Phillip Newmark - Publications

Affiliations: 
University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
Regeneration and germ cell development in planarians

63 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Diaz Soria CL, Lee J, Chong T, Coghlan A, Tracey A, Young MD, Andrews T, Hall C, Ng BL, Rawlinson K, Doyle SR, Leonard S, Lu Z, Bennett HM, Rinaldi G, ... Newmark PA, et al. Single-cell atlas of the first intra-mammalian developmental stage of the human parasite Schistosoma mansoni. Nature Communications. 11: 6411. PMID 33339816 DOI: 10.1038/s41467-020-20092-5  0.64
2020 Forsthoefel DJ, Cejda NI, Khan UW, Newmark PA. Cell-type diversity and regionalized gene expression in the planarian intestine. Elife. 9. PMID 32240093 DOI: 10.7554/eLife.52613  0.52
2019 Gao J, Yang N, Lewis FA, Yau P, Collins JJ, Sweedler JV, Newmark PA. A rotifer-derived paralytic compound prevents transmission of schistosomiasis to a mammalian host. Plos Biology. 17: e3000485. PMID 31622335 DOI: 10.1371/journal.pbio.3000485  0.8
2019 Rozario T, Quinn EB, Wang J, Davis RE, Newmark PA. Region-specific regulation of stem cell-driven regeneration in tapeworms. Elife. 8. PMID 31549962 DOI: 10.7554/eLife.48958  0.52
2019 Issigonis M, Newmark PA. From worm to germ: Germ cell development and regeneration in planarians. Current Topics in Developmental Biology. 135: 127-153. PMID 31155357 DOI: 10.1016/bs.ctdb.2019.04.001  0.4
2018 Saberi A, Gulyaeva AA, Brubacher JL, Newmark PA, Gorbalenya AE. A planarian nidovirus expands the limits of RNA genome size. Plos Pathogens. 14: e1007314. PMID 30383829 DOI: 10.1371/journal.ppat.1007314  0.52
2018 Wang B, Lee J, Li P, Saberi A, Yang H, Liu C, Zhao M, Newmark PA. Stem cell heterogeneity drives the parasitic life cycle of . Elife. 7. PMID 29988015 DOI: 10.7554/eLife.35449  0.52
2018 King RS, Newmark PA. Whole-Mount In Situ Hybridization of Planarians. Methods in Molecular Biology (Clifton, N.J.). 1774: 379-392. PMID 29916165 DOI: 10.1007/978-1-4939-7802-1_12  0.36
2018 Forsthoefel DJ, Ross KG, Newmark PA, Zayas RM. Fixation, Processing, and Immunofluorescent Labeling of Whole Mount Planarians. Methods in Molecular Biology (Clifton, N.J.). 1774: 353-366. PMID 29916163 DOI: 10.1007/978-1-4939-7802-1_10  0.76
2018 Rozario T, Newmark PA. Prospecting for Planarian Pluripotency. Cell. 173: 1566-1567. PMID 29906442 DOI: 10.1016/j.cell.2018.05.062  0.52
2017 Rouhana L, Tasaki J, Saberi A, Newmark PA. Genetic dissection of the planarian reproductive system through characterization of Schmidtea mediterranea CPEB homologs. Developmental Biology. PMID 28434803 DOI: 10.1016/j.ydbio.2017.04.008  0.52
2016 Roberts-Galbraith RH, Brubacher JL, Newmark PA. A functional genomics screen in planarians reveals regulators of whole-brain regeneration. Elife. 5. PMID 27612384 DOI: 10.7554/eLife.17002  0.6
2016 Iyer H, Issigonis M, Sharma PP, Extavour CG, Newmark PA. A premeiotic function for boule in the planarian Schmidtea mediterranea. Proceedings of the National Academy of Sciences of the United States of America. 113: E3509-18. PMID 27330085 DOI: 10.1073/pnas.1521341113  0.88
2016 Iyer H, Collins JJ, Newmark PA. NF-YB Regulates Spermatogonial Stem Cell Self-Renewal and Proliferation in the Planarian Schmidtea mediterranea. Plos Genetics. 12: e1006109. PMID 27304889 DOI: 10.1371/journal.pgen.1006109  0.88
2016 Saberi A, Jamal A, Beets I, Schoofs L, Newmark PA. GPCRs Direct Germline Development and Somatic Gonad Function in Planarians. Plos Biology. 14: e1002457. PMID 27163480 DOI: 10.1371/journal.pbio.1002457  0.88
2016 Collins JJ, Wendt GR, Iyer H, Newmark PA. Stem cell progeny contribute to the schistosome host-parasite interface. Elife. 5. PMID 27003592 DOI: 10.7554/eLife.12473  0.8
