Year |
Citation |
Score |
2022 |
Allen BH, Gupta N, Edirisinghe JN, Faria JP, Henry CS. Application of the Metabolic Modeling Pipeline in KBase to Categorize Reactions, Predict Essential Genes, and Predict Pathways in an Isolate Genome. Methods in Molecular Biology (Clifton, N.J.). 2349: 291-320. PMID 34719000 DOI: 10.1007/978-1-0716-1585-0_13 |
0.379 |
|
2020 |
Lieven C, Beber ME, Olivier BG, Bergmann FT, Ataman M, Babaei P, Bartell JA, Blank LM, Chauhan S, Correia K, Diener C, Dräger A, Ebert BE, Edirisinghe JN, Faria JP, et al. Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing. Nature Biotechnology. 38: 504. PMID 32265554 DOI: 10.1038/S41587-020-0477-4 |
0.333 |
|
2020 |
Lieven C, Beber ME, Olivier BG, Bergmann FT, Ataman M, Babaei P, Bartell JA, Blank LM, Chauhan S, Correia K, Diener C, Dräger A, Ebert BE, Edirisinghe JN, Faria JP, et al. MEMOTE for standardized genome-scale metabolic model testing. Nature Biotechnology. PMID 32123384 DOI: 10.1038/S41587-020-0446-Y |
0.354 |
|
2019 |
Gupta N, Skinner KA, Summers ZM, Edirisinghe JN, Faria JP, Marshall CW, Sharma A, Gottel NR, Gilbert JA, Henry CS, O'Loughlin EJ. Draft Genome Sequence of sp. Strain ATCC 49988, a Quinoline-Degrading Bacterium. Microbiology Resource Announcements. 8. PMID 31221646 DOI: 10.1128/MRA.00403-19 |
0.333 |
|
2019 |
Gupta N, Skinner KA, Khan S, Edirisinghe JN, Henry CS. Draft Genome Sequence of sp. Strain A8, a Carbazole-Degrading Bacterium. Microbiology Resource Announcements. 8. PMID 31048380 DOI: 10.1128/MRA.00301-19 |
0.319 |
|
2018 |
Edirisinghe JN, Faria JP, Harris NL, Allen BH, Henry CS. Reconstruction and Analysis of Central Metabolism in Microbes. Methods in Molecular Biology (Clifton, N.J.). 1716: 111-129. PMID 29222751 DOI: 10.1007/978-1-4939-7528-0_5 |
0.353 |
|
2017 |
Marshall CW, Ross DE, Handley KM, Weisenhorn PB, Edirisinghe JN, Henry CS, Gilbert JA, May HD, Norman RS. Metabolic Reconstruction and Modeling Microbial Electrosynthesis. Scientific Reports. 7: 8391. PMID 28827682 DOI: 10.1038/S41598-017-08877-Z |
0.325 |
|
2017 |
Juárez-Vázquez AL, Edirisinghe JN, Verduzco-Castro EA, Michalska K, Wu C, Noda-García L, Babnigg G, Endres M, Medina-Ruíz S, Santoyo-Flores J, Carrillo-Tripp M, Ton-That H, Joachimiak A, Henry CS, Barona-Gómez F. Author response: Evolution of substrate specificity in a retained enzyme driven by gene loss Elife. DOI: 10.7554/Elife.22679.034 |
0.308 |
|
2016 |
Faria JP, Davis JJ, Edirisinghe JN, Taylor RC, Weisenhorn P, Olson RD, Stevens RL, Rocha M, Rocha I, Best AA, DeJongh M, Tintle NL, Parrello B, Overbeek R, Henry CS. Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation. Frontiers in Microbiology. 7: 1819. PMID 27933038 DOI: 10.3389/Fmicb.2016.01819 |
0.369 |
|
2016 |
Edirisinghe JN, Weisenhorn P, Conrad N, Xia F, Overbeek R, Stevens RL, Henry CS. Modeling central metabolism and energy biosynthesis across microbial life. Bmc Genomics. 17: 568. PMID 27502787 DOI: 10.1186/S12864-016-2887-8 |
0.317 |
|
2016 |
Cuevas DA, Edirisinghe J, Henry CS, Overbeek R, O'Connell TG, Edwards RA. From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model. Frontiers in Microbiology. 7: 907. PMID 27379044 DOI: 10.3389/Fmicb.2016.00907 |
0.389 |
|
2015 |
Faria JP, Edirisinghe JN, Davis JJ, Disz T, Hausmann A, Henry CS, Olson R, Overbeek RA, Pusch GD, Shukla M, Vonstein V, Wattam AR. Enabling comparative modeling of closely related genomes: example genus Brucella. 3 Biotech. 5: 101-105. PMID 28324362 DOI: 10.1007/s13205-014-0202-4 |
0.311 |
|
2014 |
Fagen JR, Leonard MT, McCullough CM, Edirisinghe JN, Henry CS, Davis MJ, Triplett EW. Comparative genomics of cultured and uncultured strains suggests genes essential for free-living growth of Liberibacter. Plos One. 9: e84469. PMID 24416233 DOI: 10.1371/Journal.Pone.0084469 |
0.405 |
|
2012 |
Vos M, Esposito G, Edirisinghe JN, Vilain S, Haddad DM, Slabbaert JR, Van Meensel S, Schaap O, De Strooper B, Meganathan R, Morais VA, Verstreken P. Vitamin K2 is a mitochondrial electron carrier that rescues pink1 deficiency. Science (New York, N.Y.). 336: 1306-10. PMID 22582012 DOI: 10.1126/Science.1218632 |
0.507 |
|
2011 |
Eppinger M, Bunk B, Johns MA, Edirisinghe JN, Kutumbaka KK, Koenig SS, Creasy HH, Rosovitz MJ, Riley DR, Daugherty S, Martin M, Elbourne LD, Paulsen I, Biedendieck R, Braun C, et al. Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319. Journal of Bacteriology. 193: 4199-213. PMID 21705586 DOI: 10.1128/Jb.00449-11 |
0.468 |
|
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