydas B, Yilmaz A, Saiyed NM, Mishra NK, Guda C, Radhakrishna U. Precision cardiovascular medicine: artificial intelligence and epigenetics for the pathogenesis and prediction of coarctation in neonates. The Journal of Maternal-Fetal & Neonatal Medicine : the Official Journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians. 1-8. PMID 32019381 DOI: 10.1080/14767058.2020.1722995  0.315
2020 Vellichirammal NN, Albahrani A, Li Y, Guda C. Identification of Fusion Transcripts from Unaligned RNA-Seq Reads Using ChimeRScope. Methods in Molecular Biology (Clifton, N.J.). 2079: 13-25. PMID 31728959 DOI: 10.1007/978-1-4939-9904-0_2  0.314
2020 Doxtater K, Zacheaus C, Sekhri R, Mishra UK, Stiles ZE, Mishra N, Guda C, Zafar N, Amin M, Shukla P, Yallapu MM, Jaggi M, Chauhan SC, Tripathi MK. Abstract 3142: Stress regulated role of lncRNA Malat1 in colorectal cancer progression and metastasis Clinical Trials. 80: 3142-3142. DOI: 10.1158/1538-7445.Am2020-3142  0.314
2019 Bahado-Singh RO, Vishweswaraiah S, Aydas B, Mishra NK, Yilmaz A, Guda C, Radhakrishna U. Artificial intelligence analysis of Newborn Leucocyte epigenomic markers for the Prediction of Autism. Brain Research. 146457. PMID 31521637 DOI: 10.1016/J.Brainres.2019.146457  0.312
2019 Mishra NK, Southekal S, Guda C. Survival Analysis of Multi-Omics Data Identifies Potential Prognostic Markers of Pancreatic Ductal Adenocarcinoma. Frontiers in Genetics. 10: 624. PMID 31379917 DOI: 10.3389/Fgene.2019.00624  0.335
2019 Mishra NK, Southekal S, Guda C. Abstract 833: Integrative analysis of TCGA pancreatic ductal adenocarcinoma data Cancer Research. 79: 833-833. DOI: 10.1158/1538-7445.Am2019-833  0.333
2018 Radhakrishna U, Vishweswaraiah S, Veerappa AM, Zafra R, Albayrak S, Sitharam PH, Saiyed NM, Mishra NK, Guda C, Bahado-Singh R. Newborn blood DNA epigenetic variations and signaling pathway genes associated with Tetralogy of Fallot (TOF). Plos One. 13: e0203893. PMID 30212560 DOI: 10.1371/Journal.Pone.0203893  0.322
2018 Wipfler K, Cornish AS, Guda C. Comparative molecular characterization of typical and exceptional responders in glioblastoma. Oncotarget. 9: 28421-28433. PMID 29983870 DOI: 10.18632/Oncotarget.25420  0.324
2018 Vellichirammal NN, Banwait J, Albahrani A, Li Y, Guda C. Abstract 3274: Pan cancer analysis of fusion genes in TCGA using ChimeRScope, an alignment free algorithm Cancer Research. 78: 3274-3274. DOI: 10.1158/1538-7445.Am2018-3274  0.339
2018 Mishra NK, Meng N, Guda C. Abstract 2244: Differential DNA methylation analysis of TCGA cholangiocarcinoma data Cancer Research. 78: 2244-2244. DOI: 10.1158/1538-7445.Am2018-2244  0.313
2017 Talbott H, Hou X, Qiu F, Zhang P, Guda C, Yu F, Cushman RA, Wood JR, Wang C, Cupp AS, Davis JS. Transcriptomic and bioinformatics analysis of the early time-course of the response to prostaglandin F2 alpha in the bovine corpus luteum. Data in Brief. 14: 695-706. PMID 28932774 DOI: 10.1016/J.Dib.2017.08.026  0.306
2017 Li Y, Heavican TB, Vellichirammal NN, Iqbal J, Guda C. ChimeRScope: a novel alignment-free algorithm for fusion transcript prediction using paired-end RNA-Seq data. Nucleic Acids Research. PMID 28472320 DOI: 10.1093/Nar/Gkx315  0.345
2017 Mishra NK, Guda C. Genome-wide DNA methylation analysis reveals molecular subtypes of pancreatic cancer. Oncotarget. PMID 28423671 DOI: 10.18632/Oncotarget.15993  0.341
2016 Vural S, Wang X, Guda C. Classification of breast cancer patients using somatic mutation profiles and machine learning approaches. Bmc Systems Biology. 10: 62. PMID 27587275 DOI: 10.1186/S12918-016-0306-Z  0.303
