John M. Beggs - Publications

Affiliations: 
Indiana University, Bloomington, Bloomington, IN, United States 
Area:
network dynamics, LTP, computational neuroscience
Website:
http://biocomplexity.indiana.edu/research/info/beggs.php

57/89 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Salners T, Avila KE, Nicholson B, Myers CR, Beggs J, Dahmen KA. Recurrent activity in neuronal avalanches. Scientific Reports. 13: 4871. PMID 36964158 DOI: 10.1038/s41598-023-31851-x  0.377
2022 Beggs JM. Addressing skepticism of the critical brain hypothesis. Frontiers in Computational Neuroscience. 16: 703865. PMID 36185712 DOI: 10.3389/fncom.2022.703865  0.312
2022 Newman EL, Varley TF, Parakkattu VK, Sherrill SP, Beggs JM. Revealing the Dynamics of Neural Information Processing with Multivariate Information Decomposition. Entropy (Basel, Switzerland). 24. PMID 35885153 DOI: 10.3390/e24070930  0.776
2022 Antonello PC, Varley TF, Beggs J, Porcionatto M, Sporns O, Faber J. Self-organization of in vitro neuronal assemblies drives to complex network topology. Elife. 11. PMID 35708741 DOI: 10.7554/eLife.74921  0.828
2021 Sherrill SP, Timme NM, Beggs JM, Newman EL. Partial information decomposition reveals that synergistic neural integration is greater downstream of recurrent information flow in organotypic cortical cultures. Plos Computational Biology. 17: e1009196. PMID 34252081 DOI: 10.1371/journal.pcbi.1009196  0.755
2020 Varley TF, Sporns O, Puce A, Beggs J. Differential effects of propofol and ketamine on critical brain dynamics. Plos Computational Biology. 16: e1008418. PMID 33347455 DOI: 10.1371/journal.pcbi.1008418  0.759
2020 Ju H, Kim JZ, Beggs JM, Bassett DS. Network structure of cascading neural systems predicts stimulus propagation and recovery. Journal of Neural Engineering. PMID 33036007 DOI: 10.1088/1741-2552/abbff1  0.469
2020 Ren N, Ito S, Hafizi H, Beggs JM, Stevenson IH. Model-based detection of putative synaptic connections from spike recordings with latency and type constraints. Journal of Neurophysiology. PMID 32937091 DOI: 10.1152/Jn.00066.2020  0.809
2020 Sherrill SP, Timme NM, Beggs JM, Newman EL. Correlated activity favors synergistic processing in local cortical networks in vitro at synaptically relevant timescales. Network Neuroscience (Cambridge, Mass.). 4: 678-697. PMID 32885121 DOI: 10.1162/netn_a_00141  0.783
2020 Ao Z, Cai H, Havert DJ, Wu Z, Gong Z, Beggs JM, Mackie K, Guo F. One-stop Microfluidic Assembly of Human Brain Organoids to Model Prenatal Cannabis Exposure. Analytical Chemistry. PMID 32070103 DOI: 10.1021/acs.analchem.0c00205  0.307
2019 Beggs JM. The Critically Tuned Cortex. Neuron. 104: 623-624. PMID 31751539 DOI: 10.1016/j.neuron.2019.10.039  0.376
2019 Faber SP, Timme NM, Beggs JM, Newman EL. Computation is concentrated in rich clubs of local cortical networks. Network Neuroscience (Cambridge, Mass.). 3: 384-404. PMID 30793088 DOI: 10.1162/netn_a_00069  0.8
2018 Hottowy P, Yeh F, Ito S, Skoczen A, Wiacek P, Mathieson K, Dabrowski W, Beggs J, Litke A. Mapping direct and indirect activation of cortical neurons by weak electrical pulses with massively parallel MEA-based electrical stimulation and recording Frontiers in Cellular Neuroscience. 12. DOI: 10.3389/Conf.Fncel.2018.38.00024  0.67
