| Year |
Citation |
Score |
| 2023 |
Kim BY, Gellert HR, Church SH, Suvorov A, Anderson SS, Barmina O, Beskid SG, Comeault AA, Nicole Crown K, Diamond SE, Dorus S, Fujichika T, Hemker JA, Hrcek J, Kankare M, ... ... Petrov DA, et al. Single-fly assemblies fill major phylogenomic gaps across the Drosophilidae Tree of Life. Biorxiv : the Preprint Server For Biology. PMID 37873137 DOI: 10.1101/2023.10.02.560517 |
0.322 |
|
| 2023 |
Blair LM, Juan JM, Sebastian L, Tran VB, Nie W, Wall GD, Gerceker M, Lai IK, Apilado EA, Grenot G, Amar D, Foggetti G, Do Carmo M, Ugur Z, Deng D, ... ... Petrov DA, et al. Oncogenic context shapes the fitness landscape of tumor suppression. Nature Communications. 14: 6422. PMID 37828026 DOI: 10.1038/s41467-023-42156-y |
0.588 |
|
| 2023 |
Yousefi M, Andrejka L, Szamecz M, Winslow MM, Petrov DA, Boross G. Fully accessible fitness landscape of oncogene-negative lung adenocarcinoma. Proceedings of the National Academy of Sciences of the United States of America. 120: e2303224120. PMID 37695905 DOI: 10.1073/pnas.2303224120 |
0.625 |
|
| 2023 |
Zhu X, Zhou B, Pattni R, Gleason K, Tan C, Kalinowski A, Sloan S, Fiston-Lavier AS, Mariani J, Petrov D, Barres BA, Duncan L, Abyzov A, Vogel H, Moran JV, et al. Author Correction: Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia. Nature Neuroscience. PMID 37648813 DOI: 10.1038/s41593-023-01438-w |
0.674 |
|
| 2023 |
Kinsler G, Schmidlin K, Newell D, Eder R, Apodaca S, Lam G, Petrov D, Geiler-Samerotte K. Extreme Sensitivity of Fitness to Environmental Conditions: Lessons from #1BigBatch. Journal of Molecular Evolution. PMID 37237236 DOI: 10.1007/s00239-023-10114-3 |
0.78 |
|
| 2023 |
Yousefi M, Andrejka L, Winslow MM, Petrov DA, Boross G. Fully accessible fitness landscape of oncogene-negative lung adenocarcinoma. Biorxiv : the Preprint Server For Biology. PMID 36778226 DOI: 10.1101/2023.01.30.526178 |
0.626 |
|
| 2023 |
Lee MC, Cai H, Murray CW, Li C, Shue YT, Andrejka L, He AL, Holzem AME, Drainas AP, Ko JH, Coles GL, Kong C, Zhu S, Zhu C, Wang J, ... ... Petrov DA, et al. A multiplexed in vivo approach to identify driver genes in small cell lung cancer. Cell Reports. 42: 111990. PMID 36640300 DOI: 10.1016/j.celrep.2023.111990 |
0.67 |
|
| 2023 |
Tang R, Shuldiner EG, Kelly M, Murray CW, Hebert JD, Andrejka L, Tsai MK, Hughes NW, Parker MI, Cai H, Li YC, Wahl GM, Dunbrack RL, Jackson PK, Petrov DA, et al. Multiplexed screens identify RAS paralogues HRAS and NRAS as suppressors of KRAS-driven lung cancer growth. Nature Cell Biology. PMID 36635501 DOI: 10.1038/s41556-022-01049-w |
0.566 |
|
| 2022 |
Armstrong EE, Campana MG, Solari KA, Morgan SR, Ryder OA, Naude VN, Samelius G, Sharma K, Hadly EA, Petrov DA. Genome Report: Chromosome-level draft assemblies of the snow leopard, African leopard, and tiger (Panthera uncia, Panthera pardus pardus, and Panthera tigris). G3 (Bethesda, Md.). PMID 36250809 DOI: 10.1093/g3journal/jkac277 |
0.803 |
|
| 2022 |
Tilk S, Tkachenko S, Curtis C, Petrov DA, McFarland CD. Most cancers carry a substantial deleterious load due to Hill-Robertson interference. Elife. 11. PMID 36047771 DOI: 10.7554/eLife.67790 |
0.765 |
|
| 2022 |
Yousefi M, Boross G, Weiss C, Murray CW, Hebert JD, Cai H, Ashkin EL, Karmakar S, Andrejka L, Chen L, Wang M, Tsai MK, Lin WY, Li C, Yakhchalian P, ... ... Petrov DA, et al. Combinatorial Inactivation of Tumor Suppressors Efficiently Initiates Lung Adenocarcinoma with Therapeutic Vulnerabilities. Cancer Research. 82: 1589-1602. PMID 35425962 DOI: 10.1158/0008-5472.CAN-22-0059 |
0.638 |
|
| 2022 |
Kim BY, Wang JR, Miller DE, Barmina O, Delaney E, Thompson A, Comeault AA, Peede D, D'Agostino ERR, Pelaez J, Aguilar JM, Haji D, Matsunaga T, Armstrong E, Zych M, ... ... Petrov DA, et al. Correction: Highly contiguous assemblies of 101 drosophilid genomes. Elife. 11. PMID 35302486 DOI: 10.7554/eLife.78579 |
0.74 |
|
| 2022 |
Rudman SM, Greenblum SI, Rajpurohit S, Betancourt NJ, Hanna J, Tilk S, Yokoyama T, Petrov DA, Schmidt P. Direct observation of adaptive tracking on ecological time scales in . Science (New York, N.Y.). 375: eabj7484. PMID 35298245 DOI: 10.1126/science.abj7484 |
0.818 |
|
| 2022 |
Foggetti G, Li C, Cai H, Petrov DA, Winslow MM, Politi K. Tumor suppressor pathways shape EGFR-driven lung tumor progression and response to treatment. Molecular & Cellular Oncology. 9: 1994328. PMID 35252550 DOI: 10.1080/23723556.2021.1994328 |
0.643 |
|
| 2021 |
