| Year |
Citation |
Score |
| 2023 |
Zhang S, Heil BJ, Mao W, Chikina M, Greene CS, Heller EA. MousiPLIER: A Mouse Pathway-Level Information Extractor Model. Biorxiv : the Preprint Server For Biology. PMID 37577575 DOI: 10.1101/2023.07.31.551386 |
0.523 |
|
| 2023 |
Mao W, Miller CM, Nair VD, Ge Y, Amper MAS, Cappuccio A, George MC, Goforth CW, Guevara K, Marjanovic N, Nudelman G, Pincas H, Ramos I, Sealfon RSG, Soares-Schanoski A, ... ... Chikina M, et al. A methylation clock model of mild SARS-CoV-2 infection provides insight into immune dysregulation. Molecular Systems Biology. e11361. PMID 36919946 DOI: 10.15252/msb.202211361 |
0.523 |
|
| 2022 |
Cappuccio A, Chawla DG, Chen X, Rubenstein AB, Cheng WS, Mao W, Burke TW, Tsalik EL, Petzold E, Henao R, McClain MT, Woods CW, Chikina M, Troyanskaya OG, Sealfon SC, et al. Multi-objective optimization identifies a specific and interpretable COVID-19 host response signature. Cell Systems. 13: 989-1001.e8. PMID 36549275 DOI: 10.1016/j.cels.2022.11.008 |
0.536 |
|
| 2022 |
Sauerwald N, Zhang Z, Ramos I, Nair VD, Soares-Schanoski A, Ge Y, Mao W, Alshammary H, Gonzalez-Reiche AS, van de Guchte A, Goforth CW, Lizewski RA, Lizewski SE, Amper MAS, Vasoya M, ... ... Chikina M, et al. Pre-infection antiviral innate immunity contributes to sex differences in SARS-CoV-2 infection. Cell Systems. PMID 36323307 DOI: 10.1016/j.cels.2022.10.005 |
0.613 |
|
| 2022 |
Crawford J, Christensen BC, Chikina M, Greene CS. Widespread redundancy in -omics profiles of cancer mutation states. Genome Biology. 23: 137. PMID 35761387 DOI: 10.1186/s13059-022-02705-y |
0.46 |
|
| 2020 |
Kowalczyk A, Partha R, Clark NL, Chikina M. Pan-mammalian analysis of molecular constraints underlying extended lifespan. Elife. 9. PMID 32043462 DOI: 10.7554/Elife.51089 |
0.305 |
|
| 2019 |
Raza Q, Choi JY, Li Y, O'Dowd RM, Watkins SC, Chikina M, Hong Y, Clark NL, Kwiatkowski AV. Evolutionary rate covariation analysis of E-cadherin identifies Raskol as a regulator of cell adhesion and actin dynamics in Drosophila. Plos Genetics. 15: e1007720. PMID 30763317 DOI: 10.1371/Journal.Pgen.1007720 |
0.302 |
|
| 2017 |
Zhang Q, Chikina M, Szymczak-Workman AL, Horne W, Kolls JK, Vignali KM, Normolle D, Bettini M, Workman CJ, Vignali DAA. LAG3 limits regulatory T cell proliferation and function in autoimmune diabetes. Science Immunology. 2. PMID 28783703 DOI: 10.1126/Sciimmunol.Aah4569 |
0.317 |
|
| 2016 |
Choi SG, Wang Q, Jia J, Chikina M, Pincas H, Dolios G, Sasaki K, Wang R, Minamino N, Salton SR, Sealfon SC. Characterization of gonadotrope secretoproteome identifies neurosecretory protein VGF-derived peptide suppression of follicle-stimulating hormone gene expression. The Journal of Biological Chemistry. PMID 27466366 DOI: 10.1074/Jbc.M116.740365 |
0.306 |
|
| 2016 |
Chikina M, Robinson JD, Clark NL. Hundreds of genes experienced convergent shifts in selective pressure in marine mammals. Molecular Biology and Evolution. PMID 27329977 DOI: 10.1093/Molbev/Msw112 |
0.314 |
|
| 2016 |
Weisel FJ, Zuccarino-Catania GV, Chikina M, Shlomchik MJ. A Temporal Switch in the Germinal Center Determines Differential Output of Memory B and Plasma Cells. Immunity. 44: 116-30. PMID 26795247 DOI: 10.1016/J.Immuni.2015.12.004 |
0.302 |
|
| 2015 |
Hartmann BM, Thakar J, Albrecht RA, Avey S, Zaslavsky E, Marjanovic N, Chikina M, Fribourg M, Hayot F, Schmolke M, Meng H, Wetmur J, García-Sastre A, Kleinstein SH, Sealfon SC. Human Dendritic Cell Response Signatures Distinguish 1918, Pandemic, and Seasonal H1N1 Influenza Viruses. Journal of Virology. 89: 10190-205. PMID 26223639 DOI: 10.1128/Jvi.01523-15 |
0.303 |
|
| 2015 |
Chikina MD, Gerald CP, Li X, Ge Y, Pincas H, Nair VD, Wong AK, Krishnan A, Troyanskaya OG, Raymond D, Saunders-Pullman R, Bressman SB, Yue Z, Sealfon SC. Low-variance RNAs identify Parkinson's disease molecular signature in blood. Movement Disorders : Official Journal of the Movement Disorder Society. 30: 813-21. PMID 25786808 DOI: 10.1002/Mds.26205 |
0.649 |
|
| 2012 |
Nair VD, Ge Y, Balasubramaniyan N, Kim J, Okawa Y, Chikina M, Troyanskaya O, Sealfon SC. Involvement of histone demethylase LSD1 in short-time-scale gene expression changes during cell cycle progression in embryonic stem cells. Molecular and Cellular Biology. 32: 4861-76. PMID 23028048 DOI: 10.1128/Mcb.00816-12 |
0.55 |
|
| 2012 |
Chikina MD, Troyanskaya OG. An effective statistical evaluation of ChIPseq dataset similarity. Bioinformatics (Oxford, England). 28: 607-13. PMID 22262674 DOI: 10.1093/Bioinformatics/Bts009 |
0.474 |
|
| 2011 |
Chikina MD, Troyanskaya OG. Accurate quantification of functional analogy among close homologs. Plos Computational Biology. 7: e1001074. PMID 21304936 DOI: 10.1371/Journal.Pcbi.1001074 |
0.507 |
|
| 2009 |
Chikina MD, Huttenhower C, Murphy CT, Troyanskaya OG. Global prediction of tissue-specific gene expression and context-dependent gene networks in Caenorhabditis elegans. Plos Computational Biology. 5: e1000417. PMID 19543383 DOI: 10.1371/Journal.Pcbi.1000417 |
0.585 |
|
| 2008 |
Huttenhower C, Schroeder M, Chikina MD, Troyanskaya OG. The Sleipnir library for computational functional genomics. Bioinformatics (Oxford, England). 24: 1559-61. PMID 18499696 DOI: 10.1093/Bioinformatics/Btn237 |
0.57 |
|
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