2015 Zhao Z, Jin VX, Huang Y, Guda C, Ruan J. Frontiers in Integrative Genomics and Translational Bioinformatics. Biomed Research International. 2015: 725491. PMID 26605336 DOI: 10.1155/2015/725491  0.315
2015 Cornish A, Guda C. A Comparison of Variant Calling Pipelines Using Genome in a Bottle as a Reference. Biomed Research International. 2015: 456479. PMID 26539496 DOI: 10.1155/2015/456479  0.315
2015 Shen R, Wang X, Guda C. Discovering Distinct Functional Modules of Specific Cancer Types Using Protein-Protein Interaction Networks. Biomed Research International. 2015: 146365. PMID 26495282 DOI: 10.1155/2015/146365  0.566
2015 Li Y, Wang X, Vural S, Mishra NK, Cowan KH, Guda C. Exome analysis reveals differentially mutated gene signatures of stage, grade and subtype in breast cancers. Plos One. 10: e0119383. PMID 25803781 DOI: 10.1371/Journal.Pone.0119383  0.324
2015 Negi S, Pandey S, Srinivasan SM, Mohammed A, Guda C. LocSigDB: a database of protein localization signals. Database : the Journal of Biological Databases and Curation. 2015. PMID 25725059 DOI: 10.1093/Database/Bav003  0.333
2014 Chaturvedi NK, Mir RA, Band V, Joshi SS, Guda C. Experimental validation of predicted subcellular localizations of human proteins. Bmc Research Notes. 7: 912. PMID 25510246 DOI: 10.1186/1756-0500-7-912  0.354
2014 Shen R, Guda C. Applied graph-mining algorithms to study biomolecular interaction networks. Biomed Research International. 2014: 439476. PMID 24800226 DOI: 10.1155/2014/439476  0.54
2014 Goonesekere NC, Wang X, Ludwig L, Guda C. A meta analysis of pancreatic microarray datasets yields new targets as cancer genes and biomarkers. Plos One. 9: e93046. PMID 24740004 DOI: 10.1371/Journal.Pone.0093046  0.333
2013 Shukla A, Chaturvedi NK, Joshi SS, Bierman P, Cornish A, Pandey S, Guda C. The Role Of PRDM1 and Its Interacting Proteins In The Pathogenesis Of Chronic Lymphocytic Leukemia Blood. 122: 2865-2865. DOI: 10.1182/Blood.V122.21.2865.2865  0.327
2013 Zhang W, Klinkebiel D, Pandey S, Wang D, Liu S, Guda C, Odunsi K, Karpf AR. Abstract B12: Genomic and epigenomic characterization of global DNA hypomethylation in human epithelial ovarian cancer Clinical Cancer Research. 19. DOI: 10.1158/1078-0432.Ovca13-B12  0.337
2012 Shen R, Goonesekere NC, Guda C. Mining functional subgraphs from cancer protein-protein interaction networks. Bmc Systems Biology. 6: S2. PMID 23282132 DOI: 10.1186/1752-0509-6-S3-S2  0.564
2012 King BR, Vural S, Pandey S, Barteau A, Guda C. ngLOC: software and web server for predicting protein subcellular localization in prokaryotes and eukaryotes. Bmc Research Notes. 5: 351. PMID 22780965 DOI: 10.1186/1756-0500-5-351  0.354
2012 Gu SQ, Bakthavachalu B, Han J, Patil DP, Otsuka Y, Guda C, Schoenberg DR. Identification of the human PMR1 mRNA endonuclease as an alternatively processed product of the gene for peroxidasin-like protein. Rna (New York, N.Y.). 18: 1186-96. PMID 22543864 DOI: 10.1261/Rna.031369.111  0.348
2011 Mohammed A, Guda C. Computational Approaches for Automated Classification of Enzyme Sequences. Journal of Proteomics & Bioinformatics. 4: 147-152. PMID 22114367 DOI: 10.4172/Jpb.1000183  0.301
2009 Guda P, Chittur SV, Guda C. Comparative analysis of protein-protein interactions in cancer-associated genes. Genomics, Proteomics & Bioinformatics. 7: 25-36. PMID 19591789 DOI: 10.1016/S1672-0229(08)60030-3  0.382
