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Changbong Hyeon, Ph.D. - Publications

Affiliations: 
2000-2005 Chemical Physics University of Maryland, College Park, College Park, MD 
 2010- Korea Institute for Advanced Study 
Area:
Theoretical Biophysics
Website:
http://newton.kias.re.kr/~hyeoncb/
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88 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Cho SS, Green AT, Hyeon C, Thirumalai D. TMAO Destabilizes RNA Secondary Structure via Direct Hydrogen Bond Interactions. The Journal of Physical Chemistry. B. PMID 36602908 DOI: 10.1021/acs.jpcb.2c05434  0.543
2021 Cheung MS, Dima RI, Hyeon C. Tribute to Dave Thirumalai. The Journal of Physical Chemistry. B. 125: 13831-13833. PMID 34965732 DOI: 10.1021/acs.jpcb.1c10029  0.411
2021 Bak JH, Kim MH, Liu L, Hyeon C. A unified framework for inferring the multi-scale organization of chromatin domains from Hi-C. Plos Computational Biology. 17: e1008834. PMID 33724986 DOI: 10.1371/journal.pcbi.1008834  0.731
2020 Mugnai ML, Hyeon C, Hinczewski M, Thirumalai D. Theoretical perspectives on biological machines Reviews of Modern Physics. 92: 25001. DOI: 10.1103/Revmodphys.92.025001  0.635
2020 Hong H, Jo J, Hyeon C, Park H. Thermodynamic cost of synchronizing a population of beating cilia Journal of Statistical Mechanics: Theory and Experiment. 2020: 74001. DOI: 10.1088/1742-5468/Ab9E63  0.308
2020 Jung Y, Hyeon C, Ha B. Near-Θ Polymers in a Cylindrical Space Macromolecules. 53: 2412-2419. DOI: 10.1021/Acs.Macromol.9B02370  0.314
2019 Thirumalai D, Lorimer GH, Hyeon C. Iterative Annealing Mechanism Explains the Functions of the GroEL and RNA Chaperones. Protein Science : a Publication of the Protein Society. PMID 31800116 DOI: 10.1002/Pro.3795  0.414
2019 Liu L, Kim MH, Hyeon C. Heterogeneous Loop Model to Infer 3D Chromosome Structures from Hi-C. Biophysical Journal. PMID 31337548 DOI: 10.1016/J.Bpj.2019.06.032  0.308
2019 Thirumalai D, Hyeon C, Zhuravlev PI, Lorimer GH. Symmetry, Rigidity, and Allosteric Signaling: From Monomeric Proteins to Molecular Machines. Chemical Reviews. PMID 31017391 DOI: 10.1021/Acs.Chemrev.8B00760  0.565
2018 Liu L, Shi G, Thirumalai D, Hyeon C. Chain organization of human interphase chromosome determines the spatiotemporal dynamics of chromatin loci. Plos Computational Biology. 14: e1006617. PMID 30507936 DOI: 10.1371/Journal.Pcbi.1006617  0.514
2018 Shi G, Liu L, Hyeon C, Thirumalai D. Interphase human chromosome exhibits out of equilibrium glassy dynamics. Nature Communications. 9: 3161. PMID 30089831 DOI: 10.1038/S41467-018-05606-6  0.502
2018 Bak JH, Jang SJ, Hyeon C. Implications for human odor sensing revealed from the statistics of odorant-receptor interactions. Plos Computational Biology. 14: e1006175. PMID 29782484 DOI: 10.1371/Journal.Pcbi.1006175  0.727
2018 Thirumalai D, Hyeon C. Signalling networks and dynamics of allosteric transitions in bacterial chaperonin GroEL: implications for iterative annealing of misfolded proteins. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 373. PMID 29735736 DOI: 10.1098/Rstb.2017.0182  0.543
