| Year |
Citation |
Score |
| 2024 |
Brewer BJ, Dunham MJ, Raghuraman MK. A unifying model that explains the origins of human inverted copy number variants. Plos Genetics. 20: e1011091. PMID 38175827 DOI: 10.1371/journal.pgen.1011091 |
0.748 |
|
| 2024 |
Martin R, Espinoza CY, Large CRL, Rosswork J, Van Bruinisse C, Miller AW, Sanchez JC, Miller M, Paskvan S, Alvino GM, Dunham MJ, Raghuraman MK, Brewer BJ. Template switching between the leading and lagging strands at replication forks generates inverted copy number variants through hairpin-capped extrachromosomal DNA. Plos Genetics. 20: e1010850. PMID 38175823 DOI: 10.1371/journal.pgen.1010850 |
0.773 |
|
| 2023 |
Kwan EX, Alvino GM, Lynch KL, Levan PF, Amemiya HM, Wang XS, Johnson SA, Sanchez JC, Miller MA, Croy M, Lee SB, Naushab M, Bedalov A, Cuperus JT, Brewer BJ, et al. Ribosomal DNA replication time coordinates completion of genome replication and anaphase in yeast. Cell Reports. 42: 112161. PMID 36842087 DOI: 10.1016/j.celrep.2023.112161 |
0.786 |
|
| 2023 |
Hoerr RE, Eng A, Payen C, Di Rienzi SC, Raghuraman MK, Dunham MJ, Brewer BJ, Friedman KL. Hotspot of de novo telomere addition stabilizes linear amplicons in yeast grown in sulfate-limiting conditions. Genetics. PMID 36702776 DOI: 10.1093/genetics/iyad010 |
0.745 |
|
| 2020 |
Kwan EX, Alvino GM, Queitsch C, Brewer BJ, Raghuraman MK. Small but greedy: a minimal rDNA array outcompetes the genome for replication initiation The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.04683 |
0.739 |
|
| 2019 |
Morton EA, Hall AN, Kwan E, Mok C, Queitsch K, Nandakumar V, Stamatoyannopoulos J, Brewer BJ, Waterston R, Queitsch C. Challenges and Approaches to Genotyping Repetitive DNA. G3 (Bethesda, Md.). PMID 31757929 DOI: 10.1534/G3.119.400771 |
0.427 |
|
| 2019 |
Lynch KL, Alvino GM, Kwan EX, Brewer BJ, Raghuraman MK. The effects of manipulating levels of replication initiation factors on origin firing efficiency in yeast. Plos Genetics. 15: e1008430. PMID 31584938 DOI: 10.1371/Journal.Pgen.1008430 |
0.777 |
|
| 2019 |
Sanchez JC, Ollodart A, Large CRL, Clough C, Alvino GM, Tsuchiya M, Crane M, Kwan EX, Kaeberlein M, Dunham MJ, Raghuraman MK, Brewer BJ. Phenotypic and Genotypic Consequences of CRISPR/Cas9 Editing of the Replication Origins in the rDNA of . Genetics. PMID 31292210 DOI: 10.1534/Genetics.119.302351 |
0.768 |
|
| 2017 |
Sanchez JC, Kwan EX, Pohl TJ, Amemiya HM, Raghuraman MK, Brewer BJ. Defective replication initiation results in locus specific chromosome breakage and a ribosomal RNA deficiency in yeast. Plos Genetics. 13: e1007041. PMID 29036220 DOI: 10.1371/Journal.Pgen.1007041 |
0.857 |
|
| 2016 |
Kwan EX, Wang XS, Amemiya HM, Brewer BJ, Raghuraman MK. rDNA Copy Number Variants Are Frequent Passenger Mutations in S. cerevisiae Deletion Collections and De Novo Transformants. G3 (Bethesda, Md.). PMID 27449518 DOI: 10.1534/G3.116.030296 |
0.734 |
|
| 2015 |
Brewer BJ, Payen C, Di Rienzi SC, Higgins MM, Ong G, Dunham MJ, Raghuraman MK. Origin-Dependent Inverted-Repeat Amplification: Tests of a Model for Inverted DNA Amplification. Plos Genetics. 11: e1005699. PMID 26700858 DOI: 10.1371/Journal.Pgen.1005699 |
0.799 |
|
| 2015 |
Merrikh CN, Brewer BJ, Merrikh H. The B. subtilis Accessory Helicase PcrA Facilitates DNA Replication through Transcription Units. Plos Genetics. 11: e1005289. PMID 26070154 DOI: 10.1371/Journal.Pgen.1005289 |