2009 Guda C, King BR, Pal LR, Guda P. A top-down approach to infer and compare domain-domain interactions across eight model organisms. Plos One. 4: e5096. PMID 19333396 DOI: 10.1371/Journal.Pone.0005096  0.315
2009 King BR, Latham L, Guda C. Estimation of Subcellular Proteomes in Bacterial Species The Open Applied Informatics Journal. 3: 1-11. DOI: 10.2174/1874136300903010001  0.327
2008 King BR, Guda C. Semi-supervised learning for classification of protein sequence data Scientific Programming. 16: 5-29. DOI: 10.1155/2008/795010  0.341
2007 Saski C, Lee SB, Fjellheim S, Guda C, Jansen RK, Luo H, Tomkins J, Rognli OA, Daniell H, Clarke JL. Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 115: 571-90. PMID 17534593 DOI: 10.1007/S00122-007-0567-4  0.312
2007 King BR, Guda C. ngLOC: an n-gram-based Bayesian method for estimating the subcellular proteomes of eukaryotes. Genome Biology. 8: R68. PMID 17472741 DOI: 10.1186/Gb-2007-8-5-R68  0.315
2007 Guda P, Subramaniam S, Guda C. Mitoproteome: human heart mitochondrial protein sequence database. Methods in Molecular Biology (Clifton, N.J.). 357: 375-83. PMID 17172703 DOI: 10.1385/1-59745-214-9:375  0.353
2006 Pal LR, Guda C. Tracing the origin of functional and conserved domains in the human proteome: implications for protein evolution at the modular level. Bmc Evolutionary Biology. 6: 91. PMID 17090320 DOI: 10.1186/1471-2148-6-91  0.31
2006 Acquaah-Mensah GK, Leach SM, Guda C. Predicting the subcellular localization of human proteins using machine learning and exploratory data analysis. Genomics, Proteomics & Bioinformatics. 4: 120-33. PMID 16970551 DOI: 10.1016/S1672-0229(06)60023-5  0.328
2006 Guda C. pTARGET: a web server for predicting protein subcellular localization. Nucleic Acids Research. 34: W210-3. PMID 16844995 DOI: 10.1093/Nar/Gkl093  0.355
2006 Daniell H, Lee SB, Grevich J, Saski C, Quesada-Vargas T, Guda C, Tomkins J, Jansen RK. Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum lycopersicum and comparative analyses with other Solanaceae genomes. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 112: 1503-18. PMID 16575560 DOI: 10.1007/S00122-006-0254-X  0.306
2005 Guda C, Subramaniam S. pTARGET [corrected] a new method for predicting protein subcellular localization in eukaryotes. Bioinformatics (Oxford, England). 21: 3963-9. PMID 16144808 DOI: 10.1093/Bioinformatics/Bti650  0.331
2005 Guda C, Subramaniam S. Erratum: pTARGET: A new method for predicting protein subcellular localization in eukaryotes (Bioinformatics) vol. 21(21) (3963-3969)) Bioinformatics. 21. DOI: 10.1093/Bioinformatics/Bti758  0.314
2004 Guda C, Guda P, Fahy E, Subramaniam S. MITOPRED: a web server for the prediction of mitochondrial proteins. Nucleic Acids Research. 32: W372-4. PMID 15215413 DOI: 10.1093/Nar/Gkh374  0.341
2004 Guda C, Fahy E, Subramaniam S. MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins. Bioinformatics (Oxford, England). 20: 1785-94. PMID 15037509 DOI: 10.1093/Bioinformatics/Bth171  0.323
2002 Lesley SA, Kuhn P, Godzik A, Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, ... ... Guda C, et al. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proceedings of the National Academy of Sciences of the United States of America. 99: 11664-9. PMID 12193646 DOI: 10.1073/Pnas.142413399  0.343
1995 Zhang X, Guda C, Datta R, Dute R, Urry DW, Daniell H. Nuclear expression of an environmentally friendly synthetic protein based polymer gene in tobacco cells Biotechnology Letters. 17: 1279-1284. DOI: 10.1007/Bf00189210  0.31
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