Cerca J, Armstrong EE, Vizueta J, Fernández R, Dimitrov D, Petersen B, Prost S, Rozas J, Petrov D, Gillespie RG. The Tetragnatha kauaiensis genome sheds light on the origins of genomic novelty in spiders. Genome Biology and Evolution. PMID 34849853 DOI: 10.1093/gbe/evab262 |
0.816 |
|
| 2021 |
Suvorov A, Kim BY, Wang J, Armstrong EE, Peede D, D'Agostino ERR, Price DK, Waddell P, Lang M, Courtier-Orgogozo V, David JR, Petrov D, Matute DR, Schrider DR, Comeault AA. Widespread introgression across a phylogeny of 155 Drosophila genomes. Current Biology : Cb. PMID 34788634 DOI: 10.1016/j.cub.2021.10.052 |
0.762 |
|
| 2021 |
Kapun M, Nunez JCB, Bogaerts-Márquez M, Murga-Moreno J, Paris M, Outten J, Coronado-Zamora M, Tern C, Rota-Stabelli O, García Guerreiro MP, Casillas S, Orengo DJ, Puerma E, Kankare M, Ometto L, ... ... Petrov D, et al. Drosophila Evolution over Space and Time (DEST) - A New Population Genomics Resource. Molecular Biology and Evolution. PMID 34469576 DOI: 10.1093/molbev/msab259 |
0.829 |
|
| 2021 |
Kim BY, Wang J, Miller DE, Barmina O, Delaney EK, Thompson A, Comeault AA, Peede D, D'Agostino ER, Pelaez J, Aguilar JM, Haji D, Matsunaga T, Armstrong E, Zych M, ... ... Petrov DA, et al. Highly contiguous assemblies of 101 drosophilid genomes. Elife. 10. PMID 34279216 DOI: 10.7554/eLife.66405 |
0.748 |
|
| 2021 |
Li C, Lin WY, Rizvi H, Cai H, McFarland CD, Rogers ZN, Yousefi M, Winters IP, Rudin CM, Petrov DA, Winslow MM. Quantitative in vivo analyses reveal a complex pharmacogenomic landscape in lung adenocarcinoma. Cancer Research. PMID 34215621 DOI: 10.1158/0008-5472.CAN-21-0716 |
0.772 |
|
| 2021 |
Machado HE, Bergland A, Taylor RW, Tilk S, Behrman E, Dyer K, Fabian DK, Flatt T, González J, Karasov TL, Kim BY, Kozeretska I, Lazzaro BP, Merritt T, Pool JE, ... ... Petrov DA, et al. Broad geographic sampling reveals the shared basis and environmental correlates of seasonal adaptation in Drosophila. Elife. 10. PMID 34155971 DOI: 10.7554/eLife.67577 |
0.814 |
|
| 2021 |
Bergelson J, Kreitman M, Petrov DA, Sanchez A, Tikhonov M. Functional biology in its natural context: A search for emergent simplicity. Elife. 10. PMID 34096867 DOI: 10.7554/eLife.67646 |
0.522 |
|
| 2021 |
Weiss CV, Harshman L, Inoue F, Fraser HB, Petrov DA, Ahituv N, Gokhman D. The -regulatory effects of modern human-specific variants. Elife. 10. PMID 33885362 DOI: 10.7554/eLife.63713 |
0.798 |
|
| 2021 |
Chaikovsky AC, Li C, Jeng EE, Loebell S, Lee MC, Murray CW, Cheng R, Demeter J, Swaney DL, Chen SH, Newton BW, Johnson JR, Drainas AP, Shue YT, Seoane JA, ... ... Petrov DA, et al. The AMBRA1 E3 ligase adaptor regulates the stability of cyclin D. Nature. PMID 33854239 DOI: 10.1038/s41586-021-03474-7 |
0.613 |
|
| 2021 |
Gokhman D, Agoglia RM, Kinnebrew M, Gordon W, Sun D, Bajpai VK, Naqvi S, Chen C, Chan A, Chen C, Petrov DA, Ahituv N, Zhang H, Mishina Y, Wysocka J, et al. Publisher Correction: Human-chimpanzee fused cells reveal cis-regulatory divergence underlying skeletal evolution. Nature Genetics. PMID 33762754 DOI: 10.1038/s41588-021-00849-4 |
0.769 |
|
| 2021 |
Gokhman D, Agoglia RM, Kinnebrew M, Gordon W, Sun D, Bajpai VK, Naqvi S, Chen C, Chan A, Chen C, Petrov DA, Ahituv N, Zhang H, Mishina Y, Wysocka J, et al. Human-chimpanzee fused cells reveal cis-regulatory divergence underlying skeletal evolution. Nature Genetics. PMID 33731941 DOI: 10.1038/s41588-021-00804-3 |
0.782 |
|
| 2021 |
Foggetti G, Li C, Cai H, Hellyer JA, Lin WY, Ayeni D, Hastings K, Choi J, Wurtz A, Andrejka L, Maghini DG, Rashleigh N, Levy S, Homer R, Gettinger SN, ... ... Petrov DA, et al. Genetic determinants of EGFR-Driven Lung Cancer Growth and Therapeutic Response In Vivo. Cancer Discovery. PMID 33707235 DOI: 10.1158/2159-8290.CD-20-1385 |
0.635 |
|
| 2021 |
Garud NR, Messer PW, Petrov DA. Detection of hard and soft selective sweeps from Drosophila melanogaster population genomic data. Plos Genetics. 17: e1009373. PMID 33635910 DOI: 10.1371/journal.pgen.1009373 |
0.739 |
|
| 2021 |
Cai H, Chew SK, Li C, Tsai MK, Andrejka L, Murray CW, Hughes NW, Shuldiner EG, Ashkin EL, Tang R, Hung KL, Chen LC, Lee SYC, Yousefi M, Lin WY, ... ... Petrov DA, et al. A functional taxonomy of tumor suppression in oncogenic KRAS-driven lung cancer. Cancer Discovery. PMID 33608386 DOI: 10.1158/2159-8290.CD-20-1325 |
0.786 |
|
| 2021 |
