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Buck S. Samuel, Ph.D. - Publications

Affiliations: 
2015- Center for Metagenomics and Microbiome Research Baylor College of Medicine, Houston, TX 
Area:
Microbiome, C. elegans, Systems Biology, Genetics and Genomics, Host-Microbe Interactions
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22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Zhang F, Blackburn D, Hosea CN, Assié A, Samuel BS. Application of Flow Vermimetry for Quantification and Analysis of the Caenorhabditis elegans Gut Microbiome. Journal of Visualized Experiments : Jove. PMID 37067276 DOI: 10.3791/64605  0.794
2023 Marinos G, Hamerich IK, Debray R, Obeng N, Petersen C, Taubenheim J, Zimmermann J, Blackburn D, Samuel BS, Dierking K, Franke A, Laudes M, Waschina S, Schulenburg H, Kaleta C. Metabolic model predictions enable targeted microbiome manipulation through precision prebiotics. Biorxiv : the Preprint Server For Biology. PMID 36824941 DOI: 10.1101/2023.02.17.528811  0.315
2022 Hill AA, Kim M, Zegarra-Ruiz DF, Chang LC, Norwood KC, Assié A, Wu WH, Renfroe MC, Song HW, Major AM, Samuel BS, Hyser JM, Longman RS, Diehl GE. Acute high fat diet impairs macrophage supported intestinal damage resolution. Jci Insight. PMID 36538527 DOI: 10.1172/jci.insight.164489  0.741
2022 Wu WH, Kim M, Chang LC, Assie A, Saldana-Morales FB, Zegarra-Ruiz DF, Norwood K, Samuel BS, Diehl GE. Interleukin-1β secretion induced by mucosa-associated gut commensal bacteria promotes intestinal barrier repair. Gut Microbes. 14: 2014772. PMID 34989321 DOI: 10.1080/19490976.2021.2014772  0.744
2021 Schiffer JA, Stumbur SV, Seyedolmohadesin M, Xu Y, Serkin WT, McGowan NG, Banjo O, Torkashvand M, Lin A, Hosea CN, Assié A, Samuel BS, O'Donnell MP, Venkatachalam V, Apfeld J. Modulation of sensory perception by hydrogen peroxide enables Caenorhabditis elegans to find a niche that provides both food and protection from hydrogen peroxide. Plos Pathogens. 17: e1010112. PMID 34941962 DOI: 10.1371/journal.ppat.1010112  0.75
2021 Chavez IN, Brown TM, Assié A, Bryant AS, Samuel BS, Hallem EA. Skin-penetrating nematodes exhibit life-stage-specific interactions with host-associated and environmental bacteria. Bmc Biology. 19: 221. PMID 34620172 DOI: 10.1186/s12915-021-01153-7  0.783
2021 Zhang F, Weckhorst JL, Assié A, Hosea C, Ayoub CA, Khodakova AS, Cabrera ML, Vidal Vilchis D, Félix MA, Samuel BS. Natural genetic variation drives microbiome selection in the Caenorhabditis elegans gut. Current Biology : Cb. PMID 34048707 DOI: 10.1016/j.cub.2021.04.046  0.637
2021 Khodakova AS, Vilchis DV, Blackburn D, Amanor F, Samuel BS. Population scale nucleic acid delivery to Caenorhabditis elegans via electroporation. G3 (Bethesda, Md.). PMID 33872353 DOI: 10.1093/g3journal/jkab123  0.758
2020 Dirksen P, Assié A, Zimmermann J, Zhang F, Tietje AM, Marsh SA, Félix MA, Shapira M, Kaleta C, Schulenburg H, Samuel BS. CeMbio - The Microbiome Resource. G3 (Bethesda, Md.). PMID 32669368 DOI: 10.1534/G3.120.401309  0.801
2020 Zhang F, Weckhorst JL, Assié A, Khodakova AS, Loeza-Cabrera M, Vidal D, Samuel BS. High-Throughput Assessment of Changes in the Caenorhabditis elegans Gut Microbiome. Methods in Molecular Biology (Clifton, N.J.). 2144: 131-144. PMID 32410031 DOI: 10.1007/978-1-0716-0592-9_12  0.706
