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Jeremy Freeman, Ph.D. - Publications

2016 Center for Neural Science HHMI Janelia Farm Research Campus, Ashburn, VA, United States 
 2017- computational biology Chan Zuckerberg Initiative 

26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Vladimirov N, Wang C, Höckendorf B, Pujala A, Tanimoto M, Mu Y, Yang CT, Wittenbach JD, Freeman J, Preibisch S, Koyama M, Keller PJ, Ahrens MB. Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function. Nature Methods. 15: 1117-1125. PMID 30504888 DOI: 10.1038/s41592-018-0221-x  1
2018 Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P, Gerhard S, Friedrich RW, Friedrich J, Paninski L, Pachitariu M, et al. Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. Plos Computational Biology. 14: e1006157. PMID 29782491 DOI: 10.1371/journal.pcbi.1006157  1
2018 Ziemba CM, Freeman J, Simoncelli EP, Movshon JA. Contextual modulation of sensitivity to naturalistic image structure in macaque V2. Journal of Neurophysiology. PMID 29641304 DOI: 10.1152/jn.00900.2017  1
2016 Harris KD, Quiroga RQ, Freeman J, Smith SL. Improving data quality in neuronal population recordings. Nature Neuroscience. 19: 1165-1174. PMID 27571195 DOI: 10.1038/nn.4365  1
2016 Ji N, Freeman J, Smith SL. Technologies for imaging neural activity in large volumes. Nature Neuroscience. 19: 1154-1164. PMID 27571194 DOI: 10.1038/nn.4358  1
2016 Ziemba CM, Freeman J, Movshon JA, Simoncelli EP. Selectivity and tolerance for visual texture in macaque V2. Proceedings of the National Academy of Sciences of the United States of America. PMID 27173899 DOI: 10.1073/pnas.1510847113  1
2016 Dunn TW, Mu Y, Narayan S, Randlett O, Naumann EA, Yang CT, Schier AF, Freeman J, Engert F, Ahrens MB. Brain-wide mapping of neural activity controlling zebrafish exploratory locomotion. Elife. 5. PMID 27003593 DOI: 10.7554/eLife.12741  1
2015 Sofroniew NJ, Vlasov YA, Andrew Hires S, Freeman J, Svoboda K. Neural coding in barrel cortex during whisker-guided locomotion. Elife. 4. PMID 26701910 DOI: 10.7554/eLife.12559  1
2015 Freeman J, Field GD, Li PH, Greschner M, Gunning DE, Mathieson K, Sher A, Litke AM, Paninski L, Simoncelli EP, Chichilnisky EJ. Mapping nonlinear receptive field structure in primate retina at single cone resolution. Elife. 4. PMID 26517879 DOI: 10.7554/eLife.05241  1
2015 Freeman J. Open source tools for large-scale neuroscience. Current Opinion in Neurobiology. 32: 156-163. PMID 25982977 DOI: 10.1016/j.conb.2015.04.002  1
2015 Ziemba CM, Freeman J. Representing "stuff" in visual cortex. Proceedings of the National Academy of Sciences of the United States of America. 112: 942-3. PMID 25587133 DOI: 10.1073/pnas.1423496112  1
2015 Keller PJ, Ahrens MB, Freeman J. Light-sheet imaging for systems neuroscience. Nature Methods. 12: 27-9. PMID 25549267 DOI: 10.1038/nmeth.3214  1
2015 Lemon WC, Pulver SR, Höckendorf B, McDole K, Branson K, Freeman J, Keller PJ. Whole-central nervous system functional imaging in larval Drosophila Nature Communications. 6. DOI: 10.1038/ncomms8924  1
2014 Wang HX, Merriam EP, Freeman J, Heeger DJ. Motion direction biases and decoding in human visual cortex. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 12601-15. PMID 25209297 DOI: 10.1523/JNEUROSCI.1034-14.2014  1
2014 Freeman J, Vladimirov N, Kawashima T, Mu Y, Sofroniew NJ, Bennett DV, Rosen J, Yang CT, Looger LL, Ahrens MB. Mapping brain activity at scale with cluster computing. Nature Methods. 11: 941-50. PMID 25068736 DOI: 10.1038/nmeth.3041  1
2014 Vladimirov N, Mu Y, Kawashima T, Bennett DV, Yang CT, Looger LL, Keller PJ, Freeman J, Ahrens MB. Light-sheet functional imaging in fictively behaving zebrafish. Nature Methods. 11: 883-4. PMID 25068735 DOI: 10.1038/nmeth.3040  1
2013 Freeman J, Heeger DJ, Merriam EP. Coarse-scale biases for spirals and orientation in human visual cortex. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 19695-703. PMID 24336733 DOI: 10.1523/JNEUROSCI.0889-13.2013  1
2013 Freeman J, Ziemba CM, Heeger DJ, Simoncelli EP, Movshon JA. A functional and perceptual signature of the second visual area in primates. Nature Neuroscience. 16: 974-81. PMID 23685719 DOI: 10.1038/nn.3402  1
2012 Wang HX, Freeman J, Merriam EP, Hasson U, Heeger DJ. Temporal eye movement strategies during naturalistic viewing. Journal of Vision. 12: 16. PMID 22262911 DOI: 10.1167/12.1.16  1
2012 Freeman J, Chakravarthi R, Pelli DG. Substitution and pooling in crowding. Attention, Perception & Psychophysics. 74: 379-96. PMID 22160819 DOI: 10.3758/s13414-011-0229-0  1
2011 Freeman J, Simoncelli EP. Metamers of the ventral stream. Nature Neuroscience. 14: 1195-201. PMID 21841776 DOI: 10.1038/nn.2889  1
2011 Freeman J, Donner TH, Heeger DJ. Inter-area correlations in the ventral visual pathway reflect feature integration. Journal of Vision. 11. PMID 21521832 DOI: 10.1167/11.4.15  1
2011 Freeman J, Brouwer GJ, Heeger DJ, Merriam EP. Orientation decoding depends on maps, not columns. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 4792-804. PMID 21451017 DOI: 10.1523/JNEUROSCI.5160-10.2011  1
2011 Freeman J, Ziemba CM. Unwrapping the ventral stream. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 2349-51. PMID 21325501 DOI: 10.1523/JNEUROSCI.6191-10.2011  1
2007 Freeman J, Pelli DG. An escape from crowding. Journal of Vision. 7: 22.1-14. PMID 18217837 DOI: 10.1167/7.2.22  1
2007 Pelli DG, Tillman KA, Freeman J, Su M, Berger TD, Majaj NJ. Crowding and eccentricity determine reading rate. Journal of Vision. 7: 20.1-36. PMID 18217835 DOI: 10.1167/7.2.20  1
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