Kausik Si, Ph.D - Related publications

Affiliations: 
Neuroscience Stowers Institute for Medical Research, Kansas City, MO, United States 
Area:
Memory Persistance
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Ruiz Cuevas MV, Hardy MP, Hollý J, Bonneil É, Durette C, Courcelles M, Lanoix J, Côté C, Staudt LM, Lemieux S, Thibault P, Perreault C, Yewdell JW. Most non-canonical proteins uniquely populate the proteome or immunopeptidome. Cell Reports. 34: 108815. PMID 33691108 DOI: 10.1016/j.celrep.2021.108815   
2021 An H, Richardson A, Rajasekariah P, Zhong L, Fernando BSM, Macmillan A, Klotzsch E, Bryant K, Kaakoush NO, Tedla N. Nuclear Leukocyte Immunoglobulin-like Receptor A3 Is Monomeric and Is Involved in Multiple Layers of Regulated Gene Expression and Translation. Journal of Proteome Research. PMID 33793249 DOI: 10.1021/acs.jproteome.0c00946   
2021 Jana S, Datta PP. In silico analysis of bacterial translation factors reveal distinct translation event specific pI values. Bmc Genomics. 22: 220. PMID 33781198 DOI: 10.1186/s12864-021-07472-x   
2021 Kuechler ER, Rose A, Bolten M, Madero A, Kammoonah S, Colborne S, Gsponer J, Morin GB, Mayor T. Protein feature analysis of heat shock induced ubiquitination sites reveals preferential modification site localization. Journal of Proteomics. 239: 104182. PMID 33705978 DOI: 10.1016/j.jprot.2021.104182   
2021 Conejos JRV, Ghassemi Nejad J, Kim JE, Moon JO, Lee JS, Lee HG. Supplementing with L-Tryptophan Increases Medium Protein and Alters Expression of Genes and Proteins Involved in Milk Protein Synthesis and Energy Metabolism in Bovine Mammary Cells. International Journal of Molecular Sciences. 22. PMID 33803156 DOI: 10.3390/ijms22052751   
2021 Zhu Y, Hart GW. Nutrient regulation of the flow of genetic information by O-GlcNAcylation. Biochemical Society Transactions. PMID 33769449 DOI: 10.1042/BST20200769   
2021 Gupta R, Sahu M, Srivastava D, Tiwari S, Ambasta RK, Kumar P. Post-translational modifications: Regulators of neurodegenerative proteinopathies. Ageing Research Reviews. 101336. PMID 33775891 DOI: 10.1016/j.arr.2021.101336   
2021 Cheng N, Zhang H, Zhang S, Ma X, Meng G. Crystal structure of the GTP-binding protein-like domain of AGAP1. Acta Crystallographica. Section F, Structural Biology Communications. 77: 105-112. PMID 33830075 DOI: 10.1107/S2053230X21003150   
2021 Cheng N, Zhang H, Zhang S, Ma X, Meng G. Crystal structure of the GTP-binding protein-like domain of AGAP1. Acta Crystallographica. Section F, Structural Biology Communications. 77: 105-112. PMID 33830075 DOI: 10.1107/S2053230X21003150   
2021 Croce KR, Yamamoto A. Dissolving the Complex Role Aggregation Plays in Neurodegenerative Disease. Movement Disorders : Official Journal of the Movement Disorder Society. PMID 33755257 DOI: 10.1002/mds.28522   
2021 Peng D, Ruan C, Fu S, He C, Song J, Li H, Tu Y, Tang D, Yao L, Lin S, Shi Y, Zhang W, Zhou H, Zhu L, Ma C, et al. Atg9-centered multi-omics integration reveals new autophagy regulators in . Autophagy. 1-24. PMID 33722159 DOI: 10.1080/15548627.2021.1898749   
2021 Rahaman MM, Islam R, Jewel GMNA, Hoque H. Implementation of computational approaches to explore the deleterious effects of non-synonymous SNPs on pRB protein. Journal of Biomolecular Structure & Dynamics. 1-18. PMID 33682629 DOI: 10.1080/07391102.2021.1896385   