2017 Chakrabarti S, Hyeon C, Ye X, Lorimer GH, Thirumalai D. Molecular chaperones maximize the native state yield on biological times by driving substrates out of equilibrium. Proceedings of the National Academy of Sciences of the United States of America. PMID 29217641 DOI: 10.1073/Pnas.1712962114  0.579
2017 Lee Y, Thirumalai D, Hyeon C. Ultrasensitivity of water exchange kinetics to the size of metal ion. Journal of the American Chemical Society. PMID 28853881 DOI: 10.1021/Jacs.7B04198  0.503
2017 Reddy BJN, Tripathy S, Vershinin M, Tanenbaum M, Xu J, Mattson-Hoss M, Arabi K, Chapman D, Doolin T, Hyeon C, Gross SP. Heterogeneity in Kinesin function. Traffic (Copenhagen, Denmark). PMID 28731566 DOI: 10.1111/Tra.12504  0.323
2017 Hyeon C, Thirumalai D. Ripping RNA by Force Using Gaussian Network Models. The Journal of Physical Chemistry. B. 121: 3515-3522. PMID 28423909 DOI: 10.1021/Acs.Jpcb.6B09402  0.587
2017 Liu L, Hyeon C. Distinct Chain Organizing Principles of Proteins and RNA Biophysical Journal. 112: 369a. DOI: 10.1016/J.Bpj.2016.11.2001  0.34
2016 Hwang W, Lee IB, Hong SC, Hyeon C. Decoding Single Molecule Time Traces with Dynamic Disorder. Plos Computational Biology. 12: e1005286. PMID 28027304 DOI: 10.1371/Journal.Pcbi.1005286  0.364
2016 Jeon C, Hyeon C, Jung Y, Ha BY. How are molecular crowding and the spatial organization of a biopolymer interrelated. Soft Matter. PMID 27858047 DOI: 10.1039/C6Sm01924B  0.333
2016 Lee Y, Kim S, Choi S, Hyeon C. Ultraslow Water-Mediated Transmembrane Interactions Regulate the Activation of A2A Adenosine Receptor. Biophysical Journal. 111: 1180-91. PMID 27653477 DOI: 10.1016/J.Bpj.2016.08.002  0.312
2016 Hinczewski M, Hyeon C, Thirumalai D. Directly measuring single-molecule heterogeneity using force spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. PMID 27317744 DOI: 10.1073/Pnas.1518389113  0.728
2016 Liu L, Hyeon C. Contact Statistics Highlight Distinct Organizing Principles of Proteins and RNA. Biophysical Journal. 110: 2320-2327. PMID 27276250 DOI: 10.1016/J.Bpj.2016.04.020  0.398
2016 Kim S, Hyeon C. Effect of Internal Water Dynamics on the Activation Mechanism of β2-Adrenergic Receptors Biophysical Journal. 110: 89a. DOI: 10.1016/J.Bpj.2015.11.538  0.316
2016 Lee Y, Hyeon C. Effect of DMSO on Water Molecules Near Phospholipid Bilayer Surfaces Biophysical Journal. 110: 645a. DOI: 10.1016/J.Bpj.2015.11.3453  0.302
2016 Hwang W, Lee I, Hong S, Hyeon C. Decoding Dynamic Disorder in Single Molecule Data Biophysical Journal. 110: 188a. DOI: 10.1016/J.Bpj.2015.11.1048  0.36
2015 Kang H, Yoon YG, Thirumalai D, Hyeon C. Confinement-Induced Glassy Dynamics in a Model for Chromosome Organization. Physical Review Letters. 115: 198102. PMID 26588418 DOI: 10.1103/Physrevlett.115.198102  0.514
2015 Kang H, Toan NM, Hyeon C, Thirumalai D. Unexpected Swelling of Stiff DNA in a Polydisperse Crowded Environment. Journal of the American Chemical Society. 137: 10970-8. PMID 26267166 DOI: 10.1021/Jacs.5B04531  0.51
2015 Kim SE, Lee IB, Hyeon C, Hong SC. Deciphering Kinetic Information from Single-Molecule FRET Data That Show Slow Transitions. The Journal of Physical Chemistry. B. 119: 6974-8. PMID 25989531 DOI: 10.1021/Acs.Jpcb.5B03991  0.325
