| Year |
Citation |
Score |
| 2020 |
Hwang JY, Jung S, Kook TL, Rouchka EC, Bok J, Park JW. rMAPS2: an update of the RNA map analysis and plotting server for alternative splicing regulation. Nucleic Acids Research. PMID 32286627 DOI: 10.1093/Nar/Gkaa237 |
0.373 |
|
| 2019 |
Chaabane M, Williams RM, Stephens AT, Park JW. circDeep: Deep learning approach for circular RNA classification from other long non-coding RNA. Bioinformatics (Oxford, England). PMID 31268128 DOI: 10.1093/Bioinformatics/Btz537 |
0.353 |
|
| 2019 |
Harrison BJ, Park JW, Gomes C, Petruska JC, Sapio MR, Iadarola MJ, Chariker JH, Rouchka EC. Detection of Differentially Expressed Cleavage Site Intervals Within 3' Untranslated Regions Using CSI-UTR Reveals Regulated Interaction Motifs. Frontiers in Genetics. 10: 182. PMID 30915105 DOI: 10.3389/Fgene.2019.00182 |
0.398 |
|
| 2018 |
Teng Y, Ren Y, Sayed M, Hu X, Lei C, Kumar A, Hutchins E, Mu J, Deng Z, Luo C, Sundaram K, Sriwastva MK, Zhang L, Hsieh M, Reiman R, ... ... Park JW, et al. Plant-Derived Exosomal MicroRNAs Shape the Gut Microbiota. Cell Host & Microbe. 24: 637-652.e8. PMID 30449315 DOI: 10.1016/J.Chom.2018.10.001 |
0.308 |
|
| 2016 |
Zhou R, Park JW, Chun RF, Lisse TS, Garcia AJ, Zavala K, Sea JL, Lu ZX, Xu J, Xing Y, Adams JS, Hewison M. Concerted effects of heterogeneous nuclear ribonucleoprotein C1/C2 to control vitamin D-directed gene transcription and RNA splicing in human bone cells. Nucleic Acids Research. PMID 27672039 DOI: 10.1093/Nar/Gkw851 |
0.329 |
|
| 2016 |
Lin L, Park JW, Ramachandran S, Zhang Y, Tseng YT, Shen S, Waldvogel HJ, Curtis MA, Faull RL, Troncoso JC, Ross CA, Davidson BL, Xing Y. Transcriptome sequencing reveals aberrant alternative splicing in Huntington's disease. Human Molecular Genetics. PMID 27378699 DOI: 10.1093/Hmg/Ddw187 |
0.334 |
|
| 2016 |
Park JW, Jung S, Rouchka EC, Tseng YT, Xing Y. rMAPS: RNA map analysis and plotting server for alternative exon regulation. Nucleic Acids Research. PMID 27174931 DOI: 10.1093/Nar/Gkw410 |
0.39 |
|
| 2016 |
Cieply B, Park JW, Nakauka-Ddamba A, Bebee TW, Guo Y, Shang X, Lengner CJ, Xing Y, Carstens RP. Multiphasic and Dynamic Changes in Alternative Splicing during Induction of Pluripotency Are Coordinated by Numerous RNA-Binding Proteins. Cell Reports. PMID 27050523 DOI: 10.1016/J.Celrep.2016.03.025 |
0.389 |
|
| 2016 |
Yang Y, Park JW, Bebee TW, Warzecha CC, Guo Y, Shang X, Xing Y, Carstens RP. Determination of a comprehensive alternative splicing regulatory network and the combinatorial regulation by key factors during the epithelial to mesenchymal transition. Molecular and Cellular Biology. PMID 27044866 DOI: 10.1128/Mcb.00019-16 |
0.33 |
|
| 2016 |
Ji X, Park JW, Bahrami-Samani E, Lin L, Duncan-Lewis C, Pherribo G, Xing Y, Liebhaber SA. αCP binding to a cytosine-rich subset of polypyrimidine tracts drives a novel pathway of cassette exon splicing in the mammalian transcriptome. Nucleic Acids Research. PMID 26896798 DOI: 10.1093/Nar/Gkw088 |
