Abdul Barakat - Publications

Affiliations: 
Mechanical and Aeronautical Engineering University of California, Davis, Davis, CA 
Area:
Biomedical Engineering, General Biophysics, Cell Biology

67 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Roselli N, Castagnino A, Pontrelli G, Natalini R, Barakat AI. Modeling ATP-mediated endothelial cell elongation on line patterns. Biomechanics and Modeling in Mechanobiology. PMID 35902488 DOI: 10.1007/s10237-022-01604-2  0.308
2022 Leclech C, Gonzalez-Rodriguez D, Villedieu A, Lok T, Déplanche AM, Barakat AI. Topography-induced large-scale antiparallel collective migration in vascular endothelium. Nature Communications. 13: 2797. PMID 35589751 DOI: 10.1038/s41467-022-30488-0  0.385
2021 Dessalles CA, Leclech C, Castagnino A, Barakat AI. Integration of substrate- and flow-derived stresses in endothelial cell mechanobiology. Communications Biology. 4: 764. PMID 34155305 DOI: 10.1038/s42003-021-02285-w  0.418
2021 Leclech C, Barakat AI. Is there a universal mechanism of cell alignment in response to substrate topography? Cytoskeleton (Hoboken, N.J.). PMID 33843154 DOI: 10.1002/cm.21661  0.333
2021 Dessalles CA, Babataheri A, Barakat AI. Pericyte mechanics and mechanobiology. Journal of Cell Science. 134. PMID 33753399 DOI: 10.1242/jcs.240226  0.336
2019 Hogan B, Shen Z, Zhang H, Misbah C, Barakat AI. Shear stress in the microvasculature: influence of red blood cell morphology and endothelial wall undulation. Biomechanics and Modeling in Mechanobiology. PMID 30840162 DOI: 10.1007/s10237-019-01130-8  0.411
2019 Barakat AI, Natale CF, Leclech C, Lafaurie-Janvore J, Babataheri A. Substrate regulation of vascular endothelial cell morphology and alignment Computer Methods in Biomechanics and Biomedical Engineering. 22: S365-S366. DOI: 10.1080/10255842.2020.1714946  0.326
2018 Zhang H, Shen Z, Hogan B, Barakat AI, Misbah C. ATP Release by Red Blood Cells under Flow: Model and Simulations. Biophysical Journal. PMID 30447988 DOI: 10.1016/j.bpj.2018.09.033  0.328
2018 Di Costanzo E, Barakat AI, Pontrelli G. Effect of flow on ATP/ADP concentration at the endothelial cell surface: interplay between shear stress and mass transport Zamm - Journal of Applied Mathematics and Mechanics / Zeitschrift FüR Angewandte Mathematik Und Mechanik. 98: 1493-1502. DOI: 10.1002/zamm.201700372  0.385
2017 Kheloufi M, Vion AC, Hammoutene A, Poisson J, Lasselin J, Devue C, Pic I, Dupont N, Busse J, Stark K, Lafaurie-Janvore J, Barakat AI, Loyer X, Souyri M, Viollet B, et al. Endothelial autophagic flux hampers atherosclerotic lesion development. Autophagy. 1-6. PMID 29157095 DOI: 10.1080/15548627.2017.1395114  0.336
2017 Vion AC, Kheloufi M, Hammoutene A, Poisson J, Lasselin J, Devue C, Pic I, Dupont N, Busse J, Stark K, Lafaurie-Janvore J, Barakat AI, Loyer X, Souyri M, Viollet B, et al. Autophagy is required for endothelial cell alignment and atheroprotection under physiological blood flow. Proceedings of the National Academy of Sciences of the United States of America. PMID 28973855 DOI: 10.1073/pnas.1702223114  0.324
2017 Lecarpentier E, Bhatt M, Bertin G, Deloison B, Salomon L, Deloron P, Fournier T, Barakat A, Tsatsaris V. P 1 Computational fluid dynamic simulations of maternal circulation – Wall shear stress in the human placenta and its biological implications Pregnancy Hypertension: An International Journal of Women's Cardiovascular Health. 9: 36-37. DOI: 10.1016/J.Preghy.2017.07.080  0.417