2021 Rahaman MM, Islam R, Jewel GMNA, Hoque H. Implementation of computational approaches to explore the deleterious effects of non-synonymous SNPs on pRB protein. Journal of Biomolecular Structure & Dynamics. 1-18. PMID 33682629 DOI: 10.1080/07391102.2021.1896385   
2021 Cicardi ME, Marrone L, Azzouz M, Trotti D. Proteostatic imbalance and protein spreading in amyotrophic lateral sclerosis. The Embo Journal. e106389. PMID 33792056 DOI: 10.15252/embj.2020106389   
2021 Ortolano NA, Romero-Morales AI, Rasmussen ML, Bodnya C, Kline LA, Joshi P, Connelly JP, Rose KL, Pruett-Miller SM, Gama V. A proteomics approach for the identification of cullin-9 (CUL9) related signaling pathways in induced pluripotent stem cell models. Plos One. 16: e0248000. PMID 33705438 DOI: 10.1371/journal.pone.0248000   
2021 Sharma R, Srivastava T, Pandey AR, Mishra T, Gupta B, Reddy SS, Singh SP, Narender T, Tripathi A, Chandramouli B, Sashidhara KV, Priya S, Kumar N. Identification of natural products as potential pharmacological chaperones for protein misfolding diseases. Chemmedchem. PMID 33760394 DOI: 10.1002/cmdc.202100147   
2021 Nagashima N, Ozawa S, Furuta M, Oi M, Hori Y, Tomita T, Sohma Y, Kanai M. Catalytic photooxygenation degrades brain Aβ in vivo. Science Advances. 7. PMID 33762329 DOI: 10.1126/sciadv.abc9750   
2021 Escorcia W, Tripathi VP, Yuan JP, Forsburg SL. A visual atlas of meiotic protein dynamics in living fission yeast. Open Biology. 11: 200357. PMID 33622106 DOI: 10.1098/rsob.200357   
2021 Lei WL, Qian WP, Sun QY. Critical Functions of PP2A-Like Protein Phosphotases in Regulating Meiotic Progression. Frontiers in Cell and Developmental Biology. 9: 638559. PMID 33718377 DOI: 10.3389/fcell.2021.638559   
2021 Matsuoka T. Early signaling pathways mediating dormant cyst formation in terrestrial unicellular eukaryote Colpoda. Fems Microbiology Letters. PMID 33677557 DOI: 10.1093/femsle/fnab019   
2021 Furtado GV, Yang J, Wu D, Papagiannopoulos CI, Terpstra HM, Kuiper EFE, Krauss S, Zhu WG, Kampinga HH, Bergink S. FOXO1 controls protein synthesis and transcript abundance of mutant polyglutamine proteins, preventing protein aggregation. Human Molecular Genetics. PMID 33822053 DOI: 10.1093/hmg/ddab095   
2021 Liu X, Cao Y, Fu H, Wei J, Chen J, Hu J, Liu B. Proteomics Analysis of Serum from COVID-19 Patients. Acs Omega. 6: 7951-7958. PMID 33778306 DOI: 10.1021/acsomega.1c00616   
2021 Ershov PV, Yablokov E, Zgoda V, Mezentsev Y, Gnedenko O, Kaluzhskiy L, Svirid A, Gilep A, Usanov SA, Ivanov A. A new insight into subinteractomes of functional antagonists: Thromboxane (CYP5A1) and prostacyclin (CYP8A1) synthases. Cell Biology International. PMID 33527589 DOI: 10.1002/cbin.11564   
2021 Goncharuk MV, Lushpa VA, Goncharuk SA, Arseniev AS, Mineev KS. Sampling the cultivation parameter space for the bacterial production of TLR1 intracellular domain reveals the multiple optima. Protein Expression and Purification. 181: 105832. PMID 33516826 DOI: 10.1016/j.pep.2021.105832   
2021 Barros GC, Requião RD, Carneiro RL, Masuda CA, Moreira MH, Rossetto S, Domitrovic T, Palhano FL. Rqc1 and other yeast proteins containing highly positively charged sequences are not targets of the RQC complex. The Journal of Biological Chemistry. 100586. PMID 33774050 DOI: 10.1016/j.jbc.2021.100586   