0.344 |
|
| 2016 |
Lin L, Jiang P, Park JW, Wang J, Lu ZX, Lam MP, Ping P, Xing Y. The contribution of Alu exons to the human proteome. Genome Biology. 17: 15. PMID 26821878 DOI: 10.1186/S13059-016-0876-5 |
0.302 |
|
| 2015 |
Stein S, Lu ZX, Bahrami-Samani E, Park JW, Xing Y. Discover hidden splicing variations by mapping personal transcriptomes to personal genomes. Nucleic Acids Research. PMID 26578562 DOI: 10.1093/Nar/Gkv1099 |
0.362 |
|
| 2015 |
Bebee TW, Park JW, Sheridan KI, Warzecha CC, Cieply BW, Rohacek AM, Xing Y, Carstens RP. The splicing regulators Esrp1 and Esrp2 direct an epithelial splicing program essential for mammalian development. Elife. 4. PMID 26371508 DOI: 10.7554/Elife.08954 |
0.319 |
|
| 2015 |
Lu ZX, Huang Q, Park JW, Shen S, Lin L, Tokheim CJ, Henry MD, Xing Y. Transcriptome-wide landscape of pre-mRNA alternative splicing associated with metastatic colonization. Molecular Cancer Research : McR. 13: 305-18. PMID 25274489 DOI: 10.1158/1541-7786.Mcr-14-0366 |
0.339 |
|
| 2014 |
Shen S, Park JW, Lu ZX, Lin L, Henry MD, Wu YN, Zhou Q, Xing Y. rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data. Proceedings of the National Academy of Sciences of the United States of America. 111: E5593-601. PMID 25480548 DOI: 10.1073/Pnas.1419161111 |
0.377 |
|
| 2014 |
Guo R, Zheng L, Park JW, Lv R, Chen H, Jiao F, Xu W, Mu S, Wen H, Qiu J, Wang Z, Yang P, Wu F, Hui J, Fu X, et al. BS69/ZMYND11 reads and connects histone H3.3 lysine 36 trimethylation-decorated chromatin to regulated pre-mRNA processing. Molecular Cell. 56: 298-310. PMID 25263594 DOI: 10.1016/J.Molcel.2014.08.022 |
0.341 |
|
| 2014 |
Tokheim C, Park JW, Xing Y. PrimerSeq: Design and visualization of RT-PCR primers for alternative splicing using RNA-seq data. Genomics, Proteomics & Bioinformatics. 12: 105-9. PMID 24747190 DOI: 10.1016/J.Gpb.2014.04.001 |
0.372 |
|
| 2013 |
Zhao K, Lu ZX, Park JW, Zhou Q, Xing Y. GLiMMPS: robust statistical model for regulatory variation of alternative splicing using RNA-seq data. Genome Biology. 14: R74. PMID 23876401 DOI: 10.1186/Gb-2013-14-7-R74 |
0.36 |
|
| 2013 |
Park JW, Tokheim C, Shen S, Xing Y. Identifying differential alternative splicing events from RNA sequencing data using RNASeq-MATS. Methods in Molecular Biology (Clifton, N.J.). 1038: 171-9. PMID 23872975 DOI: 10.1007/978-1-62703-514-9_10 |
0.389 |
|
| 2012 |
Dittmar KA, Jiang P, Park JW, Amirikian K, Wan J, Shen S, Xing Y, Carstens RP. Genome-wide determination of a broad ESRP-regulated posttranscriptional network by high-throughput sequencing. Molecular and Cellular Biology. 32: 1468-82. PMID 22354987 DOI: 10.1128/Mcb.06536-11 |
0.401 |
|
| 2012 |
Shen S, Park JW, Huang J, Dittmar KA, Lu ZX, Zhou Q, Carstens RP, Xing Y. MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data. Nucleic Acids Research. 40: e61. PMID 22266656 DOI: 10.1093/Nar/Gkr1291 |
0.382 |
|
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