Youhna M. Ayala, Ph.D. - Publications

Affiliations: 
2001 Washington University, Saint Louis, St. Louis, MO 
Area:
Biochemistry

23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2011 Ayala YM, De Conti L, Avendaño-Vázquez SE, Dhir A, Romano M, D'Ambrogio A, Tollervey J, Ule J, Baralle M, Buratti E, Baralle FE. TDP-43 regulates its mRNA levels through a negative feedback loop. The Embo Journal. 30: 277-88. PMID 21131904 DOI: 10.1038/Emboj.2010.310  0.389
2009 D'Ambrogio A, Buratti E, Stuani C, Guarnaccia C, Romano M, Ayala YM, Baralle FE. Functional mapping of the interaction between TDP-43 and hnRNP A2 in vivo. Nucleic Acids Research. 37: 4116-26. PMID 19429692 DOI: 10.1093/Nar/Gkp342  0.403
2008 Ayala YM, Zago P, D'Ambrogio A, Xu YF, Petrucelli L, Buratti E, Baralle FE. Structural determinants of the cellular localization and shuttling of TDP-43. Journal of Cell Science. 121: 3778-85. PMID 18957508 DOI: 10.1242/Jcs.038950  0.384
2008 Ayala YM, Misteli T, Baralle FE. TDP-43 regulates retinoblastoma protein phosphorylation through the repression of cyclin-dependent kinase 6 expression. Proceedings of the National Academy of Sciences of the United States of America. 105: 3785-9. PMID 18305152 DOI: 10.1073/Pnas.0800546105  0.308
2006 Ayala YM, Pagani F, Baralle FE. TDP43 depletion rescues aberrant CFTR exon 9 skipping. Febs Letters. 580: 1339-44. PMID 16458894 DOI: 10.1016/J.Febslet.2006.01.052  0.382
2005 Mercado PA, Ayala YM, Romano M, Buratti E, Baralle FE. Depletion of TDP 43 overrides the need for exonic and intronic splicing enhancers in the human apoA-II gene. Nucleic Acids Research. 33: 6000-10. PMID 16254078 DOI: 10.1093/Nar/Gki897  0.373
2005 Buratti E, Brindisi A, Giombi M, Tisminetzky S, Ayala YM, Baralle FE. TDP-43 binds heterogeneous nuclear ribonucleoprotein A/B through its C-terminal tail: an important region for the inhibition of cystic fibrosis transmembrane conductance regulator exon 9 splicing. The Journal of Biological Chemistry. 280: 37572-84. PMID 16157593 DOI: 10.1074/Jbc.M505557200  0.44
2005 Ayala YM, Pantano S, D'Ambrogio A, Buratti E, Brindisi A, Marchetti C, Romano M, Baralle FE. Human, Drosophila, and C.elegans TDP43: nucleic acid binding properties and splicing regulatory function. Journal of Molecular Biology. 348: 575-88. PMID 15826655 DOI: 10.1016/J.Jmb.2005.02.038  0.463
2004 Buratti E, Baralle M, De Conti L, Baralle D, Romano M, Ayala YM, Baralle FE. hnRNP H binding at the 5' splice site correlates with the pathological effect of two intronic mutations in the NF-1 and TSHbeta genes. Nucleic Acids Research. 32: 4224-36. PMID 15299088 DOI: 10.1093/Nar/Gkh752  0.473
2002 Romano M, Marcucci R, Buratti E, Ayala YM, Sebastio G, Baralle FE. Regulation of 3' splice site selection in the 844ins68 polymorphism of the cystathionine Beta -synthase gene. The Journal of Biological Chemistry. 277: 43821-9. PMID 12228232 DOI: 10.1074/Jbc.M208107200  0.404
2001 Ayala YM, Cantwell AM, Rose T, Bush LA, Arosio D, Di Cera E. Molecular mapping of thrombin-receptor interactions. Proteins. 45: 107-16. PMID 11562940 DOI: 10.1002/Prot.1130  0.579
2001 Ayala YM, Arosio D, Di Cera E. Mutation of W215 compromises thrombin cleavage of fibrinogen, but not of PAR1 or protein C Annals of the New York Academy of Sciences. 936: 456-458. PMID 11460501 DOI: 10.1111/J.1749-6632.2001.Tb03530.X  0.623
2000 Ayala YM, Di Cera E. A simple method for the determination of individual rate constants for substrate hydrolysis by serine proteases Protein Science. 9: 1589-1593. PMID 10975580 DOI: 10.1110/Ps.9.8.1589  0.604
2000 Arosio D, Ayala YM, Di Cera E. Mutation of W215 compromises thrombin cleavage of fibrinogen, but not of PAR-1 or protein C Biochemistry. 39: 8095-8101. PMID 10891092 DOI: 10.1021/bi0006215  0.633
2000 Vindigni A, Winfield M, Ayala YM, Di Cera E. Role of residue Y99 in tissue plasminogen activator Protein Science. 9: 619-622. PMID 10752624 DOI: 10.1110/Ps.9.3.619  0.608
1997 Di Cera E, Dang QD, Ayala YM. Molecular mechanisms of thrombin function. Cellular and Molecular Life Sciences : Cmls. 53: 701-30. PMID 9368668 DOI: 10.1007/S000180050091  0.645
1997 Véscovi EG, Ayala YM, Cera ED, Groisman EA. Characterization of the bacterial sensor protein PhoQ: Evidence for distinct binding sites for Mg2+ and Ca2+ Journal of Biological Chemistry. 272: 1440-1443. PMID 8999810 DOI: 10.1074/Jbc.272.3.1440  0.359
1995 Di Cera E, Dang QD, Ayala Y, Vindigni A. Linkage at steady state: allosteric transitions of thrombin. Methods in Enzymology. 259: 127-44. PMID 8538450 DOI: 10.1016/0076-6879(95)59041-2  0.595
1995 Di Cera E, Guinto ER, Vindigni A, Dang QD, Ayala YM, Wuyi M, Tulinsky A. The Na+ binding site of thrombin. The Journal of Biological Chemistry. 270: 22089-92. PMID 7673182 DOI: 10.1074/Jbc.270.38.22089  0.656
1995 Guinto ER, Vindigni A, Ayala YM, Dang QD, Di Cera E. Identification of residues linked to the slow-->fast transition of thrombin. Proceedings of the National Academy of Sciences of the United States of America. 92: 11185-9. PMID 7479962 DOI: 10.1073/Pnas.92.24.11185  0.605
1995 Ayala YM, Vindigni A, Nayal M, Spolar RS, Record MT, Di Cera E. Thermodynamic investigation of hirudin binding to the slow and fast forms of thrombin: Evidence for folding transitions in the inhibitor and protease coupled to binding Journal of Molecular Biology. 253: 787-798. PMID 7473752 DOI: 10.1006/Jmbi.1995.0591  0.626
1994 Ayala Y, Di Cera E. Molecular recognition by thrombin. Role of the slow-->fast transition, site-specific ion binding energetics and thermodynamic mapping of structural components. Journal of Molecular Biology. 235: 733-46. PMID 8289292 DOI: 10.1006/Jmbi.1994.1024  0.657
1993 Hopfner KP, Ayala Y, Szewczuk Z, Konishi Y, Di Cera E. Chemical compensation in macromolecular bridge-binding to thrombin. Biochemistry. 32: 2947-53. PMID 8457559 DOI: 10.1021/Bi00063A004  0.637
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