2015 Ryu JK, Min D, Rah SH, Kim SJ, Park Y, Kim H, Hyeon C, Kim HM, Jahn R, Yoon TY. Spring-loaded unraveling of a single SNARE complex by NSF in one round of ATP turnover. Science (New York, N.Y.). 347: 1485-9. PMID 25814585 DOI: 10.1126/Science.Aaa5267  0.305
2015 Lin JC, Yoon J, Hyeon C, Thirumalai D. Using simulations and kinetic network models to reveal the dynamics and functions of riboswitches. Methods in Enzymology. 553: 235-58. PMID 25726468 DOI: 10.1016/Bs.Mie.2014.10.062  0.593
2015 Kang H, Pincus PA, Hyeon C, Thirumalai D. Effects of macromolecular crowding on the collapse of biopolymers. Physical Review Letters. 114: 068303. PMID 25723249 DOI: 10.1103/Physrevlett.114.068303  0.506
2015 Lee Y, Choi S, Hyeon C. Communication over the network of binary switches regulates the activation of A2A adenosine receptor. Plos Computational Biology. 11: e1004044. PMID 25664580 DOI: 10.1371/Journal.Pcbi.1004044  0.311
2014 Bae W, Kim K, Min D, Ryu JK, Hyeon C, Yoon TY. Programmed folding of DNA origami structures through single-molecule force control. Nature Communications. 5: 5654. PMID 25469474 DOI: 10.1038/Ncomms6654  0.303
2014 Yoon J, Lin JC, Hyeon C, Thirumalai D. Dynamical transition and heterogeneous hydration dynamics in RNA. The Journal of Physical Chemistry. B. 118: 7910-9. PMID 24762118 DOI: 10.1021/Jp500643U  0.569
2014 Hyeon C, Hinczewski M, Thirumalai D. Evidence of disorder in biological molecules from single molecule pulling experiments. Physical Review Letters. 112: 138101. PMID 24745458 DOI: 10.1103/Physrevlett.112.138101  0.708
2014 Lin JC, Hyeon C, Thirumalai D. Sequence-dependent folding landscapes of adenine riboswitch aptamers. Physical Chemistry Chemical Physics : Pccp. 16: 6376-82. PMID 24366448 DOI: 10.1039/C3Cp53932F  0.566
2014 Yoon Y, Hyeon C. Brownian Dynamics Simulations of a Self-Avoiding Chain Model of a Chromosome in a Spherical Confinement Biophysical Journal. 106: 79a. DOI: 10.1016/J.Bpj.2013.11.512  0.313
2014 Bae W, Kim K, Min D, Ryu J, Hyeon C, Yoon T. Single Molecule Force Control Drives the Rapid Assembly of DNA Nanostructure Biophysical Journal. 106: 279a. DOI: 10.1016/J.Bpj.2013.11.1634  0.339
2014 Hyeon C, Denesyuk NA, Thirumalai D. Development and applications of coarse-grained models for RNA Israel Journal of Chemistry. DOI: 10.1002/Ijch.201400029  0.589
2013 Bae W, Choi MG, Hyeon C, Shin YK, Yoon TY. Correction to "Real-Time Observation of Multiple-Protein Complex Formation with Single-Molecule FRET". Journal of the American Chemical Society. 135: 16242. PMID 24131366 DOI: 10.1021/Ja409056B  0.304
2013 Hyeon C, Thirumalai D. Generalized iterative annealing model for the action of RNA chaperones. The Journal of Chemical Physics. 139: 121924. PMID 24089736 DOI: 10.1063/1.4818594  0.591
2013 Yoon J, Thirumalai D, Hyeon C. Urea-induced denaturation of preQ1-riboswitch. Journal of the American Chemical Society. 135: 12112-21. PMID 23863126 DOI: 10.1021/Ja406019S  0.576
2013 Bae W, Bae W, Choi MG, Hyeon C, Shin YK, Yoon TY. Real-time observation of multiple-protein complex formation with single-molecule FRET. Journal of the American Chemical Society. 135: 10254-7. PMID 23808880 DOI: 10.1021/Ja404276G  0.325