Armstrong EE, Khan A, Taylor RW, Gouy A, Greenbaum G, Thiéry A, Kang JTL, Redondo SA, Prost S, Barsh G, Kaelin C, Phalke S, Chugani A, Gilbert M, Miquelle D, ... ... Petrov D, et al. Recent evolutionary history of tigers highlights contrasting roles of genetic drift and selection. Molecular Biology and Evolution. PMID 33592092 DOI: 10.1093/molbev/msab032 |
0.828 |
|
| 2021 |
Zhu X, Zhou B, Pattni R, Gleason K, Tan C, Kalinowski A, Sloan S, Fiston-Lavier AS, Mariani J, Petrov D, Barres BA, Duncan L, Abyzov A, Vogel H, et al. Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia. Nature Neuroscience. PMID 33432196 DOI: 10.1038/s41593-020-00767-4 |
0.719 |
|
| 2020 |
Kinsler G, Geiler-Samerotte K, Petrov DA. Fitness variation across subtle environmental perturbations reveals local modularity and global pleiotropy of adaptation. Elife. 9. PMID 33263280 DOI: 10.7554/eLife.61271 |
0.797 |
|
| 2020 |
Harpak A, Garud N, Rosenberg NA, Petrov DA, Combs M, Pennings PS, Munshi-South J. Genetic Adaptation in New York City Rats. Genome Biology and Evolution. PMID 33211096 DOI: 10.1093/gbe/evaa247 |
0.714 |
|
| 2020 |
Enard D, Petrov DA. Ancient RNA virus epidemics through the lens of recent adaptation in human genomes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190575. PMID 33012231 DOI: 10.1098/rstb.2019.0575 |
0.311 |
|
| 2020 |
Armstrong EE, Taylor RW, Miller DE, Kaelin CB, Barsh GS, Hadly EA, Petrov D. Long live the king: chromosome-level assembly of the lion (Panthera leo) using linked-read, Hi-C, and long-read data. Bmc Biology. 18: 3. PMID 31915011 DOI: 10.1186/S12915-019-0734-5 |
0.796 |
|
| 2019 |
Tilk S, Bergland A, Goodman A, Schmidt P, Petrov D, Greenblum S. Accurate Allele Frequencies from Ultra-low Coverage Pool-Seq Samples in Evolve-and-Resequence Experiments. G3 (Bethesda, Md.). PMID 31636085 DOI: 10.1534/G3.119.400755 |
0.795 |
|
| 2019 |
Rudman SM, Greenblum S, Hughes RC, Rajpurohit S, Kiratli O, Lowder DB, Lemmon SG, Petrov DA, Chaston JM, Schmidt P. Microbiome composition shapes rapid genomic adaptation of . Proceedings of the National Academy of Sciences of the United States of America. PMID 31527278 DOI: 10.1073/Pnas.1907787116 |
0.822 |
|
| 2019 |
Natesh M, Taylor RW, Truelove NK, Hadly EA, Palumbi SR, Petrov DA, Ramakrishnan U. Empowering conservation practice with efficient and economical genotyping from poor quality samples. Methods in Ecology and Evolution. 10: 853-859. PMID 31511786 DOI: 10.1111/2041-210X.13173 |
0.709 |
|
| 2019 |
Rech GE, Bogaerts-Márquez M, Barrón MG, Merenciano M, Villanueva-Cañas JL, Horváth V, Fiston-Lavier AS, Luyten I, Venkataram S, Quesneville H, Petrov DA, González J. Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila. Plos Genetics. 15: e1007900. PMID 30753202 DOI: 10.1371/Journal.Pgen.1007900 |
0.818 |
|
| 2018 |
Combs PA, Krupp JJ, Khosla NM, Bua D, Petrov DA, Levine JD, Fraser HB. Tissue-Specific cis-Regulatory Divergence Implicates eloF in Inhibiting Interspecies Mating in Drosophila. Current Biology : Cb. 28: 3969-3975.e3. PMID 30503619 DOI: 10.1016/J.Cub.2018.10.036 |
0.585 |
|
| 2018 |
Armstrong EE, Taylor RW, Prost S, Blinston P, van der Meer E, Madzikanda H, Mufute O, Mandisodza-Chikerema R, Stuelpnagel J, Sillero-Zubiri C, Petrov D. Cost-effective assembly of the African wild dog (Lycaon pictus) genome using linked reads. Gigascience. PMID 30346553 DOI: 10.1093/Gigascience/Giy124 |
0.807 |
|
| 2018 |
Rajpurohit S, Gefen E, Bergland AO, Petrov DA, Gibbs AG, Schmidt P. Spatiotemporal dynamics and genome-wide association analysis of desiccation tolerance in Drosophila melanogaster. Molecular Ecology. PMID 30051644 DOI: 10.1111/Mec.14814 |
0.73 |
|
| 2018 |
Rogers ZN, McFarland CD, Winters IP, Seoane JA, Brady JJ, Yoon S, Curtis C, Petrov DA, Winslow MM. Mapping the in vivo fitness landscape of lung adenocarcinoma tumor suppression in mice. Nature Genetics. PMID 29610476 DOI: 10.1038/S41588-018-0083-2 |
0.795 |
|
| 2018 |
Li Y, Venkataram S, Agarwala A, Dunn B, Petrov DA, Sherlock G, Fisher DS. Hidden Complexity of Yeast Adaptation under Simple Evolutionary Conditions. Current Biology : Cb. PMID 29429618 DOI: 10.1016/J.Cub.2018.01.009 |
0.783 |
|
| 2018 |
Behrman EL, Howick VM, Kapun M, Staubach F, Bergland AO, Petrov DA, Lazzaro BP, Schmidt PS. Rapid seasonal evolution in innate immunity of wild Drosophila melanogaster. Proceedings. Biological Sciences. 285. PMID 29321302 DOI: 10.1098/Rspb.2017.2599 |
0.704 |
|
| 2018 |
Winters IP, Rogers ZN, McFarland CD, Lalgudi PV, Chiou S, Kay MA, Petrov D, Winslow MM. Abstract IA03: Functional lung cancer genomics through in vivo genome editing Clinical Cancer Research. 24. DOI: 10.1158/1557-3265.Aacriaslc18-Ia03 |