2021 Liu C, Wu T, Shu X, Li ST, Wang DR, Wang N, Zhou R, Yang H, Jiang H, Hendriks IA, Gong P, Zhang L, Nielsen ML, Li K, Wang L, et al. Identification of Protein Direct Interactome with Genetic Code Expansion and Search Engine OpenUaa. Advanced Biology. 5: e2000308. PMID 33729691 DOI: 10.1002/adbi.202000308   
2021 De Poi SP, Xie J, Mark Smales C, Proud CG. Constitutively active Rheb mutants [T23M] and [E40K] drive increased production and secretion of recombinant protein in Chinese hamster ovary cells. Biotechnology and Bioengineering. PMID 33694218 DOI: 10.1002/bit.27748   
2021 George R, Gsottberger F, Ammon A, Wendland K, Mellenthin L, Mackensen A, Müller F. Triton X-114 and Amine-Based Wash Strategy Reduces Lipopolysaccharides to FDA Limit and Achieves Purer, More Potent Recombinant Immunotoxin. Bioconjugate Chemistry. PMID 33793193 DOI: 10.1021/acs.bioconjchem.1c00013   
2021 Camargo TR, Khelissa S, Chihib NE, Dumas E, Wang J, Valenti WC, Gharsallaoui A. Preparation and Characterization of Microcapsules Containing Antioxidant Fish Protein Hydrolysates: a New Use of Bycatch in Brazil. Marine Biotechnology (New York, N.Y.). PMID 33763809 DOI: 10.1007/s10126-021-10026-7   
2021 Harish M, Venkatraman P. Evolution of biophysical tools for quantitative protein interactions and drug discovery. Emerging Topics in Life Sciences. PMID 33739398 DOI: 10.1042/ETLS20200258   
2021 Abrahão J, Amaro BT, Peres BR, Quel NG, Aragão AZB, Morea EGO, Cano MIN, Houry WA, Ramos CHI. Leishmania major RUVBL1 has a hexameric conformation in solution and in the presence of RUVBL2, forms a heterodimer with ATPase activity. Archives of Biochemistry and Biophysics. 108841. PMID 33775623 DOI: 10.1016/j.abb.2021.108841   
2021 Lavoie-Ouellet C, Clark MÈ, Ruiz J, Saindon AA, Leclerc P. The protein phosphatase with EF-hand domain 1 is a calmodulin-binding protein that interacts with proteins involved in sperm capacitation, binding to the zona pellucida, and motility. Molecular Reproduction and Development. PMID 33783058 DOI: 10.1002/mrd.23467   
2021 Speer SL, Zheng W, Jiang X, Chu IT, Guseman AJ, Liu M, Pielak GJ, Li C. The intracellular environment affects protein-protein interactions. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33836588 DOI: 10.1073/pnas.2019918118   
2021 Bartholow TG, Sztain T, Patel A, Lee DJ, Young MA, Abagyan R, Burkart MD. Elucidation of transient protein-protein interactions within carrier protein-dependent biosynthesis. Communications Biology. 4: 340. PMID 33727677 DOI: 10.1038/s42003-021-01838-3   
2021 Philpott A. The Use of for Cell Biology Applications. Cold Spring Harbor Protocols. PMID 33782096 DOI: 10.1101/pdb.top105528   
2021 Siddiqui MQ, Badmalia MD, Patel TR. Bioinformatic Analysis of Structure and Function of LIM Domains of Human Zyxin Family Proteins. International Journal of Molecular Sciences. 22. PMID 33808029 DOI: 10.3390/ijms22052647   
2021 Siddiqui MQ, Badmalia MD, Patel TR. Bioinformatic Analysis of Structure and Function of LIM Domains of Human Zyxin Family Proteins. International Journal of Molecular Sciences. 22. PMID 33808029 DOI: 10.3390/ijms22052647   