2017 Williams-García RV, Beggs JM, Ortiz G. Unveiling causal activity of complex networks Epl (Europhysics Letters). 119: 18003. DOI: 10.1209/0295-5075/119/18003  0.441
2016 Timme NM, Marshall NJ, Bennett N, Ripp M, Lautzenhiser E, Beggs JM. Criticality Maximizes Complexity in Neural Tissue. Frontiers in Physiology. 7: 425. PMID 27729870 DOI: 10.3389/fphys.2016.00425  0.775
2016 Hiolski EM, Ito S, Beggs JM, Lefebvre KA, Litke AM, Smith DR. Domoic acid disrupts the activity and connectivity of neuronal networks in organotypic brain slice cultures. Neurotoxicology. PMID 27506300 DOI: 10.1016/J.Neuro.2016.08.004  0.638
2016 Marshall N, Timme NM, Bennett N, Ripp M, Lautzenhiser E, Beggs JM. Analysis of Power Laws, Shape Collapses, and Neural Complexity: New Techniques and MATLAB Support via the NCC Toolbox. Frontiers in Physiology. 7: 250. PMID 27445842 DOI: 10.3389/fphys.2016.00250  0.749
2016 Wu J, Gao M, Rice SG, Tsang C, Beggs J, Turner D, Li G, Yang B, Xia K, Gao F, Qiu S, Liu Q, Kerrigan JF. Gap Junctions Contribute to Ictal/Interictal Genesis in Human Hypothalamic Hamartomas. Ebiomedicine. 8: 96-102. PMID 27428422 DOI: 10.1016/J.Ebiom.2016.04.026  0.359
2016 Timme NM, Ito S, Myroshnychenko M, Nigam S, Shimono M, Yeh FC, Hottowy P, Litke AM, Beggs JM. High-Degree Neurons Feed Cortical Computations. Plos Computational Biology. 12: e1004858. PMID 27159884 DOI: 10.1371/Journal.Pcbi.1004858  0.832
2016 Nakhnikian A, Ito S, Dwiel LL, Grasse LM, Rebec GV, Lauridsen LN, Beggs JM. A Novel Cross-Frequency Coupling Detection Method Using the Generalized Morse Wavelets. Journal of Neuroscience Methods. PMID 27129446 DOI: 10.1016/J.Jneumeth.2016.04.019  0.434
2016 Nigam S, Shimono M, Ito S, Yeh FC, Timme N, Myroshnychenko M, Lapish CC, Tosi Z, Hottowy P, Smith WC, Masmanidis SC, Litke AM, Sporns O, Beggs JM. Rich-Club Organization in Effective Connectivity among Cortical Neurons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 36: 670-84. PMID 26791200 DOI: 10.1523/Jneurosci.2177-15.2016  0.804
2014 Williams-García RV, Moore M, Beggs JM, Ortiz G. Quasicritical brain dynamics on a nonequilibrium Widom line. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 90: 062714. PMID 25615136 DOI: 10.1103/PhysRevE.90.062714  0.373
2014 Timme N, Ito S, Myroshnychenko M, Yeh FC, Hiolski E, Hottowy P, Beggs JM. Multiplex networks of cortical and hippocampal neurons revealed at different timescales. Plos One. 9: e115764. PMID 25536059 DOI: 10.1186/1471-2202-15-S1-P212  0.824
2014 Shimono M, Beggs JM. Functional Clusters, Hubs, and Communities in the Cortical Microconnectome. Cerebral Cortex (New York, N.Y. : 1991). PMID 25336598 DOI: 10.1093/cercor/bhu252  0.558
2014 Ito S, Yeh FC, Hiolski E, Rydygier P, Gunning DE, Hottowy P, Timme N, Litke AM, Beggs JM. Large-scale, high-resolution multielectrode-array recording depicts functional network differences of cortical and hippocampal cultures. Plos One. 9: e105324. PMID 25126851 DOI: 10.1371/Journal.Pone.0105324  0.82
2014 Nakhnikian A, Rebec GV, Grasse LM, Dwiel LL, Shimono M, Beggs JM. Behavior modulates effective connectivity between cortex and striatum. Plos One. 9: e89443. PMID 24618981 DOI: 10.1371/Journal.Pone.0089443  0.338