2013 Min D, Kim K, Hyeon C, Cho YH, Shin YK, Yoon TY. Mechanical unzipping and rezipping of a single SNARE complex reveals hysteresis as a force-generating mechanism. Nature Communications. 4: 1705. PMID 23591872 DOI: 10.1038/Ncomms2692  0.331
2013 Park K, Hyeon C. Counterion-Dependent Folding of Azoarcus Ribozyme by SAXS Profile based Hybrid Simulation Biophysical Journal. 104: 411a-412a. DOI: 10.1016/J.Bpj.2012.11.2295  0.403
2012 Lin JC, Hyeon C, Thirumalai D. RNA under tension: Folding Landscapes, Kinetic partitioning Mechanism, and Molecular Tensegrity. The Journal of Physical Chemistry Letters. 3: 3616-3625. PMID 23336034 DOI: 10.1021/Jz301537T  0.593
2012 Jana B, Hyeon C, Onuchic JN. The origin of minus-end directionality and mechanochemistry of Ncd motors. Plos Computational Biology. 8: e1002783. PMID 23166486 DOI: 10.1371/Journal.Pcbi.1002783  0.697
2012 Hyeon C, Lee J, Yoon J, Hohng S, Thirumalai D. Hidden complexity in the isomerization dynamics of Holliday junctions. Nature Chemistry. 4: 907-14. PMID 23089865 DOI: 10.1038/Nchem.1463  0.57
2012 Kim WK, Hyeon C, Sung W. Weak temporal signals can synchronize and accelerate the transition dynamics of biopolymers under tension. Proceedings of the National Academy of Sciences of the United States of America. 109: 14410-5. PMID 22908254 DOI: 10.1073/Pnas.1202952109  0.378
2012 Hyeon C, Thirumalai D. Multiple barriers in forced rupture of protein complexes. The Journal of Chemical Physics. 137: 055103. PMID 22894385 DOI: 10.1063/1.4739747  0.54
2012 Hyeon C, Thirumalai D. Chain length determines the folding rates of RNA. Biophysical Journal. 102: L11-3. PMID 22325296 DOI: 10.1016/J.Bpj.2012.01.003  0.549
2012 Hyeon C. Force-induced unbinding dynamics in a multidimensional free energy landscape Bulletin of the Korean Chemical Society. 33: 897-900. DOI: 10.5012/Bkcs.2012.33.3.897  0.327
2012 Lee H, Yoo J, Kyung T, Kim T, Hyeon C, Lim D, Heo WD, Yoon T. In Situ Quantitative Imaging of Single-Molecule Co-Immunoprecipitation Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.3269  0.307
2012 Jana B, Hyeon C, Onuchic JN. Exploring the Origin of Directionality of Ncd Motor using Structure-Based Model Biophysical Journal. 102: 371a. DOI: 10.1016/J.Bpj.2011.11.2028  0.687
2011 Hyeon C, Onuchic JN. A structural perspective on the dynamics of kinesin motors. Biophysical Journal. 101: 2749-59. PMID 22261064 DOI: 10.1016/J.Bpj.2011.10.037  0.541
2011 Lee Y, Jeong LS, Choi S, Hyeon C. Link between allosteric signal transduction and functional dynamics in a multisubunit enzyme: S-adenosylhomocysteine hydrolase. Journal of the American Chemical Society. 133: 19807-15. PMID 22023331 DOI: 10.1021/Ja2066175  0.329
2011 Hyeon C, Thirumalai D. Capturing the essence of folding and functions of biomolecules using coarse-grained models. Nature Communications. 2: 487. PMID 21952221 DOI: 10.1038/Ncomms1481  0.564
2011 Morrison G, Hyeon C, Hinczewski M, Thirumalai D. Compaction and tensile forces determine the accuracy of folding landscape parameters from single molecule pulling experiments. Physical Review Letters. 106: 138102. PMID 21517423 DOI: 10.1103/Physrevlett.106.138102  0.775
2010 Thirumalai D, O'Brien EP, Morrison G, Hyeon C. Theoretical perspectives on protein folding. Annual Review of Biophysics. 39: 159-83. PMID 20192765 DOI: 10.1146/Annurev-Biophys-051309-103835  0.678