2021 Mohanta TK, Mishra AK, Khan A, Hashem A, Abd-Allah EF, Al-Harrasi A. Virtual 2-D map of the fungal proteome. Scientific Reports. 11: 6676. PMID 33758316 DOI: 10.1038/s41598-021-86201-6   
2021 Song J. ATP energy-independently controls protein homeostasis with unique structure and diverse mechanisms. Protein Science : a Publication of the Protein Society. PMID 33829608 DOI: 10.1002/pro.4079   
2021 Song J. ATP energy-independently controls protein homeostasis with unique structure and diverse mechanisms. Protein Science : a Publication of the Protein Society. PMID 33829608 DOI: 10.1002/pro.4079   
2021 Rayner SL, Cheng F, Hogan AL, Grima N, Yang S, Ke YD, Au CG, Morsch M, De Luca A, Davidson JM, Molloy MP, Shi B, Ittner LM, Blair I, Chung RS, et al. ALS/FTD-causing mutation in cyclin F causes the dysregulation of SFPQ. Human Molecular Genetics. PMID 33729478 DOI: 10.1093/hmg/ddab073   
2021 Waldmann H, Krzyzanowski A, Gasper R, Adihou H, 't Hart P. Biochemical Investigation of the Interaction of pICln, RioK1 and COPR5 with the PRMT5-MEP50 Complex. Chembiochem : a European Journal of Chemical Biology. PMID 33624332 DOI: 10.1002/cbic.202100079   
2021 Yang Y, Wang H, Li W, Wang X, Wei S, Liu Y, Xu Y. Prediction and analysis of multiple protein lysine modified sites based on conditional wasserstein generative adversarial networks. Bmc Bioinformatics. 22: 171. PMID 33789579 DOI: 10.1186/s12859-021-04101-y   
2021 Saito T, Momiyama M, Manri C, Yu H, Choudhury K, Osterfeld SJ, Nakasawa T. Effects of serum matrix on molecular interactions between drugs and target proteins revealed by giant magneto-resistive bio-sensing techniques. Journal of Pharmaceutical and Biomedical Analysis. 198: 114015. PMID 33725588 DOI: 10.1016/j.jpba.2021.114015   
2021 Parray ZA, Ahmad F, Alajmi MF, Hussain A, Hassan MI, Islam A. Interaction of polyethylene glycol with cytochrome c investigated via in vitro and in silico approaches. Scientific Reports. 11: 6475. PMID 33742055 DOI: 10.1038/s41598-021-85792-4   
2021 Parray ZA, Ahmad F, Alajmi MF, Hussain A, Hassan MI, Islam A. Interaction of polyethylene glycol with cytochrome c investigated via in vitro and in silico approaches. Scientific Reports. 11: 6475. PMID 33742055 DOI: 10.1038/s41598-021-85792-4   
2021 Moon JY, Kim HS. α-Syntrophin alleviates ER stress to maintain protein homeostasis during myoblast differentiation. Febs Letters. PMID 33834492 DOI: 10.1002/1873-3468.14088   
2021 Patni K, Agarwal P, Kumar A, Meena LS. Computational evaluation of anticipated PE_PGRS39 protein involvement in host-pathogen interplay and its integration into vaccine development. 3 Biotech. 11: 204. PMID 33824847 DOI: 10.1007/s13205-021-02746-3   
2021 Kowada T, Arai K, Yoshimura A, Matsui T, Kikuchi K, Mizukami S. Optical manipulation of subcellular protein translocation using a photoactivatable covalent labeling system. Angewandte Chemie (International Ed. in English). PMID 33644979 DOI: 10.1002/anie.202016684   
2021 Wang X, Xiang D, Wang Z, Wang Z, Yang X, Yu S, Pang Q, Liu S, Yan L. Label-free quantitative proteomics analysis of Humulus scandens (Lour.) Merr. leaves treated by an odor compound of Periploca sepium Bunge. Ecotoxicology and Environmental Safety. 215: 112131. PMID 33752163 DOI: 10.1016/j.ecoenv.2021.112131