2014 Timme N, Alford W, Flecker B, Beggs JM. Synergy, redundancy, and multivariate information measures: an experimentalist's perspective. Journal of Computational Neuroscience. 36: 119-40. PMID 23820856 DOI: 10.1007/s10827-013-0458-4  0.738
2014 Nigam S, Sporns O, Shimono M, Beggs JM. Patterns of information flow in local cortical networks Bmc Neuroscience. 15. DOI: 10.1186/1471-2202-15-S1-P213  0.711
2014 Shimono M, Beggs JM. Network community, clusters and hubs in cortical micro circuits Bmc Neuroscience. 15. DOI: 10.1186/1471-2202-15-S1-F2  0.522
2013 Gunning DE, Beggs JM, Dabrowski W, Hottowy P, Kenney CJ, Sher A, Litke AM, Mathieson K. Dense arrays of micro-needles for recording and electrical stimulation of neural activity in acute brain slices. Journal of Neural Engineering. 10: 016007. PMID 23234809 DOI: 10.1088/1741-2560/10/1/016007  0.391
2013 Beggs JM. Neuronal networks: Focus amidst the noise Nature Physics. 9: 533-534. DOI: 10.1038/nphys2707  0.47
2013 Peng J, Beggs JM. Attaining and maintaining criticality in a neuronal network model Physica a: Statistical Mechanics and Its Applications. 392: 1611-1620. DOI: 10.1016/j.physa.2012.11.013  0.411
2012 Friedman N, Ito S, Brinkman BA, Shimono M, DeVille RE, Dahmen KA, Beggs JM, Butler TC. Universal critical dynamics in high resolution neuronal avalanche data. Physical Review Letters. 108: 208102. PMID 23003192 DOI: 10.1103/Physrevlett.108.208102  0.656
2012 Beggs JM, Timme N. Being critical of criticality in the brain. Frontiers in Physiology. 3: 163. PMID 22701101 DOI: 10.3389/fphys.2012.00163  0.782
2011 Ito S, Hansen ME, Heiland R, Lumsdaine A, Litke AM, Beggs JM. Extending transfer entropy improves identification of effective connectivity in a spiking cortical network model. Plos One. 6: e27431. PMID 22102894 DOI: 10.1371/Journal.Pone.0027431  0.681
2011 Flecker B, Alford W, Beggs JM, Williams PL, Beer RD. Partial information decomposition as a spatiotemporal filter. Chaos (Woodbury, N.Y.). 21: 037104. PMID 21974667 DOI: 10.1063/1.3638449  0.333
2011 Shimono M, Beggs JM. Mesoscopic neuronal activity and neuronal network architecture Neuroscience Research. 71: e304. DOI: 10.1016/j.neures.2011.07.1326  0.535
2010 Hobbs JP, Smith JL, Beggs JM. Aberrant neuronal avalanches in cortical tissue removed from juvenile epilepsy patients. Journal of Clinical Neurophysiology : Official Publication of the American Electroencephalographic Society. 27: 380-6. PMID 21076327 DOI: 10.1097/WNP.0b013e3181fdf8d3  0.724
2010 Chen W, Hobbs JP, Tang A, Beggs JM. A few strong connections: optimizing information retention in neuronal avalanches. Bmc Neuroscience. 11: 3. PMID 20053290 DOI: 10.1186/1471-2202-11-3  0.792
2010 Yeh FC, Tang A, Hobbs JP, Hottowy P, Dabrowski W, Sher A, Litke A, Beggs JM. Maximum entropy approaches to living neural networks Entropy. 12: 89-106. DOI: 10.3390/E12010089  0.826
2008 Beggs J, Nakada S, Fenoglio K, Wu J, Coons S, Kerrigan JF. Hypothalamic hamartomas associated with epilepsy: ultrastructural features. Journal of Neuropathology and Experimental Neurology. 67: 657-68. PMID 18596547 DOI: 10.1097/Nen.0B013E31817D8085  0.311