0.527 |
|
| 2014 |
Liachko I, Youngblood RA, Tsui K, Bubb KL, Queitsch C, Raghuraman MK, Nislow C, Brewer BJ, Dunham MJ. GC-rich DNA elements enable replication origin activity in the methylotrophic yeast Pichia pastoris. Plos Genetics. 10: e1004169. PMID 24603708 DOI: 10.1371/Journal.Pgen.1004169 |
0.754 |
|
| 2014 |
Hiraga S, Alvino GM, Chang F, Lian HY, Sridhar A, Kubota T, Brewer BJ, Weinreich M, Raghuraman MK, Donaldson AD. Rif1 controls DNA replication by directing Protein Phosphatase 1 to reverse Cdc7-mediated phosphorylation of the MCM complex. Genes & Development. 28: 372-83. PMID 24532715 DOI: 10.1101/Gad.231258.113 |
0.752 |
|
| 2014 |
Payen C, Di Rienzi SC, Ong GT, Pogachar JL, Sanchez JC, Sunshine AB, Raghuraman MK, Brewer BJ, Dunham MJ. The dynamics of diverse segmental amplifications in populations of Saccharomyces cerevisiae adapting to strong selection. G3 (Bethesda, Md.). 4: 399-409. PMID 24368781 DOI: 10.1534/G3.113.009365 |
0.68 |
|
| 2013 |
Pohl TJ, Kolor K, Fangman WL, Brewer BJ, Raghuraman MK. A DNA sequence element that advances replication origin activation time in Saccharomyces cerevisiae. G3 (Bethesda, Md.). 3: 1955-63. PMID 24022751 DOI: 10.1534/G3.113.008250 |
0.836 |
|
| 2013 |
Kwan EX, Foss EJ, Tsuchiyama S, Alvino GM, Kruglyak L, Kaeberlein M, Raghuraman MK, Brewer BJ, Kennedy BK, Bedalov A. A natural polymorphism in rDNA replication origins links origin activation with calorie restriction and lifespan. Plos Genetics. 9: e1003329. PMID 23505383 DOI: 10.1371/Journal.Pgen.1003329 |
0.77 |
|
| 2012 |
Di Rienzi SC, Lindstrom KC, Mann T, Noble WS, Raghuraman MK, Brewer BJ. Maintaining replication origins in the face of genomic change. Genome Research. 22: 1940-52. PMID 22665441 DOI: 10.1101/Gr.138248.112 |
0.787 |
|
| 2012 |
Pohl TJ, Brewer BJ, Raghuraman MK. Functional centromeres determine the activation time of pericentric origins of DNA replication in Saccharomyces cerevisiae. Plos Genetics. 8: e1002677. PMID 22589733 DOI: 10.1371/Journal.Pgen.1002677 |
0.858 |
|
| 2011 |
Feng W, Di Rienzi SC, Raghuraman MK, Brewer BJ. Replication stress-induced chromosome breakage is correlated with replication fork progression and is preceded by single-stranded DNA formation. G3 (Bethesda, Md.). 1: 327-35. PMID 22384343 DOI: 10.1534/G3.111.000554 |
0.815 |
|
| 2011 |
Lian HY, Robertson ED, Hiraga S, Alvino GM, Collingwood D, McCune HJ, Sridhar A, Brewer BJ, Raghuraman MK, Donaldson AD. The effect of Ku on telomere replication time is mediated by telomere length but is independent of histone tail acetylation. Molecular Biology of the Cell. 22: 1753-65. PMID 21441303 DOI: 10.1091/Mbc.E10-06-0549 |
0.796 |
|
| 2011 |
Brewer BJ, Payen C, Raghuraman MK, Dunham MJ. Origin-dependent inverted-repeat amplification: a replication-based model for generating palindromic amplicons. Plos Genetics. 7: e1002016. PMID 21437266 DOI: 10.1371/Journal.Pgen.1002016 |
0.8 |
|
| 2011 |
Di Rienzi SC, Lindstrom KC, Lancaster R, Rolczynski L, Raghuraman MK, Brewer BJ. Genetic, genomic, and molecular tools for studying the protoploid yeast, L. waltii. Yeast (Chichester, England). 28: 137-51. PMID 21246627 DOI: 10.1002/Yea.1826 |
0.717 |
|
| 2010 |
Raghuraman MK, Brewer BJ. Molecular analysis of the replication program in unicellular model organisms. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 18: 19-34. PMID 20012185 DOI: 10.1007/S10577-009-9099-X |
