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Matthew G. Seetin, Ph.D. - Publications

Affiliations: 
2011 School of Medicine and Dentistry University of Rochester, Rochester, NY 
Area:
General Biophysics, Genetics
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7 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Spasic A, Berger KD, Chen JL, Seetin MG, Turner DH, Mathews DH. Improving RNA nearest neighbor parameters for helices by going beyond the two-state model. Nucleic Acids Research. PMID 29718397 DOI: 10.1093/Nar/Gky270  0.62
2014 Aytenfisu AH, Spasic A, Seetin MG, Serafini J, Mathews DH. Modified Amber Force Field Correctly Models the Conformational Preference for Tandem GA pairs in RNA. Journal of Chemical Theory and Computation. 10: 1292-1301. PMID 24803859 DOI: 10.1021/Ct400861G  0.587
2014 Seetin MG, Kladwang W, Bida JP, Das R. Massively parallel RNA chemical mapping with a reduced bias MAP-seq protocol. Methods in Molecular Biology (Clifton, N.J.). 1086: 95-117. PMID 24136600 DOI: 10.1007/978-1-62703-667-2_6  0.369
2013 Bellaousov S, Reuter JS, Seetin MG, Mathews DH. RNAstructure: Web servers for RNA secondary structure prediction and analysis. Nucleic Acids Research. 41: W471-4. PMID 23620284 DOI: 10.1093/Nar/Gkt290  0.695
2012 Seetin MG, Mathews DH. RNA structure prediction: an overview of methods. Methods in Molecular Biology (Clifton, N.J.). 905: 99-122. PMID 22736001 DOI: 10.1007/978-1-61779-949-5_8  0.703
2012 Seetin MG, Mathews DH. TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknots. Bioinformatics (Oxford, England). 28: 792-8. PMID 22285566 DOI: 10.1093/Bioinformatics/Bts044  0.679
2011 Seetin MG, Mathews DH. Automated RNA tertiary structure prediction from secondary structure and low-resolution restraints. Journal of Computational Chemistry. 32: 2232-44. PMID 21509787 DOI: 10.1002/Jcc.21806  0.693
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