2008 Tang A, Jackson D, Hobbs J, Chen W, Smith JL, Patel H, Prieto A, Petrusca D, Grivich MI, Sher A, Hottowy P, Dabrowski W, Litke AM, Beggs JM. A maximum entropy model applied to spatial and temporal correlations from cortical networks in vitro. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 505-18. PMID 18184793 DOI: 10.1523/Jneurosci.3359-07.2008  0.775
2008 Beggs JM. The criticality hypothesis: how local cortical networks might optimize information processing. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 366: 329-43. PMID 17673410 DOI: 10.1098/rsta.2007.2092  0.474
2008 Smith JL, Hobbs J, Tang A, Jackson D, Chen W, Patel H, Prieto A, Sher A, Litke A, Beggs JM. Network Comparison of Epileptogenic Human Cortex and Excited Rat Cortex Journal of Neurosurgery: Pediatrics. 1: A351-A352. DOI: 10.3171/PED/2008/1/4/PAPER4  0.684
2008 Tang A, Honey CJ, Hobbs J, Sher A, Litke AM, Sporns O, Beggs JM. Information flow in local cortical networks is not democratic Bmc Neuroscience. 9. DOI: 10.1186/1471-2202-9-S1-O3  0.71
2007 Hsu D, Tang A, Hsu M, Beggs JM. Simple spontaneously active Hebbian learning model: homeostasis of activity and connectivity, and consequences for learning and epileptogenesis. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 76: 041909. PMID 17995028 DOI: 10.1103/Physreve.76.041909  0.598
2007 Beggs J. Neuronal avalanche Scholarpedia. 2: 1344. DOI: 10.4249/scholarpedia.1344  0.357
2007 Tang A, Hobbs J, Chen W, Jackson D, Smith JL, Patel H, Beggs JM. A second-order maximum entropy model predicts correlated network states, but not their evolution over time Bmc Neuroscience. 8: P32. DOI: 10.1186/1471-2202-8-S2-P32  0.597
2007 Beggs JM. Theoretical neuroscience: How to build a critical mind Nature Physics. 3: 834-835. DOI: 10.1038/nphys799  0.306
2007 Beggs JM, Klukas J, Chen W. Connectivity and dynamics in local cortical networks Understanding Complex Systems. 2007: 91-116. DOI: 10.1007/978-3-540-71512-2_3  0.305
2006 Hsu D, Beggs JM. Neuronal avalanches and criticality: A dynamical model for homeostasis Neurocomputing. 69: 1134-1136. DOI: 10.1016/J.Neucom.2005.12.060  0.436
2005 Haldeman C, Beggs JM. Critical branching captures activity in living neural networks and maximizes the number of metastable States. Physical Review Letters. 94: 058101. PMID 15783702 DOI: 10.1103/PhysRevLett.94.058101  0.433
2004 Beggs JM, Plenz D. Neuronal avalanches are diverse and precise activity patterns that are stable for many hours in cortical slice cultures. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 24: 5216-29. PMID 15175392 DOI: 10.1523/JNEUROSCI.0540-04.2004  0.726
2003 Beggs JM, Plenz D. Neuronal avalanches in neocortical circuits. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 23: 11167-77. PMID 14657176 DOI: 10.1523/Jneurosci.23-35-11167.2003  0.741
2003 Johnson JD, Plenz D, Beggs J, Li W, Mieier M, Miltner N, Owen K. Analysis of spontaneous activity in cultured brain tissue using the discrete wavelet transform Proceedings - 3rd Ieee Symposium On Bioinformatics and Bioengineering, Bibe 2003. 60-66. DOI: 10.1109/BIBE.2003.1188930  0.536
2000 Beggs JM, Moyer JR, McGann JP, Brown TH. Prolonged synaptic integration in perirhinal cortical neurons. Journal of Neurophysiology. 83: 3294-8. PMID 10848549 DOI: 10.1152/Jn.2000.83.6.3294  0.749