0.729 |
|
| 2009 |
Di Rienzi SC, Collingwood D, Raghuraman MK, Brewer BJ. Fragile genomic sites are associated with origins of replication. Genome Biology and Evolution. 1: 350-63. PMID 20333204 DOI: 10.1093/Gbe/Evp034 |
0.765 |
|
| 2009 |
Feng W, Bachant J, Collingwood D, Raghuraman MK, Brewer BJ. Centromere replication timing determines different forms of genomic instability in Saccharomyces cerevisiae checkpoint mutants during replication stress. Genetics. 183: 1249-60. PMID 19805819 DOI: 10.1534/Genetics.109.107508 |
0.795 |
|
| 2008 |
McCune HJ, Danielson LS, Alvino GM, Collingwood D, Delrow JJ, Fangman WL, Brewer BJ, Raghuraman MK. The temporal program of chromosome replication: genomewide replication in clb5{Delta} Saccharomyces cerevisiae. Genetics. 180: 1833-47. PMID 18832352 DOI: 10.1534/Genetics.108.094359 |
0.851 |
|
| 2007 |
Hoang ML, Leon RP, Pessoa-Brandao L, Hunt S, Raghuraman MK, Fangman WL, Brewer BJ, Sclafani RA. Structural changes in Mcm5 protein bypass Cdc7-Dbf4 function and reduce replication origin efficiency in Saccharomyces cerevisiae. Molecular and Cellular Biology. 27: 7594-602. PMID 17724082 DOI: 10.1128/Mcb.00997-07 |
0.77 |
|
| 2007 |
Alvino GM, Collingwood D, Murphy JM, Delrow J, Brewer BJ, Raghuraman MK. Replication in hydroxyurea: it's a matter of time. Molecular and Cellular Biology. 27: 6396-406. PMID 17636020 DOI: 10.1128/Mcb.00719-07 |
0.779 |
|
| 2007 |
Feng W, Raghuraman MK, Brewer BJ. Mapping yeast origins of replication via single-stranded DNA detection. Methods (San Diego, Calif.). 41: 151-7. PMID 17189857 DOI: 10.1016/J.Ymeth.2006.07.023 |
0.775 |
|
| 2006 |
Feng W, Collingwood D, Boeck ME, Fox LA, Alvino GM, Fangman WL, Raghuraman MK, Brewer BJ. Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication Nature Cell Biology. 8: 148-155. PMID 16429127 DOI: 10.1038/Ncb1358 |
0.858 |
|
| 2002 |
Vogelauer M, Rubbi L, Lucas I, Brewer BJ, Grunstein M. Histone acetylation regulates the time of replication origin firing. Molecular Cell. 10: 1223-33. PMID 12453428 DOI: 10.1016/S1097-2765(02)00702-5 |
0.373 |
|
| 2001 |
Raghuraman MK, Winzeler EA, Collingwood D, Hunt S, Wodicka L, Conway A, Lockhart DJ, Davis RW, Brewer BJ, Fangman WL. Replication dynamics of the yeast genome. Science (New York, N.Y.). 294: 115-21. PMID 11588253 DOI: 10.1126/Science.294.5540.115 |
0.828 |
|
| 2001 |
van Brabant AJ, Buchanan CD, Charboneau E, Fangman WL, Brewer BJ. An origin-deficient yeast artificial chromosome triggers a cell cycle checkpoint. Molecular Cell. 7: 705-13. PMID 11336695 DOI: 10.1016/S1097-2765(01)00216-7 |
0.851 |
|
| 2000 |
Ward TR, Hoang ML, Prusty R, Lau CK, Keil RL, Fangman WL, Brewer BJ. Ribosomal DNA replication fork barrier and HOT1 recombination hot spot: shared sequences but independent activities. Molecular and Cellular Biology. 20: 4948-57. PMID 10848619 DOI: 10.1128/Mcb.20.13.4948-4957.2000 |
0.825 |
|
| 1999 |
Van Brabant AJ, Fangman WL, Brewer BJ. Active role of a human genomic insert in replication of a yeast artificial chromosome Molecular and Cellular Biology. 19: 4231-4240. PMID 10330163 DOI: 10.1128/Mcb.19.6.4231 |
0.858 |
|
| 1998 |
Donaldson AD, Raghuraman MK, Friedman KL, Cross FR, Brewer BJ, Fangman WL. CLB5-dependent activation of late replication origins in S. cerevisiae. Molecular Cell. 2: 173-82. PMID 9734354 DOI: 10.1016/S1097-2765(00)80127-6 |