2009 Priyakumar UD, Hyeon C, Thirumalai D, Mackerell AD. Urea destabilizes RNA by forming stacking interactions and multiple hydrogen bonds with nucleic acid bases. Journal of the American Chemical Society. 131: 17759-61. PMID 19919063 DOI: 10.1021/Ja905795V  0.563
2009 Hyeon C, Morrison G, Pincus DL, Thirumalai D. Refolding dynamics of stretched biopolymers upon force quench. Proceedings of the National Academy of Sciences of the United States of America. 106: 20288-93. PMID 19915145 DOI: 10.1073/Pnas.0905764106  0.671
2009 Moghaddam S, Caliskan G, Chauhan S, Hyeon C, Briber RM, Thirumalai D, Woodson SA. Metal ion dependence of cooperative collapse transitions in RNA. Journal of Molecular Biology. 393: 753-64. PMID 19712681 DOI: 10.1016/J.Jmb.2009.08.044  0.533
2009 Hyeon C, Klumpp S, Onuchic JN. Kinesin's backsteps under mechanical load. Physical Chemistry Chemical Physics : Pccp. 11: 4899-910. PMID 19506765 DOI: 10.1039/B903536B  0.505
2009 Hyeon C, Jennings PA, Adams JA, Onuchic JN. Ligand-induced global transitions in the catalytic domain of protein kinase A. Proceedings of the National Academy of Sciences of the United States of America. 106: 3023-8. PMID 19204278 DOI: 10.1073/Pnas.0813266106  0.532
2008 Pincus DL, Cho SS, Hyeon C, Thirumalai D. Minimal models for proteins and RNA from folding to function. Progress in Molecular Biology and Translational Science. 84: 203-50. PMID 19121703 DOI: 10.1016/S0079-6603(08)00406-6  0.681
2008 Hyeon C, Morrison G, Thirumalai D. Force-dependent hopping rates of RNA hairpins can be estimated from accurate measurement of the folding landscapes. Proceedings of the National Academy of Sciences of the United States of America. 105: 9604-9. PMID 18621721 DOI: 10.1073/Pnas.0802484105  0.666
2008 Pincus DL, Hyeon C, Thirumalai D. Effects of trimethylamine N-oxide (TMAO) and crowding agents on the stability of RNA hairpins. Journal of the American Chemical Society. 130: 7364-72. PMID 18479134 DOI: 10.1021/Ja078326W  0.546
2008 Toan NM, Morrison G, Hyeon C, Thirumalai D. Kinetics of loop formation in polymer chains. The Journal of Physical Chemistry. B. 112: 6094-106. PMID 18269274 DOI: 10.1021/Jp076510Y  0.647
2008 Hyeon C, Thirumalai D. Multiple probes are required to explore and control the rugged energy landscape of RNA hairpins. Journal of the American Chemical Society. 130: 1538-9. PMID 18186635 DOI: 10.1021/Ja0771641  0.569
2007 Mickler M, Dima RI, Dietz H, Hyeon C, Thirumalai D, Rief M. Revealing the bifurcation in the unfolding pathways of GFP by using single-molecule experiments and simulations. Proceedings of the National Academy of Sciences of the United States of America. 104: 20268-73. PMID 18079292 DOI: 10.1073/Pnas.0705458104  0.58
2007 Hyeon C, Onuchic JN. Mechanical control of the directional stepping dynamics of the kinesin motor. Proceedings of the National Academy of Sciences of the United States of America. 104: 17382-7. PMID 17959770 DOI: 10.1073/Pnas.0708828104  0.524
2007 Koculi E, Hyeon C, Thirumalai D, Woodson SA. Charge density of divalent metal cations determines RNA stability. Journal of the American Chemical Society. 129: 2676-82. PMID 17295487 DOI: 10.1021/Ja068027R  0.551