2016 Ong TH, Romanova EV, Roberts-Galbraith RH, Yang N, Zimmerman TA, Collins JJ, Lee JE, Kelleher NL, Newmark PA, Sweedler JV. Mass Spectrometry Imaging and Identification of Peptides Associated with Cephalic Ganglia Regeneration in Schmidtea mediterranea. The Journal of Biological Chemistry. 291: 8109-20. PMID 26884331 DOI: 10.1074/jbc.M115.709196  0.8
2015 Issigonis M, Newmark PA. Heal Thy Cell(f): A Single-Cell View of Regeneration. Developmental Cell. 35: 527-8. PMID 26651286 DOI: 10.1016/j.devcel.2015.11.019  0.88
2015 Collins JJ, Hou X, Romanova EV, Lambrus BG, Miller CM, Saberi A, Sweedler JV, Newmark PA. Correction: Genome-Wide Analyses Reveal a Role for Peptide Hormones in Planarian Germline Development. Plos Biology. 13: e1002234. PMID 26275013 DOI: 10.1371/journal.pbio.1002234  0.88
2015 Issigonis M, Newmark PA. Planarian 'kidneys' go with the flow. Elife. 4: e09353. PMID 26200528 DOI: 10.7554/eLife.09353  0.88
2015 Rozario T, Newmark PA. A confocal microscopy-based atlas of tissue architecture in the tapeworm Hymenolepis diminuta. Experimental Parasitology. 158: 31-41. PMID 26049090 DOI: 10.1016/j.exppara.2015.05.015  0.88
2015 Lambrus BG, Cochet-Escartin O, Gao J, Newmark PA, Collins EM, Collins JJ. Tryptophan hydroxylase Is Required for Eye Melanogenesis in the Planarian Schmidtea mediterranea. Plos One. 10: e0127074. PMID 26017970 DOI: 10.1371/journal.pone.0127074  0.8
2015 Roberts-Galbraith RH, Newmark PA. On the organ trail: insights into organ regeneration in the planarian. Current Opinion in Genetics & Development. 32: 37-46. PMID 25703843 DOI: 10.1016/j.gde.2015.01.009  0.6
2014 Forsthoefel DJ, Waters FA, Newmark PA. Generation of cell type-specific monoclonal antibodies for the planarian and optimization of sample processing for immunolabeling. Bmc Developmental Biology. 14: 45. PMID 25528559 DOI: 10.1186/s12861-014-0045-6  0.88
2014 Tharp ME, Collins JJ, Newmark PA. A lophotrochozoan-specific nuclear hormone receptor is required for reproductive system development in the planarian. Developmental Biology. 396: 150-7. PMID 25278423 DOI: 10.1016/j.ydbio.2014.09.024  0.88
2014 Rouhana L, Weiss JA, King RS, Newmark PA. PIWI homologs mediate histone H4 mRNA localization to planarian chromatoid bodies. Development (Cambridge, England). 141: 2592-601. PMID 24903754 DOI: 10.1242/dev.101618  0.88
2014 Brubacher JL, Vieira AP, Newmark PA. Preparation of the planarian Schmidtea mediterranea for high-resolution histology and transmission electron microscopy. Nature Protocols. 9: 661-73. PMID 24556788 DOI: 10.1038/nprot.2014.041  0.52
2013 Wang B, Collins JJ, Newmark PA. Functional genomic characterization of neoblast-like stem cells in larval Schistosoma mansoni. Elife. 2: e00768. PMID 23908765 DOI: 10.7554/eLife.00768  0.8
2013 Sikes JM, Newmark PA. Restoration of anterior regeneration in a planarian with limited regenerative ability. Nature. 500: 77-80. PMID 23883929 DOI: 10.1038/nature12403  0.88
2013 Collins JJ, Newmark PA. It's no fluke: the planarian as a model for understanding schistosomes. Plos Pathogens. 9: e1003396. PMID 23874195 DOI: 10.1371/journal.ppat.1003396  0.8
2013 Chong T, Collins JJ, Brubacher JL, Zarkower D, Newmark PA. A sex-specific transcription factor controls male identity in a simultaneous hermaphrodite. Nature Communications. 4: 1814. PMID 23652002 DOI: 10.1038/ncomms2811  0.88
2013 King RS, Newmark PA. In situ hybridization protocol for enhanced detection of gene expression in the planarian Schmidtea mediterranea. Bmc Developmental Biology. 13: 8. PMID 23497040 DOI: 10.1186/1471-213X-13-8  0.88
2013 Rouhana L, Weiss JA, Forsthoefel DJ, Lee H, King RS, Inoue T, Shibata N, Agata K, Newmark PA. RNA interference by feeding in vitro-synthesized double-stranded RNA to planarians: methodology and dynamics. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 242: 718-30. PMID 23441014 DOI: 10.1002/dvdy.23950  0.52