1994 Beggs JM, Kairiss EW. Electrophysiology and morphology of neurons in rat perirhinal cortex. Brain Research. 665: 18-32. PMID 7882014 DOI: 10.1016/0006-8993(94)91147-9  0.412
Low-probability matches (unlikely to be authored by this person)
2008 Beggs JM. Erratum: How to build a critical mind Nature Physics. 4: 18-18. DOI: 10.1038/NPHYS836  0.299
2001 Beggs JM. A statistical theory of long-term potentiation and depression. Neural Computation. 13: 87-111. PMID 11177429 DOI: 10.1162/089976601300014646  0.288
2023 Zhang X, Dou Z, Kim SH, Upadhyay G, Havert D, Kang S, Kazemi K, Huang KY, Aydin O, Huang R, Rahman S, Ellis-Mohr A, Noblet HA, Lim KH, Chung HJ, ... ... Beggs JM, et al. Mind In Vitro Platforms: Versatile, Scalable, Robust, and Open Solutions to Interfacing with Living Neurons. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2306826. PMID 38161217 DOI: 10.1002/advs.202306826  0.272
2008 Hsu D, Chen W, Hsu M, Beggs JM. An open hypothesis: is epilepsy learned, and can it be unlearned? Epilepsy & Behavior : E&B. 13: 511-22. PMID 18573694 DOI: 10.1016/J.Yebeh.2008.05.007  0.264
2022 Fosque LJ, Alipour A, Zare M, Williams-García RV, Beggs JM, Ortiz G. Quasicriticality explains variability of human neural dynamics across life span. Frontiers in Computational Neuroscience. 16: 1037550. PMID 36532868 DOI: 10.3389/fncom.2022.1037550  0.237
2017 Rubchinsky LL, Ahn S, Klijn W, Cumming B, Yates S, Karakasis V, Peyser A, Woodman M, Diaz-Pier S, Deraeve J, Vassena E, Alexander W, Beeman D, Kudela P, Boatman-Reich D, ... ... Beggs J, et al. 26th Annual Computational Neuroscience Meeting (CNS*2017): Part 2 Bmc Neuroscience. 18. DOI: 10.1186/S12868-017-0371-2  0.209
2005 Beggs JM, Haldeman C. Beggs and Haldeman Reply: Physical Review Letters. 95. DOI: 10.1103/PHYSREVLETT.95.219802  0.186
2021 Fosque LJ, Williams-García RV, Beggs JM, Ortiz G. Evidence for Quasicritical Brain Dynamics. Physical Review Letters. 126: 098101. PMID 33750159 DOI: 10.1103/PhysRevLett.126.098101  0.184
2021 Alipour A, Beggs JM, Brown JW, James TW. A computational examination of the two-streams hypothesis: which pathway needs a longer memory? Cognitive Neurodynamics. 16: 149-165. PMID 35126775 DOI: 10.1007/s11571-021-09703-z  0.155
2023 Assuah FB, Emanuel B, Lacasse BM, Beggs J, Lou J, Motta FC, Nemzer LR, Worth R, Cravens GD. A Literature Review of Similarities Between and Among Patients With Autism Spectrum Disorder and Epilepsy. Cureus. 15: e33946. PMID 36819340 DOI: 10.7759/cureus.33946  0.081
2015 Beggs J. Editorial: Can There Be a Physics of the Brain? Physical Review Letters. 114: 220001. PMID 26196602 DOI: 10.1103/PhysRevLett.114.220001  0.078
2015 Beggs J. Editorial: Can There Be a Physics of the Brain? Physical Review Letters. 114: 220001. PMID 26196602 DOI: 10.1103/PhysRevLett.114.220001  0.078
1995 Beggs JM. Research for the Upstream Petroleum Sector: The Crown Research Institute Concept Energy Exploration & Exploitation. 13: 245-252. DOI: 10.1177/0144598795013002-313  0.072
1990 Beggs JM, Challis GA, Cook RA. Basement geology of the Campbell Plateau: implications for correlation of the Campbell Magnetic Anomaly System New Zealand Journal of Geology & Geophysics. 33: 401-404. DOI: 10.1080/00288306.1990.10425696  0.06