2016 Antoine EE, Cornat FP, Barakat AI. The stentable in vitro artery: an instrumented platform for endovascular device development and optimization. Journal of the Royal Society, Interface. 13. PMID 28003530 DOI: 10.1098/rsif.2016.0834  0.332
2016 Gonzalez-Rodriguez D, Guillou L, Cornat F, Lafaurie-Janvore J, Babataheri A, de Langre E, Barakat AI, Husson J. Mechanical Criterion for the Rupture of a Cell Membrane under Compression. Biophysical Journal. 111: 2711-2721. PMID 28002747 DOI: 10.1016/j.bpj.2016.11.001  0.32
2016 Lecarpentier E, Atallah A, Guibourdenche J, Hebert-Schuster M, Vieillefosse S, Chissey A, Haddad B, Pidoux G, Evain-Brion D, Barakat A, Fournier T, Tsatsaris V. Fluid Shear Stress Promotes Placental Growth Factor Upregulation in Human Syncytiotrophoblast Through the cAMP-PKA Signaling Pathway. Hypertension (Dallas, Tex. : 1979). PMID 27698065 DOI: 10.1161/HYPERTENSIONAHA.116.07890  0.383
2016 Lafaurie-Janvore J, Antoine EE, Perkins SJ, Babataheri A, Barakat AI. A simple microfluidic device to study cell-scale endothelial mechanotransduction. Biomedical Microdevices. 18: 63. PMID 27402497 DOI: 10.1007/s10544-016-0090-y  0.456
2016 Guillou L, Babataheri A, Puech PH, Barakat AI, Husson J. Dynamic monitoring of cell mechanical properties using profile microindentation. Scientific Reports. 6: 21529. PMID 26857265 DOI: 10.1038/Srep21529  0.441
2016 Gouget CL, Hwang Y, Barakat AI. Model of cellular mechanotransduction via actin stress fibers. Biomechanics and Modeling in Mechanobiology. 15: 331-44. PMID 26081725 DOI: 10.1007/S10237-015-0691-Z  0.747
2015 Hogan B, Babataheri A, Hwang Y, Barakat AI, Husson J. Characterizing cell adhesion by using micropipette aspiration. Biophysical Journal. 109: 209-19. PMID 26200857 DOI: 10.1016/J.Bpj.2015.06.015  0.702
2014 Hwang Y, Kumar P, Barakat AI. Intracellular regulation of cell signaling cascades: how location makes a difference. Journal of Mathematical Biology. 69: 213-42. PMID 23774809 DOI: 10.1007/S00285-013-0701-7  0.648
2014 Lecarpentier E, Bhatt M, Fournier T, Barakat A, Tsatsaris V. Numerical simulations of maternal blood flows in the human placenta: estimation of the wall shear stress exerted on the syncytiotrophoblast Placenta. 35: A105. DOI: 10.1016/J.Placenta.2014.06.343  0.478
2013 Barakat AI, Gojova A. Role of Ion channels in cellular mechanotransduction - Lessons from the vascular endothelium Cellular Mechanotransduction: Diverse Perspectives From Molecules to Tissues. 161-180. DOI: 10.1017/CBO9781139195874.007  0.441
2013 Barakat AI. Blood flow and arterial endothelial dysfunction: Mechanisms and implications Comptes Rendus Physique. 14: 479-496. DOI: 10.1016/j.crhy.2013.05.003  0.34
2012 Hwang Y, Gouget CL, Barakat AI. Mechanisms of cytoskeleton-mediated mechanical signal transmission in cells. Communicative & Integrative Biology. 5: 538-42. PMID 23336020 DOI: 10.4161/Cib.21633  0.692
2012 Hwang Y, Barakat AI. Dynamics of mechanical signal transmission through prestressed stress fibers. Plos One. 7: e35343. PMID 22514731 DOI: 10.1371/Journal.Pone.0035343  0.688