2013 Collins JJ, Wang B, Lambrus BG, Tharp ME, Iyer H, Newmark PA. Adult somatic stem cells in the human parasite Schistosoma mansoni. Nature. 494: 476-9. PMID 23426263 DOI: 10.1038/nature11924  0.88
2013 Roberts-Galbraith RH, Newmark PA. Follistatin antagonizes activin signaling and acts with notum to direct planarian head regeneration. Proceedings of the National Academy of Sciences of the United States of America. 110: 1363-8. PMID 23297191 DOI: 10.1073/pnas.1214053110  0.6
2012 Forsthoefel DJ, James NP, Escobar DJ, Stary JM, Vieira AP, Waters FA, Newmark PA. An RNAi screen reveals intestinal regulators of branching morphogenesis, differentiation, and stem cell proliferation in planarians. Developmental Cell. 23: 691-704. PMID 23079596 DOI: 10.1016/j.devcel.2012.09.008  0.88
2012 King RS, Newmark PA. The cell biology of regeneration. The Journal of Cell Biology. 196: 553-62. PMID 22391035 DOI: 10.1083/jcb.201105099  0.88
2012 Rouhana L, Vieira AP, Roberts-Galbraith RH, Newmark PA. PRMT5 and the role of symmetrical dimethylarginine in chromatoid bodies of planarian stem cells. Development (Cambridge, England). 139: 1083-94. PMID 22318224 DOI: 10.1242/dev.076182  0.6
2012 Miller CM, Newmark PA. An insulin-like peptide regulates size and adult stem cells in planarians. The International Journal of Developmental Biology. 56: 75-82. PMID 22252538 DOI: 10.1387/ijdb.113443cm  0.88
2012 Zayas RM, Hernández A, Habermann B, Wang Y, Stary JM, Newmark PA. The planarian Schmidtea mediterranea as a model for epigenetic germ cell specification: Analysis of ESTs from the hermaphroditic strain (Proceedings of the National Academy of Sciences of the United States of America (2005) 102, 51 (18491-18496) DOI: 10.1073/pnas.0509507102) Proceedings of the National Academy of Sciences of the United States of America. 109: 19033-19034. DOI: 10.1073/pnas.1216290109  0.88
2011 Chong T, Stary JM, Wang Y, Newmark PA. Molecular markers to characterize the hermaphroditic reproductive system of the planarian Schmidtea mediterranea. Bmc Developmental Biology. 11: 69. PMID 22074376 DOI: 10.1186/1471-213X-11-69  0.88
2011 Forsthoefel DJ, Park AE, Newmark PA. Stem cell-based growth, regeneration, and remodeling of the planarian intestine. Developmental Biology. 356: 445-59. PMID 21664348 DOI: 10.1016/j.ydbio.2011.05.669  0.52
2011 Collins JJ, King RS, Cogswell A, Williams DL, Newmark PA. An atlas for Schistosoma mansoni organs and life-cycle stages using cell type-specific markers and confocal microscopy. Plos Neglected Tropical Diseases. 5: e1009. PMID 21408085 DOI: 10.1371/journal.pntd.0001009  0.88
2011 Cogswell AA, Collins JJ, Newmark PA, Williams DL. Whole mount in situ hybridization methodology for Schistosoma mansoni. Molecular and Biochemical Parasitology. 178: 46-50. PMID 21397637 DOI: 10.1016/j.molbiopara.2011.03.001  0.8
2010 Wang Y, Newmark PA. Visions: the art of science. Molecular Reproduction and Development. 77: 933. PMID 21104747 DOI: 10.1002/mrd.21246  1
2010 Collins JJ, Hou X, Romanova EV, Lambrus BG, Miller CM, Saberi A, Sweedler JV, Newmark PA. Genome-wide analyses reveal a role for peptide hormones in planarian germline development. Plos Biology. 8: e1000509. PMID 20967238 DOI: 10.1371/journal.pbio.1000509  0.88
2010 Zayas RM, Cebrià F, Guo T, Feng J, Newmark PA. The use of lectins as markers for differentiated secretory cells in planarians. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 239: 2888-97. PMID 20865784 DOI: 10.1002/dvdy.22427  0.88
2010 Wang Y, Stary JM, Wilhelm JE, Newmark PA. A functional genomic screen in planarians identifies novel regulators of germ cell development. Genes & Development. 24: 2081-92. PMID 20844018 DOI: 10.1101/gad.1951010  0.88