0.828 |
|
| 1998 |
van Brabant AJ, Hunt SY, Fangman WL, Brewer BJ. Identifying sites of replication initiation in yeast chromosomes: looking for origins in all the right places. Electrophoresis. 19: 1239-46. PMID 9694258 DOI: 10.1002/Elps.1150190803 |
0.831 |
|
| 1998 |
Donaldson AD, Fangman WL, Brewer BJ. Cdc7 is required throughout the yeast S phase to activate replication origins Genes and Development. 12: 491-501. PMID 9472018 DOI: 10.1101/Gad.12.4.491 |
0.827 |
|
| 1997 |
Friedman KL, Brewer BJ, Fangman WL. Replication profile of Saccharomyces cerevisiae chromosome VI. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 2: 667-78. PMID 9491801 DOI: 10.1046/J.1365-2443.1997.1520350.X |
0.85 |
|
| 1997 |
Raghuraman MK, Brewer BJ, Fangman WL. Cell cycle-dependent establishment of a late replication program. Science (New York, N.Y.). 276: 806-9. PMID 9115207 DOI: 10.1126/Science.276.5313.806 |
0.832 |
|
| 1996 |
Friedman KL, Diller JD, Ferguson BM, Nyland SV, Brewer BJ, Fangman WL. Multiple determinants controlling activation of yeast replication origins late in S phase. Genes & Development. 10: 1595-607. PMID 8682291 DOI: 10.1101/Gad.10.13.1595 |
0.85 |
|
| 1995 |
Friedman KL, Raghuraman MK, Fangman WL, Brewer BJ. Analysis of the temporal program of replication initiation in yeast chromosomes. Journal of Cell Science. Supplement. 19: 51-8. PMID 8655647 DOI: 10.1242/Jcs.1995.Supplement_19.7 |
0.873 |
|
| 1995 |
Friedman KL, Brewer BJ. Analysis of replication intermediates by two-dimensional agarose gel electrophoresis. Methods in Enzymology. 262: 613-27. PMID 8594382 DOI: 10.1016/0076-6879(95)62048-6 |
0.422 |
|
| 1995 |
Lockshon D, Zweifel SG, Freeman-Cook LL, Lorimer HE, Brewer BJ, Fangman WL. A role for recombination junctions in the segregation of mitochondrial DNA in yeast Cell. 81: 947-955. PMID 7781070 DOI: 10.1016/0092-8674(95)90014-4 |
0.799 |
|
| 1995 |
Lorimer HE, Brewer BJ, Fangman WL. A test of the transcription model for biased inheritance of yeast mitochondrial DNA Molecular and Cellular Biology. 15: 4803-4809. PMID 7651397 DOI: 10.1128/Mcb.15.9.4803 |
0.814 |
|
| 1994 |
Brewer BJ, Fangman WL. Initiation preference at a yeast origin of replication Proceedings of the National Academy of Sciences of the United States of America. 91: 3418-3422. PMID 8159762 DOI: 10.1073/Pnas.91.8.3418 |
0.849 |
|
| 1994 |
Brewer BJ. Intergenic DNA and the sequence requirements for replication initiation in eukaryotes Current Opinion in Genetics and Development. 4: 196-202. PMID 8032196 DOI: 10.1016/S0959-437X(05)80045-0 |
0.546 |
|
| 1994 |
Raghuraman MK, Brewer BJ, Fangman WL. Activation of a yeast replication origin near a double-stranded DNA break. Genes & Development. 8: 554-62. PMID 7926750 DOI: 10.1101/Gad.8.5.554 |
0.853 |
|
| 1993 |
Brewer BJ, Fangman WL. Initiation at closely spaced replication origins in a yeast chromosome Science. 262: 1728-1731. PMID 8259517 DOI: 10.1126/Science.8259517 |
0.84 |
|
| 1993 |
Brewer BJ, Diller JD, Friedman KL, Kolor KM, Raghuraman MK, Fangman WL. The topography of chromosome replication in yeast. Cold Spring Harbor Symposia On Quantitative Biology. 58: 425-34. PMID 7956056 DOI: 10.1101/Sqb.1993.058.01.049 |
0.835 |
|
| 1992 |
Fangman WL, Brewer BJ. A question of time: Replication origins of eukaryotic chromosomes Cell. 71: 363-366. PMID 1423601 DOI: 10.1016/0092-8674(92)90505-7 |