0.816 |
|
| 2018 |
McCoy R, Demko Z, Ryan A, Banjevic M, Hill M, Sigurjonsson S, Rabinowitz M, Fraser H, Petrov D. Common variants associated with mitotic-origin of aneuploidy in human embryos Reproductive Biomedicine Online. 36: e1. DOI: 10.1016/J.Rbmo.2017.10.002 |
0.603 |
|
| 2017 |
Winters IP, Chiou SH, Paulk NK, McFarland CD, Lalgudi PV, Ma RK, Lisowski L, Connolly AJ, Petrov DA, Kay MA, Winslow MM. Multiplexed in vivo homology-directed repair and tumor barcoding enables parallel quantification of Kras variant oncogenicity. Nature Communications. 8: 2053. PMID 29233960 DOI: 10.1038/S41467-017-01519-Y |
0.82 |
|
| 2017 |
Wittmann MJ, Bergland AO, Feldman MW, Schmidt PS, Petrov DA. Seasonally fluctuating selection can maintain polymorphism at many loci via segregation lift. Proceedings of the National Academy of Sciences of the United States of America. PMID 29087300 DOI: 10.1073/Pnas.1702994114 |
0.716 |
|
| 2017 |
Assaf ZJ, Park J, Tilk S, Siegal ML, Petrov D. Deep sequencing of natural and experimental populations of Drosophila melanogaster reveals biases in the spectrum of new mutations. Genome Research. PMID 29079675 DOI: 10.1101/gr.219956.116 |
0.678 |
|
| 2017 |
Ebel ER, Telis N, Venkataram S, Petrov DA, Enard D. High rate of adaptation of mammalian proteins that interact with Plasmodium and related parasites. Plos Genetics. 13: e1007023. PMID 28957326 DOI: 10.1371/Journal.Pgen.1007023 |
0.771 |
|
| 2017 |
Rogers ZN, McFarland CD, Winters IP, Naranjo S, Chuang CH, Petrov D, Winslow MM. A quantitative and multiplexed approach to uncover the fitness landscape of tumor suppression in vivo. Nature Methods. PMID 28530655 DOI: 10.1038/Nmeth.4297 |
0.797 |
|
| 2017 |
Wilson BA, Pennings PS, Petrov DA. Soft Selective Sweeps in Evolutionary Rescue. Genetics. PMID 28213477 DOI: 10.1534/genetics.116.191478 |
0.303 |
|
| 2016 |
Rajpurohit S, Hanus R, Vrkoslav V, Behrman EL, Bergland AO, Petrov D, Cvačka J, Schmidt PS. Adaptive dynamics of cuticular hydrocarbons in Drosophila. Journal of Evolutionary Biology. PMID 27718537 DOI: 10.1111/Jeb.12988 |
0.727 |
|
| 2016 |
Venkataram S, Dunn B, Li Y, Agarwala A, Chang J, Ebel ER, Geiler-Samerotte K, Hérissant L, Blundell JR, Levy SF, Fisher DS, Sherlock G, Petrov DA. Development of a Comprehensive Genotype-to-Fitness Map of Adaptation-Driving Mutations in Yeast. Cell. PMID 27594428 DOI: 10.1016/J.Cell.2016.08.002 |
0.797 |
|
| 2016 |
Sellis D, Kvitek DJ, Dunn B, Sherlock G, Petrov DA. Empirical Evidence for Heterozygote Advantage in Adapting Diploid Populations of Saccharomyces cerevisiae. Genetics. PMID 27194750 DOI: 10.1534/Genetics.115.185165 |
0.799 |
|
| 2016 |
Garud NR, Petrov DA. Elevation of Linkage Disequilibrium Above Neutral Expectations in Ancestral and Derived Populations of Drosophila melanogaster. Genetics. PMID 27098909 DOI: 10.1534/Genetics.115.184002 |
0.744 |
|
| 2015 |
Zhao X, Bergland AO, Behrman EL, Gregory BD, Petrov DA, Schmidt PS. Global transcriptional profiling of diapause and climatic adaptation in Drosophila melanogaster. Molecular Biology and Evolution. PMID 26568616 DOI: 10.1093/Molbev/Msv263 |
0.712 |
|
| 2015 |
Bergland AO, Tobler R, González J, Schmidt P, Petrov D. Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation in Drosophila melanogaster. Molecular Ecology. PMID 26547394 DOI: 10.1111/Mec.13455 |
0.755 |
|
| 2015 |
Machado HE, Bergland AO, O'Brien KR, Behrman EL, Schmidt PS, Petrov DA. Comparative population genomics of latitudinal variation in D. simulans and D. melanogaster. Molecular Ecology. PMID 26523848 DOI: 10.1111/Mec.13446 |
0.716 |
|
| 2015 |
Glémin S, Arndt PF, Messer PW, Petrov D, Galtier N, Duret L. Quantification of GC-biased gene conversion in the human genome. Genome Research. PMID 25995268 DOI: 10.1101/Gr.185488.114 |
0.683 |
|
| 2015 |
McCoy RC, Demko Z, Ryan A, Banjevic M, Hill M, Sigurjonsson S, Rabinowitz M, Fraser HB, Petrov DA. Common variants spanning PLK4 are associated with mitotic-origin aneuploidy in human embryos. Science (New York, N.Y.). 348: 235-8. PMID 25859044 DOI: 10.1097/Ogx.0000000000000223 |
0.612 |
|
| 2015 |
Levy SF, Blundell JR, Venkataram S, Petrov DA, Fisher DS, Sherlock G. Quantitative evolutionary dynamics using high-resolution lineage tracking. Nature. 519: 181-6. PMID 25731169 DOI: 10.1038/Nature14279 |
0.806 |
|
| 2015 |
Garud NR, Messer PW, Buzbas EO, Petrov DA. Recent selective sweeps in North American Drosophila melanogaster show signatures of soft sweeps. Plos Genetics. 11: e1005004. PMID 25706129 DOI: 10.1371/Journal.Pgen.1005004 |