2007 Hyeon C, Onuchic JN. Internal strain regulates the nucleotide binding site of the kinesin leading head. Proceedings of the National Academy of Sciences of the United States of America. 104: 2175-80. PMID 17287347 DOI: 10.1073/Pnas.0610939104  0.492
2007 Hyeon C, Thirumalai D. Mechanical unfolding of RNA: From hairpins to structures with internal multiloops Biophysical Journal. 92: 731-743. PMID 17028142 DOI: 10.1529/Biophysj.106.093062  0.609
2007 Hyeon C, Thirumalai D. Measuring the energy landscape roughness and the transition state location of biomolecules using single molecule mechanical unfolding experiments Journal of Physics Condensed Matter. 19. DOI: 10.1088/0953-8984/19/11/113101  0.583
2007 Morrison G, Hyeon C, Toan NM, Ha BY, Thirumalai D. Stretching homopolymers Macromolecules. 40: 7343-7353. DOI: 10.1021/ma071117b  0.392
2006 Hyeon C, Lorimer GH, Thirumalai D. Dynamics of allosteric transitions in GroEL Proceedings of the National Academy of Sciences of the United States of America. 103: 18939-18944. PMID 17135353 DOI: 10.1073/Pnas.0608759103  0.506
2006 Hyeon C, Dima RI, Thirumalai D. Size, shape, and flexibility of RNA structures Journal of Chemical Physics. 125. PMID 17129165 DOI: 10.1063/1.2364190  0.575
2006 Hyeon C, Dima RI, Thirumalai D. Pathways and Kinetic Barriers in Mechanical Unfolding and Refolding of RNA and Proteins Structure. 14: 1633-1645. PMID 17098189 DOI: 10.1016/J.Str.2006.09.002  0.575
2006 Hyeon C, Thirumalai D. Kinetics of interior loop formation in semiflexible chains Journal of Chemical Physics. 124. PMID 16542102 DOI: 10.1063/1.2178805  0.548
2006 Hyeon C, Thirumalai D. Forced-unfolding and force-quench refolding of RNA hairpins Biophysical Journal. 90: 3410-3427. PMID 16473903 DOI: 10.1529/Biophysj.105.078030  0.597
2005 Caliskan G, Hyeon C, Perez-Salas U, Briber RM, Woodson SA, Thirumalai D. Persistence length changes dramatically as RNA folds. Physical Review Letters. 95: 268303. PMID 16486414 DOI: 10.1103/Physrevlett.95.268303  0.506
2005 Thirumalai D, Hyeon C. RNA and protein folding: Common themes and variations Biochemistry. 44: 4957-4970. PMID 15794634 DOI: 10.1021/Bi047314+  0.589
2005 Hyeon C, Thirumalai D. Mechanical unfolding of RNA hairpins Proceedings of the National Academy of Sciences of the United States of America. 102: 6789-6794. PMID 15749822 DOI: 10.1073/Pnas.0408314102  0.587
2005 Dima RI, Hyeon C, Thirumalai D. Extracting stacking interaction parameters for RNA from the data set of native structures Journal of Molecular Biology. 347: 53-69. PMID 15733917 DOI: 10.1016/J.Jmb.2004.12.012  0.553
2003 Hyeon C, Thirumalai D. Can energy landscape roughness of proteins and RNA be measured by using mechanical unfolding experiments? Proceedings of the National Academy of Sciences of the United States of America. 100: 10249-53. PMID 12934020 DOI: 10.1073/Pnas.1833310100  0.561
1997 Jung Y, Hyeon C, Shin S, Lee S. Effects of a quantum-mechanically driven two-state gating mode on the diffusion-influenced bimolecular reactions The Journal of Chemical Physics. 107: 9864-9877. DOI: 10.1063/1.475284  0.621
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