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Ehud Y. Shapiro - Publications

Affiliations: 
BCH Biological Chemistry Weizmann Institute of Science, Rehovot, Israel 
Area:
Biochemistry, Cell Biology, Oncology, Genetics
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Regev A, Teichmann SA, Lander ES, Amit I, Benoist C, Birney E, Bodenmiller B, Campbell PJ, Carninci P, Clatworthy M, Clevers H, Deplancke B, Dunham I, Eberwine J, Eils R, ... ... Shapiro E, et al. Science Forum: The Human Cell Atlas. Elife. 6. PMID 29206104 DOI: 10.7554/Elife.27041  0.337
2016 Biezuner T, Spiro A, Raz O, Amir S, Milo L, Adar R, Chapal-Ilani N, Berman V, Fried Y, Ainbinder E, Cohen G, M Barr H, Halaban R, Shapiro E. A generic, cost-effective and scalable cell lineage analysis platform. Genome Research. PMID 27558250 DOI: 10.1101/Gr.202903.115  0.362
2016 Spiro A, Shapiro E. Accuracy of Answers to Cell Lineage Questions Depends on Single-Cell Genomics Data Quality and Quantity. Plos Computational Biology. 12: e1004983. PMID 27295404 DOI: 10.1371/Journal.Pcbi.1004983  0.302
2015 Yehezkel TB, Rival A, Raz O, Cohen R, Marx Z, Camara M, Dubern JF, Koch B, Heeb S, Krasnogor N, Delattre C, Shapiro E. Synthesis and cell-free cloning of DNA libraries using programmable microfluidics. Nucleic Acids Research. PMID 26481354 DOI: 10.1093/Nar/Gkv1087  0.361
2014 Spiro A, Cardelli L, Shapiro E. Lineage grammars: describing, simulating and analyzing population dynamics. Bmc Bioinformatics. 15: 249. PMID 25047682 DOI: 10.1186/1471-2105-15-249  0.303
2013 Chapal-Ilani N, Maruvka YE, Spiro A, Reizel Y, Adar R, Shlush LI, Shapiro E. Comparing algorithms that reconstruct cell lineage trees utilizing information on microsatellite mutations. Plos Computational Biology. 9: e1003297. PMID 24244121 DOI: 10.1371/Journal.Pcbi.1003297  0.313
2013 Shapiro E, Ran T. DNA computing: Molecules reach consensus. Nature Nanotechnology. 8: 703-5. PMID 24091452 DOI: 10.1038/Nnano.2013.202  0.366
2013 Shapiro E, Biezuner T, Linnarsson S. Single-cell sequencing-based technologies will revolutionize whole-organism science. Nature Reviews. Genetics. 14: 618-30. PMID 23897237 DOI: 10.1038/Nrg3542  0.32
2013 Kahan-Hanum M, Douek Y, Adar R, Shapiro E. A library of programmable DNAzymes that operate in a cellular environment. Scientific Reports. 3: 1535. PMID 23525068 DOI: 10.1038/Srep01535  0.641
2012 Ben Yehezkel T, Biezuner T, Linshiz G, Mazor Y, Shapiro E. Programmable in vivo selection of arbitrary DNA sequences. Plos One. 7: e47795. PMID 23155373 DOI: 10.1371/Journal.Pone.0047795  0.323
2012 Shapiro E. A mechanical Turing machine: blueprint for a biomolecular computer. Interface Focus. 2: 497-503. PMID 22649583 DOI: 10.1098/Rsfs.2011.0118  0.307
2012 Linshiz G, Yehezkel TB, Shapiro E. Recursive construction of perfect DNA molecules and libraries from imperfect oligonucleotides. Methods in Molecular Biology (Clifton, N.J.). 852: 151-63. PMID 22328432 DOI: 10.1007/978-1-61779-564-0_12  0.311
2012 Yehezkel TB, Linshiz G, Shapiro E. De novo DNA synthesis using single-molecule PCR. Methods in Molecular Biology (Clifton, N.J.). 852: 35-47. PMID 22328424 DOI: 10.1007/978-1-61779-564-0_4  0.307
2011 Gil B, Kahan-Hanum M, Skirtenko N, Adar R, Shapiro E. Detection of multiple disease indicators by an autonomous biomolecular computer. Nano Letters. 11: 2989-96. PMID 21671655 DOI: 10.1021/Nl2015872  0.644