2012 Morgan JT, Wood JA, Shah NM, Hughbanks ML, Russell P, Barakat AI, Murphy CJ. Integration of basal topographic cues and apical shear stress in vascular endothelial cells. Biomaterials. 33: 4126-35. PMID 22417618 DOI: 10.1016/J.Biomaterials.2012.02.047  0.36
2012 Hwang Y, Barakat AI. Correction: Dynamics of Mechanical Signal Transmission through Prestressed Stress Fibers Plos One. 7. DOI: 10.1371/Annotation/5Eb90275-B1A3-4743-A75A-Dc3E5D97C4Fe  0.644
2012 Hwang Y, Kumar P, Barakat AI. Spatial Sensitivity of the Map Kinase Signaling Pathway in the Cellular Cytoplasm Biophysical Journal. 102: 668a. DOI: 10.1016/J.Bpj.2011.11.3638  0.642
2011 Morgan JT, Pfeiffer ER, Thirkill TL, Kumar P, Peng G, Fridolfsson HN, Douglas GC, Starr DA, Barakat AI. Nesprin-3 regulates endothelial cell morphology, perinuclear cytoskeletal architecture, and flow-induced polarization. Molecular Biology of the Cell. 22: 4324-34. PMID 21937718 DOI: 10.1091/Mbc.E11-04-0287  0.383
2011 Mazzag B, Barakat AI. The effect of noisy flow on endothelial cell mechanotransduction: a computational study. Annals of Biomedical Engineering. 39: 911-21. PMID 20963495 DOI: 10.1007/s10439-010-0181-5  0.358
2009 Choi HW, Barakat AI. Modulation of ATP/ADP concentration at the endothelial cell surface by flow: effect of cell topography. Annals of Biomedical Engineering. 37: 2459-68. PMID 19763828 DOI: 10.1007/s10439-009-9793-z  0.313
2008 Barakat AI. Dragging along: the glycocalyx and vascular endothelial cell mechanotransduction. Circulation Research. 102: 747-8. PMID 18403731 DOI: 10.1161/CIRCRESAHA.108.174839  0.327
2008 Cao TC, Thirkill TL, Wells M, Barakat AI, Douglas GC. Trophoblasts and shear stress induce an asymmetric distribution of icam-1 in uterine endothelial cells. American Journal of Reproductive Immunology (New York, N.Y. : 1989). 59: 167-81. PMID 18211542 DOI: 10.1111/j.1600-0897.2007.00542.x  0.455
2008 Tsou JK, Liu J, Barakat AI, Insana MF. Role of ultrasonic shear rate estimation errors in assessing inflammatory response and vascular risk. Ultrasound in Medicine & Biology. 34: 963-72. PMID 18207310 DOI: 10.1016/J.Ultrasmedbio.2007.11.010  0.305
2008 Chang E, O'Donnell ME, Barakat AI. Shear stress and 17β-estradiol modulate cerebral microvascular endothelial Na-K-Cl cotransporter and Na/H exchanger protein levels American Journal of Physiology - Cell Physiology. 294: C363-C371. PMID 17959724 DOI: 10.1152/Ajpcell.00045.2007  0.316
2007 Thirkill TL, Cao T, Stout M, Blankenship TN, Barakat A, Douglas GC. MUC1 is involved in trophoblast transendothelial migration. Biochimica Et Biophysica Acta. 1773: 1007-14. PMID 17509701 DOI: 10.1016/J.Bbamcr.2007.04.006  0.431
2007 Choi HW, Ferrara KW, Barakat AI. Modulation of ATP/ADP concentration at the endothelial surface by shear stress: effect of flow recirculation. Annals of Biomedical Engineering. 35: 505-16. PMID 17253149 DOI: 10.1007/S10439-006-9247-9  0.326
2007 Seo T, Barakat A. Numerical analysis on the effect of wall shear stress around the ring drug-eluting stent Transactions of the Korean Society of Mechanical Engineers, B. 31: 21-28. DOI: 10.3795/Ksme-B.2007.31.1.021  0.359
2007 Barakat AI, Lieu DK, Gojova A. Ion channels in shear stress sensing in vascular endothelium ion channels in vascular mechanotransduction Molecular Sensors For Cardiovascular Homeostasis. 155-170. DOI: 10.1007/978-0-387-47530-1_9  0.647