1997 Nicolas E, Beggs JM, Haltiwanger BM, Taraschi TF. Direct evidence for the deoxyribonuclease activity of the plant ribosome inactivating protein gelonin. Febs Letters. 406: 162-4. PMID 9109409 DOI: 10.1016/S0014-5793(97)00267-6  0.057
2010 Dean KL, Beggs JM, Keane TP. Mid-level Managers, Organizational Context, and (Un)ethical Encounters Journal of Business Ethics. 97: 51-69. DOI: 10.1007/S10551-010-0495-0  0.052
2011 Showers VE, Showers LS, Beggs JM, Cox JE. Charitable giving expenditures and the faith factor. American Journal of Economics and Sociology. 70: 152-86. PMID 21322897 DOI: 10.1111/j.1536-7150.2010.00767.x  0.051
1988 Beggs JM, Doolittle DC. Mintzberg revisited: A study of chief executive officers Leadership & Organization Development Journal. 9: 17-21. DOI: 10.1108/eb053648  0.048
1979 Adams CJ, Morris PA, Beggs JM. Age and correlation of volcanic rocks of Campbell Island and metamorphic basement of the Campbell plateau, south-west Pacific. New Zealand Journal of Geology & Geophysics. 22: 679-691.  0.048
1998 Nicolas E, Beggs JM, Haltiwanger BM, Taraschi TF. A new class of DNA glycosylase/apurinic/apyrimidinic lyases that act on specific adenines in single-stranded DNA. The Journal of Biological Chemistry. 273: 17216-20. PMID 9642291 DOI: 10.1074/Jbc.273.27.17216  0.042
2005 Jernigan IE, Beggs JM. An examination of satisfaction with my supervisor and organizational commitment Journal of Applied Social Psychology. 35: 2171-2192. DOI: 10.1111/j.1559-1816.2005.tb02214.x  0.041
2000 Nicolas E, Beggs JM, Taraschi TF. Gelonin is an unusual DNA glycosylase that removes adenine from single-stranded DNA, normal base pairs and mismatches. The Journal of Biological Chemistry. 275: 31399-406. PMID 10906135 DOI: 10.1074/Jbc.M004505200  0.034
1990 Cook RA, Beggs JM. Wildcats needed in Campbell plateau basins Oil and Gas Journal. 88: 52-54.  0.031
1989 Beggs JM, Lane MS. Corporate goal structures and business students: A comparative study of values Journal of Business Ethics. 8: 471-478. DOI: 10.1007/BF00381813  0.029
1984 Beggs JM. Leadership-The NASA approach Long Range Planning. 17: 12-24.  0.028
1985 Beggs JM. The challenge of the US space station Space Policy. 1: 85-90.  0.025
2007 Beggs JM, Dean KL. Legislated ethics or ethics education?: Faculty views in the post-enron era Journal of Business Ethics. 71: 15-37. DOI: 10.1007/s10551-006-9123-4  0.025
2011 Jernigan E, Beggs JM. Sometimes a simple change isn't so simple Journal of the International Academy For Case Studies. 17: 33-47.  0.022
1978 Beggs JM. Geology of the metamorphic basement and late cretaceous oligocene sedimentary sequence of Campbell Island, Southwest Pacific Ocean Journal of the Royal Society of New Zealand. 8: 161-177. DOI: 10.1080/03036758.1978.10429389  0.012
1929 Beggs JM. Ether anesthesia Current Researches in Anesthesia and Analgesia. 8: 304-307.  0.012
2000 Taraschi TF, Beggs JM. Letter to the editor [2] Journal of Liposome Research. 10: 96-98.  0.01
1965 WAGGENER JD, BUNN SM, BEGGS J. THE DIFFUSION OF FERRITIN WITHIN THE PERIPHERAL NERVE SHEATH Journal of Neuropathology and Experimental Neurology. 24: 430-443. DOI: 10.1097/00005072-196507000-00005  0.01
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