0.763 |
|
| 2015 |
Fiston-Lavier AS, Barrón MG, Petrov DA, González J. T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data. Nucleic Acids Research. 43: e22. PMID 25510498 DOI: 10.1093/Nar/Gku1250 |
0.802 |
|
| 2014 |
Bergland AO, Behrman EL, O'Brien KR, Schmidt PS, Petrov DA. Genomic evidence of rapid and stable adaptive oscillations over seasonal time scales in Drosophila. Plos Genetics. 10: e1004775. PMID 25375361 DOI: 10.1371/Journal.Pgen.1004775 |
0.732 |
|
| 2014 |
Barrón MG, Fiston-Lavier AS, Petrov DA, González J. Population genomics of transposable elements in Drosophila. Annual Review of Genetics. 48: 561-81. PMID 25292358 DOI: 10.1146/Annurev-Genet-120213-092359 |
0.821 |
|
| 2014 |
Zhu YO, Siegal ML, Hall DW, Petrov DA. Reply to Chen and Zhang: On interpreting genome-wide trends from yeast mutation accumulation data. Proceedings of the National Academy of Sciences of the United States of America. 111: E4063. PMID 25217565 DOI: 10.1073/Pnas.1413861111 |
0.661 |
|
| 2014 |
McCoy RC, Taylor RW, Blauwkamp TA, Kelley JL, Kertesz M, Pushkarev D, Petrov DA, Fiston-Lavier AS. Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements. Plos One. 9: e106689. PMID 25188499 DOI: 10.1371/Journal.Pone.0106689 |
0.8 |
|
| 2014 |
Zhu YO, Siegal ML, Hall DW, Petrov DA. Precise estimates of mutation rate and spectrum in yeast. Proceedings of the National Academy of Sciences of the United States of America. 111: E2310-8. PMID 24847077 DOI: 10.1073/Pnas.1323011111 |
0.658 |
|
| 2014 |
Lawrie DS, Petrov DA. Comparative population genomics: power and principles for the inference of functionality. Trends in Genetics : Tig. 30: 133-9. PMID 24656563 DOI: 10.1016/j.tig.2014.02.002 |
0.33 |
|
| 2014 |
McCoy RC, Garud NR, Kelley JL, Boggs CL, Petrov DA. Genomic inference accurately predicts the timing and severity of a recent bottleneck in a nonmodel insect population. Molecular Ecology. 23: 136-50. PMID 24237665 DOI: 10.1111/Mec.12591 |
0.755 |
|
| 2013 |
Messer PW, Petrov DA. Population genomics of rapid adaptation by soft selective sweeps. Trends in Ecology & Evolution. 28: 659-69. PMID 24075201 DOI: 10.1016/j.tree.2013.08.003 |
0.36 |
|
| 2013 |
Messer PW, Petrov DA. Frequent adaptation and the McDonald-Kreitman test. Proceedings of the National Academy of Sciences of the United States of America. 110: 8615-20. PMID 23650353 DOI: 10.1073/pnas.1220835110 |
0.322 |
|
| 2012 |
Feder AF, Petrov DA, Bergland AO. LDx: estimation of linkage disequilibrium from high-throughput pooled resequencing data. Plos One. 7: e48588. PMID 23152785 DOI: 10.1371/Journal.Pone.0048588 |
0.686 |
|
| 2012 |
Staubach F, Lorenc A, Messer PW, Tang K, Petrov DA, Tautz D. Genome patterns of selection and introgression of haplotypes in natural populations of the house mouse (Mus musculus). Plos Genetics. 8: e1002891. PMID 22956910 DOI: 10.1371/journal.pgen.1002891 |
0.368 |
|
| 2012 |
Zhu Y, Bergland AO, González J, Petrov DA. Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster. Plos One. 7: e41901. PMID 22848651 DOI: 10.1371/Journal.Pone.0041901 |
0.729 |
|
| 2012 |
González J, Petrov DA. Evolution of genome content: population dynamics of transposable elements in flies and humans. Methods in Molecular Biology (Clifton, N.J.). 855: 361-83. PMID 22407716 DOI: 10.1007/978-1-61779-582-4_13 |
0.347 |
|
| 2011 |
Sellis D, Callahan BJ, Petrov DA, Messer PW. Heterozygote advantage as a natural consequence of adaptation in diploids. Proceedings of the National Academy of Sciences of the United States of America. 108: 20666-71. PMID 22143780 DOI: 10.1073/Pnas.1114573108 |
0.8 |
|
| 2011 |
Lawrie DS, Petrov DA, Messer PW. Faster than neutral evolution of constrained sequences: the complex interplay of mutational biases and weak selection. Genome Biology and Evolution. 3: 383-95. PMID 21498884 DOI: 10.1093/gbe/evr032 |
0.337 |
|
| 2011 |
Markova-Raina P, Petrov D. High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes. Genome Research. 21: 863-74. PMID 21393387 DOI: 10.1101/Gr.115949.110 |
0.416 |
|
| 2011 |
Fiston-Lavier AS, Carrigan M, Petrov DA, González J. T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data. Nucleic Acids Research. 39: e36. PMID 21177644 DOI: 10.1093/Nar/Gkq1291 |
0.755 |
|
| 2011 |
Petrov DA, Fiston-Lavier AS, Lipatov M, Lenkov K, González J. Population genomics of transposable elements in Drosophila melanogaster. Molecular Biology and Evolution. 28: 1633-44. PMID 21172826 DOI: 10.1093/Molbev/Msq337 |