2006 Gautam M, Gojova A, Barakat AI. Flow-activated ion channels in vascular endothelium. Cell Biochemistry and Biophysics. 46: 277-84. PMID 17272853 DOI: 10.1385/CBB:46:3:277  0.304
2006 Gautam M, Shen Y, Thirkill TL, Douglas GC, Barakat AI. Flow-activated chloride channels in vascular endothelium. Shear stress sensitivity, desensitization dynamics, and physiological implications. The Journal of Biological Chemistry. 281: 36492-500. PMID 16973617 DOI: 10.1074/jbc.M605866200  0.36
2006 Barakat AI, Lieu DK, Gojova A. Secrets of the code: do vascular endothelial cells use ion channels to decipher complex flow signals? Biomaterials. 27: 671-8. PMID 16112724 DOI: 10.1016/J.Biomaterials.2005.07.036  0.69
2005 Choi HW, Barakat AI. Numerical study of the impact of non-Newtonian blood behavior on flow over a two-dimensional backward facing step. Biorheology. 42: 493-509. PMID 16369086  0.305
2005 Thirkill TL, Lowe K, Vedagiri H, Blankenship TN, Barakat AI, Douglas GC. Macaque trophoblast migration is regulated by RANTES. Experimental Cell Research. 305: 355-64. PMID 15817160 DOI: 10.1016/j.yexcr.2005.01.013  0.354
2005 Soghomonians A, Barakat AI, Thirkill TL, Douglas GC. Trophoblast migration under flow is regulated by endothelial cells. Biology of Reproduction. 73: 14-9. PMID 15744025 DOI: 10.1095/Biolreprod.104.036509  0.767
2005 Gojova A, Barakat AI. Vascular endothelial wound closure under shear stress: role of membrane fluidity and flow-sensitive ion channels. Journal of Applied Physiology (Bethesda, Md. : 1985). 98: 2355-62. PMID 15705727 DOI: 10.1152/japplphysiol.01136.2004  0.437
2005 Kim T, Barakat A, Seo T. Stent Design Using Computational Fluid Dynamics Transactions of the Korean Society of Mechanical Engineers B. 29: 1042-1048. DOI: 10.3795/Ksme-B.2005.29.9.1042  0.319
2004 Soghomonians A, Thirkill TL, Mariano NF, Barakat AI, Douglas GC. Effect of aqueous tobacco smoke extract and shear stress on PECAM-1 expression and cell motility in human uterine endothelial cells. Toxicological Sciences : An Official Journal of the Society of Toxicology. 81: 408-18. PMID 15240893 DOI: 10.1093/Toxsci/Kfh210  0.746
2004 Thirkill TL, Hendren SR, Soghomonians A, Mariano NF, Barakat AI, Douglas GC. Regulation of trophoblast beta1-integrin expression by contact with endothelial cells. Cell Communication and Signaling : Ccs. 2: 4. PMID 15189562 DOI: 10.1186/1478-811X-2-4  0.734
2004 Lieu DK, Pappone PA, Barakat AI. Differential membrane potential and ion current responses to different types of shear stress in vascular endothelial cells. American Journal of Physiology. Cell Physiology. 286: C1367-75. PMID 14761889 DOI: 10.1152/Ajpcell.00243.2003  0.673
2004 Choi HW, Barakat AI. Modulation of ATP/ADP concentration at the endothelial surface by shear stress: Effect of flow disturbance Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 26: 5065-5068.  0.357
2003 Barakat A, Lieu D. Differential responsiveness of vascular endothelial cells to different types of fluid mechanical shear stress. Cell Biochemistry and Biophysics. 38: 323-43. PMID 12794271 DOI: 10.1385/Cbb:38:3:323  0.702
2003 Mazzag BM, Tamaresis JS, Barakat AI. A model for shear stress sensing and transmission in vascular endothelial cells. Biophysical Journal. 84: 4087-101. PMID 12770912 DOI: 10.1016/S0006-3495(03)75134-0  0.715