2009 Forsthoefel DJ, Newmark PA. Emerging patterns in planarian regeneration. Current Opinion in Genetics & Development. 19: 412-20. PMID 19574035 DOI: 10.1016/j.gde.2009.05.003  0.52
2008 Newmark PA, Wang Y, Chong T. Germ cell specification and regeneration in planarians. Cold Spring Harbor Symposia On Quantitative Biology. 73: 573-81. PMID 19022767 DOI: 10.1101/sqb.2008.73.022  1
2008 Reddien PW, Newmark PA, Sánchez Alvarado A. Gene nomenclature guidelines for the planarian Schmidtea mediterranea. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 237: 3099-101. PMID 18627099 DOI: 10.1002/dvdy.21623  0.88
2007 Cebrià F, Guo T, Jopek J, Newmark PA. Regeneration and maintenance of the planarian midline is regulated by a slit orthologue. Developmental Biology. 307: 394-406. PMID 17553481 DOI: 10.1016/j.ydbio.2007.05.006  0.96
2007 Wang Y, Zayas RM, Guo T, Newmark PA. nanos function is essential for development and regeneration of planarian germ cells. Proceedings of the National Academy of Sciences of the United States of America. 104: 5901-6. PMID 17376870 DOI: 10.1073/pnas.0609708104  0.88
2007 Cebrià F, Newmark PA. Morphogenesis defects are associated with abnormal nervous system regeneration following roboA RNAi in planarians. Development (Cambridge, England). 134: 833-7. PMID 17251262 DOI: 10.1242/dev.02794  0.96
2006 Guo T, Peters AH, Newmark PA. A Bruno-like gene is required for stem cell maintenance in planarians. Developmental Cell. 11: 159-69. PMID 16890156 DOI: 10.1016/j.devcel.2006.06.004  0.76
2005 Zayas RM, Hernández A, Habermann B, Wang Y, Stary JM, Newmark PA. The planarian Schmidtea mediterranea as a model for epigenetic germ cell specification: analysis of ESTs from the hermaphroditic strain. Proceedings of the National Academy of Sciences of the United States of America. 102: 18491-6. PMID 16344473 DOI: 10.1073/pnas.0509507102  0.88
2005 Cebrià F, Newmark PA. Planarian homologs of netrin and netrin receptor are required for proper regeneration of the central nervous system and the maintenance of nervous system architecture. Development (Cambridge, England). 132: 3691-703. PMID 16033796 DOI: 10.1242/dev.01941  0.96
2005 Zayas RM, Bold TD, Newmark PA. Spliced-leader trans-splicing in freshwater planarians. Molecular Biology and Evolution. 22: 2048-54. PMID 15972844 DOI: 10.1093/molbev/msi200  0.88
2003 Newmark PA, Reddien PW, Cebrià F, Sánchez Alvarado A. Ingestion of bacterially expressed double-stranded RNA inhibits gene expression in planarians. Proceedings of the National Academy of Sciences of the United States of America. 100: 11861-5. PMID 12917490 DOI: 10.1073/pnas.1834205100  0.88
2002 Sánchez Alvarado A, Newmark PA, Robb SM, Juste R. The Schmidtea mediterranea database as a molecular resource for studying platyhelminthes, stem cells and regeneration. Development (Cambridge, England). 129: 5659-65. PMID 12421706 DOI: 10.1242/dev.00167  0.88
2002 Newmark PA, Sánchez Alvarado A. Not your father's planarian: a classic model enters the era of functional genomics. Nature Reviews. Genetics. 3: 210-9. PMID 11972158 DOI: 10.1038/nrg759  0.88
1999 Sánchez Alvarado A, Newmark PA. Double-stranded RNA specifically disrupts gene expression during planarian regeneration. Proceedings of the National Academy of Sciences of the United States of America. 96: 5049-54. PMID 10220416 DOI: 10.1073/pnas.96.9.5049  0.88
1998 Sánchez Alvarado A, Newmark PA. The use of planarians to dissect the molecular basis of metazoan regeneration. Wound Repair and Regeneration : Official Publication of the Wound Healing Society [and] the European Tissue Repair Society. 6: 413-20. PMID 9824561 DOI: 10.1046/j.1524-475X.1998.60418.x  0.88
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