2019 Assié A, Samuel BS. The Devil Is in the Microbial Genetic Details. Molecular Cell. 74: 1108-1109. PMID 31226275 DOI: 10.1016/J.Molcel.2019.06.003  0.775
2017 Bodine TJ, Evangelista MA, Chang HT, Ayoub CA, Samuel BS, Sucgang R, Zechiedrich L. Escherichia coli DNA ligase B may mitigate damage from oxidative stress. Plos One. 12: e0180800. PMID 28700629 DOI: 10.1371/Journal.Pone.0180800  0.726
2017 Zhang F, Berg M, Dierking K, Félix MA, Shapira M, Samuel BS, Schulenburg H. Caenorhabditis elegans as a Model for Microbiome Research. Frontiers in Microbiology. 8: 485. PMID 28386252 DOI: 10.3389/Fmicb.2017.00485  0.5
2016 Gregory KE, Samuel BS, Houghteling P, Shan G, Ausubel FM, Sadreyev RI, Walker WA. Influence of maternal breast milk ingestion on acquisition of the intestinal microbiome in preterm infants. Microbiome. 4: 68. PMID 28034306 DOI: 10.1186/S40168-016-0214-X  0.701
2016 Samuel BS, Rowedder H, Braendle C, Félix MA, Ruvkun G. Caenorhabditis elegans responses to bacteria from its natural habitats. Proceedings of the National Academy of Sciences of the United States of America. PMID 27317746 DOI: 10.1073/Pnas.1607183113  0.644
2015 Haney CH, Samuel BS, Bush J, Ausubel FM. Associations with rhizosphere bacteria can confer an adaptive advantage to plants. Nature Plants. 1. PMID 27019743 DOI: 10.1038/Nplants.2015.51  0.793
2014 Liu Y, Samuel BS, Breen PC, Ruvkun G. Caenorhabditis elegans pathways that surveil and defend mitochondria. Nature. 508: 406-10. PMID 24695221 DOI: 10.1038/Nature13204  0.545
2008 Samuel BS, Shaito A, Motoike T, Rey FE, Backhed F, Manchester JK, Hammer RE, Williams SC, Crowley J, Yanagisawa M, Gordon JI. Effects of the gut microbiota on host adiposity are modulated by the short-chain fatty-acid binding G protein-coupled receptor, Gpr41. Proceedings of the National Academy of Sciences of the United States of America. 105: 16767-72. PMID 18931303 DOI: 10.1073/Pnas.0808567105  0.542
2007 Samuel BS, Hansen EE, Manchester JK, Coutinho PM, Henrissat B, Fulton R, Latreille P, Kim K, Wilson RK, Gordon JI. Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut Proceedings of the National Academy of Sciences of the United States of America. 104: 10643-10648. PMID 17563350 DOI: 10.1073/Pnas.0704189104  0.559
2006 Samuel BS, Gordon JI. A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism. Proceedings of the National Academy of Sciences of the United States of America. 103: 10011-6. PMID 16782812 DOI: 10.1073/Pnas.0602187103  0.529
2006 Gill SR, Pop M, Deboy RT, Eckburg PB, Turnbaugh PJ, Samuel BS, Gordon JI, Relman DA, Fraser-Liggett CM, Nelson KE. Metagenomic analysis of the human distal gut microbiome. Science (New York, N.Y.). 312: 1355-9. PMID 16741115 DOI: 10.1126/Science.1124234  0.656
2004 Rawls JF, Samuel BS, Gordon JI. Gnotobiotic zebrafish reveal evolutionarily conserved responses to the gut microbiota. Proceedings of the National Academy of Sciences of the United States of America. 101: 4596-601. PMID 15070763 DOI: 10.1073/Pnas.0400706101  0.612
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