2002 Soghomonians A, Barakat AI, Thirkill TL, Blankenship TN, Douglas GC. Effect of shear stress on migration and integrin expression in macaque trophoblast cells. Biochimica Et Biophysica Acta. 1589: 233-46. PMID 12031791 DOI: 10.1016/S0167-4889(02)00179-9  0.766
2002 Schachter LG, Lieu DK, Barakat AI. Stent-induced arterial flow disturbance - Whole vessel and cellular considerations Asme International Mechanical Engineering Congress and Exposition, Proceedings. 287-288. DOI: 10.1115/IMECE2002-32584  0.585
2002 Gray BL, Lieu DK, Collins SD, Smith RL, Barakat AI. Microchannel platform for the study of endothelial cell shape and function Biomedical Microdevices. 4: 9-16. DOI: 10.1023/A:1014211627166  0.639
2001 John K, Barakat AI. Modulation of ATP/ADP concentration at the endothelial surface by shear stress: Effect of flow-induced ATP release Annals of Biomedical Engineering. 29: 740-751. PMID 11599582 DOI: 10.1114/1.1397792  0.4
2001 Fisher AB, Chien S, Barakat AI, Nerem RM. Endothelial cellular response to altered shear stress American Journal of Physiology - Lung Cellular and Molecular Physiology. 281. PMID 11504676 DOI: 10.1152/Ajplung.2001.281.3.L529  0.474
2001 Barakat AI. A model for shear stress-induced deformation of a flow sensor on the surface of vascular endothelial cells Journal of Theoretical Biology. 210: 221-236. PMID 11371176 DOI: 10.1006/jtbi.2001.2290  0.38
2001 Suvatne J, Barakat AI, O'Donnell ME. Flow-induced expression of endothelial Na-K-Cl cotransport: Dependence on K+ and Cl- channels American Journal of Physiology - Cell Physiology. 280: C216-C227. PMID 11121393 DOI: 10.1152/Ajpcell.2001.280.1.C216  0.323
2000 Lum RM, Wiley LM, Barakat AI. Influence of different forms of fluid shear stress on vascular endothelial TGF-beta1 mRNA expression International Journal of Molecular Medicine. 5: 635-641. PMID 10812015 DOI: 10.3892/ijmm.5.6.635  0.364
1999 Barakat AI, Leaver EV, Pappone PA, Davies PF. A flow-activated chloride-selective membrane current in vascular endothelial cells Circulation Research. 85: 820-828. PMID 10532950 DOI: 10.1161/01.Res.85.9.820  0.314
1999 Barakat AI. Responsiveness of vascular endothelium to shear stress: Potential role of ion channels and cellular cytoskeleton (Review) International Journal of Molecular Medicine. 4: 323-332. PMID 10493972  0.477
1998 Cheer AY, Dwyer HA, Barakat AI, Sy E, Bice M. Computational study of the effect of geometric and flow parameters on the steady flow field at the rabbit aorto-celiac bifurcation Biorheology. 35: 415-435. PMID 10656050 DOI: 10.1016/S0006-355X(99)80020-1  0.325
1998 Barakat AI, Davies PF. Mechanisms of shear stress transmission and transduction in endothelial cells Chest. 114. PMID 9676631 DOI: 10.1378/Chest.114.1_Supplement.58S  0.462
1997 Barakat AI, Karino T, Colton CK. Microcinematographic studies of flow patterns in the excised rabbit aorta and its major branches. Biorheology. 34: 195-221. PMID 9474263 DOI: 10.1016/S0006-355X(97)00025-5  0.329
1997 Davies PF, Barbee KA, Volin MV, Robotewskyj A, Chen J, Joseph L, Griem ML, Wernick MN, Jacobs E, Polacek DC, dePaola N, Barakat AI. Spatial relationships in early signaling events of flow-mediated endothelial mechanotransduction. Annual Review of Physiology. 59: 527-49. PMID 9074776 DOI: 10.1146/Annurev.Physiol.59.1.527  0.415
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