2011 Yehezkel TB, Linshiz G, Kaplan S, Gronau I, Ravid S, Adar R, Shapiro E. Recursive construction and error correction of DNA molecules and libraries from synthetic and natural DNA. Methods in Enzymology. 498: 207-45. PMID 21601680 DOI: 10.1016/B978-0-12-385120-8.00010-3  0.302
2010 Shabi U, Kaplan S, Linshiz G, Benyehezkel T, Buaron H, Mazor Y, Shapiro E. Processing DNA molecules as text. Systems and Synthetic Biology. 4: 227-36. PMID 21189843 DOI: 10.1007/S11693-010-9059-Y  0.306
2010 Shlush LI, Chapal N, Adar R, Izraeli S, Rowe JM, Skorecki K, Shapiro E, Zuckerman T. Single-Cell Phylogenetic analysis provides Novel Insight Into Resistance Mechanisms In AML Blood. 116: 178-178. DOI: 10.1182/Blood.V116.21.178.178  0.305
2009 Ran T, Kaplan S, Shapiro E. Molecular implementation of simple logic programs. Nature Nanotechnology. 4: 642-8. PMID 19809454 DOI: 10.1038/Nnano.2009.203  0.338
2008 Shapiro E, Gil B. Cell biology. RNA computing in a living cell. Science (New York, N.Y.). 322: 387-8. PMID 18927381 DOI: 10.1126/Science.1165665  0.337
2008 Ben Yehezkel T, Linshiz G, Buaron H, Kaplan S, Shabi U, Shapiro E. De novo DNA synthesis using single molecule PCR. Nucleic Acids Research. 36: e107. PMID 18667587 DOI: 10.1093/Nar/Gkn457  0.307
2008 Linshiz G, Yehezkel TB, Kaplan S, Gronau I, Ravid S, Adar R, Shapiro E. Recursive construction of perfect DNA molecules from imperfect oligonucleotides. Molecular Systems Biology. 4: 191. PMID 18463615 DOI: 10.1038/Msb.2008.26  0.326
2008 Kahan M, Gil B, Adar R, Shapiro E. Towards molecular computers that operate in a biological environment Physica D: Nonlinear Phenomena. 237: 1165-1172. DOI: 10.1016/J.Physd.2008.01.027  0.365
2006 Shapiro E, Benenson Y. Tapping the computing power of biological molecules gives rise to tiny machines that can speak directly to living cells. Scientific American. 294: 44-51. PMID 16708487  0.638
2006 Shapiro E, Benenson Y. Bringing DNA computers to life Scientific American. 294: 44-51. DOI: 10.1038/Scientificamerican0907-40Sp  0.662
2005 Frumkin D, Wasserstrom A, Kaplan S, Feige U, Shapiro E. Genomic variability within an organism exposes its cell lineage tree. Plos Computational Biology. 1: e50. PMID 16261192 DOI: 10.1371/Journal.Pcbi.0010050  0.312
2004 Adar R, Benenson Y, Linshiz G, Rosner A, Tishby N, Shapiro E. Stochastic computing with biomolecular automata. Proceedings of the National Academy of Sciences of the United States of America. 101: 9960-5. PMID 15215499 DOI: 10.1073/Pnas.0400731101  0.677
2004 Benenson Y, Gil B, Ben-Dor U, Adar R, Shapiro E. An autonomous molecular computer for logical control of gene expression. Nature. 429: 423-9. PMID 15116117 DOI: 10.1038/Nature02551  0.705
2003 Benenson Y, Adar R, Paz-Elizur T, Livneh Z, Shapiro E. DNA molecule provides a computing machine with both data and fuel. Proceedings of the National Academy of Sciences of the United States of America. 100: 2191-6. PMID 12601148 DOI: 10.1073/Pnas.0535624100  0.678
2002 Regev A, Shapiro E. Cellular abstractions: Cells as computation Nature. 419: 343-343. PMID 12353013 DOI: 10.1038/419343A  0.332
2001 Priami C, Regev A, Shapiro E, Silverman W. Application of a stochastic name-passing calculus to representation and simulation of molecular processes Information Processing Letters. 80: 25-31. DOI: 10.1016/S0020-0190(01)00214-9  0.304
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