0.764 |
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| 2010 |
Cai JJ, Borenstein E, Petrov DA. Broker genes in human disease. Genome Biology and Evolution. 2: 815-25. PMID 20937604 DOI: 10.1093/Gbe/Evq064 |
0.593 |
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| 2010 |
Hershberg R, Petrov DA. Evidence that mutation is universally biased towards AT in bacteria. Plos Genetics. 6: e1001115. PMID 20838599 DOI: 10.1371/journal.pgen.1001115 |
0.312 |
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| 2010 |
Fiston-Lavier AS, Singh ND, Lipatov M, Petrov DA. Drosophila melanogaster recombination rate calculator. Gene. 463: 18-20. PMID 20452408 DOI: 10.1016/J.Gene.2010.04.015 |
0.797 |
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| 2010 |
González J, Karasov TL, Messer PW, Petrov DA. Genome-wide patterns of adaptation to temperate environments associated with transposable elements in Drosophila. Plos Genetics. 6: e1000905. PMID 20386746 DOI: 10.1371/journal.pgen.1000905 |
0.328 |
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| 2010 |
Chan YF, Marks ME, Jones FC, Villarreal G, Shapiro MD, Brady SD, Southwick AM, Absher DM, Grimwood J, Schmutz J, Myers RM, Petrov D, Jónsson B, Schluter D, Bell MA, et al. Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer. Science (New York, N.Y.). 327: 302-5. PMID 20007865 DOI: 10.1126/Science.1182213 |
0.4 |
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| 2009 |
Cai JJ, Borenstein E, Chen R, Petrov DA. Similarly strong purifying selection acts on human disease genes of all evolutionary ages. Genome Biology and Evolution. 1: 131-44. PMID 20333184 DOI: 10.1093/Gbe/Evp013 |
0.582 |
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| 2009 |
Krane DE, Bahn V, Balding D, Barlow B, Cash H, Desportes BL, D'Eustachio P, Devlin K, Doom TE, Dror I, Ford S, Funk C, Gilder J, Hampikian G, Inman K, ... ... Petrov DA, et al. Time for DNA disclosure. Science (New York, N.Y.). 326: 1631-2. PMID 20019271 DOI: 10.1126/Science.326.5960.1631 |
0.431 |
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| 2009 |
González J, Petrov D. Genetics. MITEs--the ultimate parasites. Science (New York, N.Y.). 325: 1352-3. PMID 19745141 DOI: 10.1126/Science.1179556 |
0.454 |
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| 2009 |
González J, Petrov DA. The adaptive role of transposable elements in the Drosophila genome. Gene. 448: 124-33. PMID 19555747 DOI: 10.1016/j.gene.2009.06.008 |
0.377 |
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| 2009 |
Sella G, Petrov DA, Przeworski M, Andolfatto P. Pervasive natural selection in the Drosophila genome? Plos Genetics. 5: e1000495. PMID 19503600 DOI: 10.1371/Journal.Pgen.1000495 |
0.383 |
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| 2009 |
Li VC, Davis JC, Lenkov K, Bolival B, Fuller MT, Petrov DA. Molecular evolution of the testis TAFs of Drosophila. Molecular Biology and Evolution. 26: 1103-16. PMID 19244474 DOI: 10.1093/Molbev/Msp030 |
0.538 |
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| 2008 |
González J, Lenkov K, Lipatov M, Macpherson JM, Petrov DA. High rate of recent transposable element-induced adaptation in Drosophila melanogaster. Plos Biology. 6: e251. PMID 18942889 DOI: 10.1371/journal.pbio.0060251 |
0.354 |
|
| 2008 |
Dean EJ, Davis JC, Davis RW, Petrov DA. Pervasive and persistent redundancy among duplicated genes in yeast. Plos Genetics. 4: e1000113. PMID 18604285 DOI: 10.1371/Journal.Pgen.1000113 |
0.536 |
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| 2008 |
Macpherson JM, González J, Witten DM, Davis JC, Rosenberg NA, Hirsh AE, Petrov DA. Nonadaptive explanations for signatures of partial selective sweeps in Drosophila. Molecular Biology and Evolution. 25: 1025-42. PMID 18199829 DOI: 10.1093/Molbev/Msn007 |
0.6 |
|
| 2007 |
Singh ND, Petrov DA. Evolution of gene function on the X chromosome versus the autosomes. Genome Dynamics. 3: 101-18. PMID 18753787 DOI: 10.1159/000107606 |
0.595 |
|
| 2007 |
Macpherson JM, Sella G, Davis JC, Petrov DA. Genomewide spatial correspondence between nonsynonymous divergence and neutral polymorphism reveals extensive adaptation in Drosophila. Genetics. 177: 2083-99. PMID 18073425 DOI: 10.1534/Genetics.107.080226 |
0.575 |
|
| 2007 |