0.821 |
|
| 1992 |
Brewer BJ, Lockshon D, Fangman WL. The arrest of replication forks in the rDNA of yeast occurs independently of transcription Cell. 71: 267-276. PMID 1423594 DOI: 10.1016/0092-8674(92)90355-G |
0.792 |
|
| 1991 |
Ferguson BM, Brewer BJ, Reynolds AE, Fangman WL. A yeast origin of replication is activated late in S phase Cell. 65: 507-515. PMID 2018976 DOI: 10.1016/0092-8674(91)90468-E |
0.846 |
|
| 1991 |
Ferguson BM, Brewer BJ, Fangman WL. Temporal control of DNA replication in yeast Cold Spring Harbor Symposia On Quantitative Biology. 56: 293-302. PMID 1819494 |
0.796 |
|
| 1991 |
Fangman WL, Brewer BJ. Activation of replication origins within yeast chromosomes Annual Review of Cell Biology. 7: 375-402. PMID 1809350 DOI: 10.1146/Annurev.Cb.07.110191.002111 |
0.799 |
|
| 1991 |
Brewer BJ, Fangman WL. Mapping replication origins in yeast chromosomes Bioessays. 13: 317-322. PMID 1759974 DOI: 10.1002/Bies.950130702 |
0.847 |
|
| 1990 |
Fangman WL, Henly JW, Brewer BJ. RPO41-independent maintenance of [rho-] mitochondrial DNA in Saccharomyces cerevisiae Molecular and Cellular Biology. 10: 10-15. PMID 2152961 DOI: 10.1128/Mcb.10.1.10 |
0.802 |
|
| 1990 |
Furter-Graves EM, Brewer BJ. The molecular biology of chromosome function Cell. 61: 379-380. DOI: 10.1016/0092-8674(90)90518-J |
0.387 |
|
| 1989 |
Fangman WL, Henly JW, Churchill G, Brewer BJ. Stable maintenance of a 35-base-pair yeast mitochondrial genome Molecular and Cellular Biology. 9: 1917-1921. PMID 2664462 DOI: 10.1128/Mcb.9.5.1917 |
0.799 |
|
| 1988 |
Brewer BJ. When polymerases collide: Replication and the transcriptional organization of the E. coli chromosome Cell. 53: 679-686. PMID 3286014 DOI: 10.1016/0092-8674(88)90086-4 |
0.444 |
|
| 1988 |
Brewer BJ, Fangman WL. A replication fork barrier at the 3′ end of yeast ribosomal RNA genes Cell. 55: 637-643. PMID 3052854 DOI: 10.1016/0092-8674(88)90222-X |
0.789 |
|
| 1987 |
Brewer BJ, Fangman WL. The localization of replication origins on ARS plasmids in S. cerevisiae Cell. 51: 463-471. PMID 2822257 DOI: 10.1016/0092-8674(87)90642-8 |
0.834 |
|
| 1984 |
Brewer BJ, Chlebowicz-Sledziewska E, Fangman WL. Cell cycle phases in the unequal mother/daughter cell cycles of Saccharomyces cerevisiae Molecular and Cellular Biology. 4: 2529-2531. PMID 6392855 DOI: 10.1128/Mcb.4.11.2529 |
0.757 |
|
| 1983 |
Brewer BJ, Martin SR, Champoux JJ. A cellular single-stranded DNA-dependent ATPase associated with simian virus 40 chromatin Journal of Biological Chemistry. 258: 4496-4502. PMID 6131894 |
0.347 |
|
| 1980 |
Brewer BJ, Zakian VA, Fangman WL. Replication and meiotic transmission of yeast ribosomal RNA genes Proceedings of the National Academy of Sciences of the United States of America. 77: 6739-6743. PMID 7005901 DOI: 10.1073/Pnas.77.11.6739 |
0.839 |
|
| 1980 |
Brewer BJ, Fangman WL. Preferential inclusion of extrachromosomal genetic elements in yeast meiotic spores Proceedings of the National Academy of Sciences of the United States of America. 77: 5380-5384. PMID 7001477 DOI: 10.1073/Pnas.77.9.5380 |
0.819 |
|
| 1979 |
Zakian VA, Brewer BJ, Fangman WL. Replication of each copy of the yeast 2 micron DNA plasmid occurs during the S phase Cell. 17: 923-934. PMID 385147 DOI: 10.1016/0092-8674(79)90332-5 |
0.837 |
|
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