Singh ND, Macpherson JM, Jensen JD, Petrov DA. Similar levels of X-linked and autosomal nucleotide variation in African and non-African populations of Drosophila melanogaster. Bmc Evolutionary Biology. 7: 202. PMID 17961244 DOI: 10.1186/1471-2148-7-202 |
0.6 |
|
| 2007 |
Oliver MJ, Petrov D, Ackerly D, Falkowski P, Schofield OM. The mode and tempo of genome size evolution in eukaryotes. Genome Research. 17: 594-601. PMID 17420184 DOI: 10.1101/Gr.6096207 |
0.432 |
|
| 2006 |
Singh ND, Arndt PF, Petrov DA. Minor shift in background substitutional patterns in the Drosophila saltans and willistoni lineages is insufficient to explain GC content of coding sequences. Bmc Biology. 4: 37. PMID 17049096 DOI: 10.1186/1741-7007-4-37 |
0.605 |
|
| 2006 |
Boissinot S, Davis J, Entezam A, Petrov D, Furano AV. Fitness cost of LINE-1 (L1) activity in humans. Proceedings of the National Academy of Sciences of the United States of America. 103: 9590-4. PMID 16766655 DOI: 10.1073/Pnas.0603334103 |
0.525 |
|
| 2005 |
Lipatov M, Lenkov K, Petrov DA, Bergman CM. Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome. Bmc Biology. 3: 24. PMID 16283942 DOI: 10.1186/1741-7007-3-24 |
0.631 |
|
| 2005 |
Davis JC, Petrov DA. Do disparate mechanisms of duplication add similar genes to the genome? Trends in Genetics : Tig. 21: 548-51. PMID 16098632 DOI: 10.1016/J.Tig.2005.07.008 |
0.538 |
|
| 2005 |
Singh ND, Davis JC, Petrov DA. Codon bias and noncoding GC content correlate negatively with recombination rate on the Drosophila X chromosome. Journal of Molecular Evolution. 61: 315-24. PMID 16044248 DOI: 10.1007/S00239-004-0287-1 |
0.689 |
|
| 2005 |
Singh ND, Davis JC, Petrov DA. X-linked genes evolve higher codon bias in Drosophila and Caenorhabditis. Genetics. 171: 145-55. PMID 15965246 DOI: 10.1534/Genetics.105.043497 |
0.688 |
|
| 2005 |
Arndt PF, Hwa T, Petrov DA. Substantial regional variation in substitution rates in the human genome: importance of GC content, gene density, and telomere-specific effects. Journal of Molecular Evolution. 60: 748-63. PMID 15959677 DOI: 10.1007/S00239-004-0222-5 |
0.318 |
|
| 2005 |
Davis JC, Brandman O, Petrov DA. Protein evolution in the context of Drosophila development. Journal of Molecular Evolution. 60: 774-85. PMID 15909223 DOI: 10.1007/S00239-004-0241-2 |
0.524 |
|
| 2005 |
Gu Z, David L, Petrov D, Jones T, Davis RW, Steinmetz LM. Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 102: 1092-7. PMID 15647350 DOI: 10.1073/Pnas.0409159102 |
0.353 |
|
| 2005 |
Knight CA, Molinari NA, Petrov DA. The large genome constraint hypothesis: evolution, ecology and phenotype. Annals of Botany. 95: 177-90. PMID 15596465 DOI: 10.1093/Aob/Mci011 |
0.337 |
|
| 2005 |
Singh ND, Arndt PF, Petrov DA. Genomic heterogeneity of background substitutional patterns in Drosophila melanogaster. Genetics. 169: 709-22. PMID 15520267 DOI: 10.1534/Genetics.104.032250 |
0.662 |
|
| 2004 |
Morris JR, Petrov DA, Lee AM, Wu CT. Enhancer choice in cis and in trans in Drosophila melanogaster: role of the promoter. Genetics. 167: 1739-47. PMID 15342512 DOI: 10.1534/genetics.104.026955 |
0.425 |
|
| 2004 |
Davis JC, Petrov DA. Preferential duplication of conserved proteins in eukaryotic genomes. Plos Biology. 2: E55. PMID 15024414 DOI: 10.1371/Journal.Pbio.0020055 |
0.592 |
|
| 2004 |
Singh ND, Petrov DA. Rapid sequence turnover at an intergenic locus in Drosophila. Molecular Biology and Evolution. 21: 670-80. PMID 14739245 DOI: 10.1093/Molbev/Msh060 |
0.624 |
|
| 2003 |
Bensasson D, Feldman MW, Petrov DA. Rates of DNA duplication and mitochondrial DNA insertion in the human genome. Journal of Molecular Evolution. 57: 343-54. PMID 14629044 DOI: 10.1007/S00239-003-2485-7 |
0.7 |
|
| 2003 |
Petrov DA, Aminetzach YT, Davis JC, Bensasson D, Hirsh AE. Size matters: non-LTR retrotransposable elements and ectopic recombination in Drosophila. Molecular Biology and Evolution. 20: 880-92. PMID 12716993 DOI: 10.1093/Molbev/Msg102 |
0.772 |
|
| 2002 |
Petrov DA. DNA loss and evolution of genome size in Drosophila Genetica. 115: 81-91. PMID 12188050 DOI: 10.1023/A:1016076215168 |
0.343 |
|
| 2002 |
Petrov DA. Mutational equilibrium model of genome size evolution Theoretical Population Biology. 61: 531-544. PMID 12167373 DOI: 10.1006/tpbi.2002.1605 |
0.323 |
|
| 2001 |
Walbot V, Petrov DA. Gene galaxies in the maize genome Proceedings of the National Academy of Sciences of the United States of America. 98: 8163-8164. PMID 11459945 DOI: 10.1073/Pnas.161278798 |
0.336 |
|
| 2001 |
Petrov DA. Evolution of genome size: New approaches to an old problem Trends in Genetics. 17: 23-28. PMID 11163918 DOI: 10.1016/S0168-9525(00)02157-0 |
0.308 |
|
| 2001 |
Bensasson D, Petrov DA, Zhang DX, Hartl DL, Hewitt GM. Genomic gigantism: DNA loss is slow in mountain grasshoppers. Molecular Biology and Evolution. 18: 246-53. PMID 11158383 DOI: 10.1093/Oxfordjournals.Molbev.A003798 |
0.788 |
|
| 2000 |
Petrov DA, Hartl DL. Pseudogene evolution and natural selection for a compact genome. The Journal of Heredity. 91: 221-7. PMID 10833048 DOI: 10.1093/Jhered/91.3.221 |
0.681 |
|
| 2000 |
Petrov DA, Sangster TA, Johnston JS, Hartl DL, Shaw KL. Evidence for DNA loss as a determinant of genome size. Science (New York, N.Y.). 287: 1060-2. PMID 10669421 DOI: 10.1126/Science.287.5455.1060 |
0.657 |
|
| 1999 |
Lozovskaya ER, Nurminsky DI, Petrov DA, Hartl DL. Genome size as a mutation-selection-drift process. Genes & Genetic Systems. 74: 201-7. PMID 10734601 DOI: 10.1266/Ggs.74.201 |
0.793 |
|
| 1999 |
Petrov DA, Hartl DL. Patterns of nucleotide substitution in Drosophila and mammalian genomes. Proceedings of the National Academy of Sciences of the United States of America. 96: 1475-9. PMID 9990048 DOI: 10.1073/Pnas.96.4.1475 |
0.628 |
|
| 1998 |
Petrov DA, Chao YC, Stephenson EC, Hartl DL. Pseudogene evolution in Drosophila suggests a high rate of DNA loss. Molecular Biology and Evolution. 15: 1562-7. PMID 12572619 DOI: 10.1093/Oxfordjournals.Molbev.A025883 |
0.567 |
|
| 1998 |
Moriyama EN, Petrov DA, Hartl DL. Genome size and intron size in Drosophila. Molecular Biology and Evolution. 15: 770-3. PMID 9615458 DOI: 10.1093/Oxfordjournals.Molbev.A025980 |
0.608 |
|
| 1998 |
Petrov DA, Hartl DL. High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups. Molecular Biology and Evolution. 15: 293-302. PMID 9501496 DOI: 10.1093/Oxfordjournals.Molbev.A025926 |
0.629 |
|
| 1998 |
Petrov DA, Chao YC, Stephenson EC, Hartl DL. Pseudogene evolution in Drosophila suggests a high rate of DNA loss [1] Molecular Biology and Evolution. 15: 1562-1567. |
0.567 |
|
| 1997 |
Petrov D. Slow but Steady: Reduction of Genome Size through Biased Mutation. The Plant Cell. 9: 1900-1901. PMID 12237350 DOI: 10.1105/Tpc.9.11.1900 |
0.407 |
|
| 1997 |
Petrov DA, Hartl DL. Trash DNA is what gets thrown away: high rate of DNA loss in Drosophila. Gene. 205: 279-89. PMID 9461402 DOI: 10.1016/S0378-1119(97)00516-7 |
0.592 |
|
| 1997 |
Petrov D, Bennetzen JL, Kellogg EA. Slow but Steady: Reduction of Genome Size through Biased Mutation [with Reply] The Plant Cell. 9: 1900. DOI: 10.2307/3870552 |
0.407 |
|
| 1996 |
Petrov DA, Lozovskaya ER, Hartl DL. High intrinsic rate of DNA loss in Drosophila. Nature. 384: 346-9. PMID 8934517 DOI: 10.1038/384346A0 |
0.621 |
|
| 1996 |
Siegal ML, Petrov DA, De Aguiar D. Triple-ligation strategy with advantages over directional cloning. Biotechniques. 21: 614, 616, 618-9. PMID 8891209 DOI: 10.2144/96214Bm09 |
0.596 |
|
| 1995 |
Lozovskaya ER, Hartl DL, Petrov DA. Genomic regulation of transposable elements in Drosophila. Current Opinion in Genetics & Development. 5: 768-73. PMID 8745075 DOI: 10.1016/0959-437X(95)80009-T |
0.63 |
|
| 1995 |
Petrov DA, Schutzman JL, Hartl DL, Lozovskaya ER. Diverse transposable elements are mobilized in hybrid dysgenesis in Drosophila virilis. Proceedings of the National Academy of Sciences of the United States of America. 92: 8050-4. PMID 7644536 DOI: 10.1073/Pnas.92.17.8050 |
0.558 |
|
| 1993 |
Lozovskaya ER, Petrov DA, Hartl DL. A combined molecular and cytogenetic approach to genome evolution in Drosophila using large-fragment DNA cloning. Chromosoma. 102: 253-66. PMID 8486077 DOI: 10.1007/Bf00352399 |
0.634 |
|
| 1992 |
Krane DE, Allen RW, Sawyer SA, Petrov DA, Hartl DL. Genetic differences at four DNA typing loci in Finnish, Italian, and mixed Caucasian populations. Proceedings of the National Academy of Sciences of the United States of America. 89: 10583-7. PMID 1438254 DOI: 10.1073/Pnas.89.22.10583 |
0.618 |
|
| 1992 |
Danilevskaya ON, Petrov DA, Pavlova MN, Koga A, Kurenova EV, Hartl DL. A repetitive DNA element, associated with telomeric sequences in Drosophila melanogaster, contains open reading frames. Chromosoma. 102: 32-40. PMID 1291227 DOI: 10.1007/Bf00352288 |
0.572 |
|
| 1991 |
Smoller DA, Petrov D, Hartl DL. Characterization of bacteriophage P1 library containing inserts of Drosophila DNA of 75-100 kilobase pairs. Chromosoma. 100: 487-94. PMID 1764967 DOI: 10.1007/Bf00352199 |
0.661 |
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