Amy M. Whitaker - Related publications

Affiliations: 
University of Kansas Medical Center, Kansas City, KS, United States 
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Zhao F, Kim W, Kloeber JA, Lou Z. DNA end resection and its role in DNA replication and DSB repair choice in mammalian cells. Experimental & Molecular Medicine. PMID 33122806 DOI: 10.1038/s12276-020-00519-1   
2020 Marshall CJ, Santangelo TJ. Archaeal DNA Repair Mechanisms. Biomolecules. 10. PMID 33113933 DOI: 10.3390/biom10111472   
2020 Chaplin AK, Hardwick SW, Liang S, Kefala Stavridi A, Hnizda A, Cooper LR, De Oliveira TM, Chirgadze DY, Blundell TL. Dimers of DNA-PK create a stage for DNA double-strand break repair. Nature Structural & Molecular Biology. PMID 33077952 DOI: 10.1038/s41594-020-00517-x   
2020 Guan L, Zhao J, Sun W, Deng W, Wang L. -Substituted Thiazole Orange for Selective Fluorescence Detection to G-Quadruplex DNA and Molecular Docking Simulation. Acs Omega. 5: 26056-26062. PMID 33073132 DOI: 10.1021/acsomega.0c03556   
2020 Hammel M, Rosenberg DJ, Bierma J, Hura GL, Lees-Miller SP, Tainer JA. Visualizing functional dynamicity in the DNA-dependent protein kinase holoenzyme DNA-PK complex by integrating SAXS with cryo-EM. Progress in Biophysics and Molecular Biology. PMID 32966823 DOI: 10.1016/j.pbiomolbio.2020.09.003   
2020 Mingard C, Wu J, McKeague M, Sturla SJ. Next-generation DNA damage sequencing. Chemical Society Reviews. PMID 32968744 DOI: 10.1039/d0cs00647e   
2020 Bhatia DD, Wunder C, Johannes L. Self-assembled, programmable DNA nanodevices for biological and biomedical applications. Chembiochem : a European Journal of Chemical Biology. PMID 32961015 DOI: 10.1002/cbic.202000372   
2020 Zhang XX, Brantley SL, Corcelli SA, Tokmakoff A. DNA minor-groove binder Hoechst 33258 destabilizes base-pairing adjacent to its binding site. Communications Biology. 3: 525. PMID 32963293 DOI: 10.1038/s42003-020-01241-4   
2020 Obi I, Rentoft M, Singh V, Jamroskovic J, Chand K, Chorell E, Westerlund F, Sabouri N. Stabilization of G-quadruplex DNA structures in Schizosaccharomyces pombe causes single-strand DNA lesions and impedes DNA replication. Nucleic Acids Research. PMID 33045725 DOI: 10.1093/nar/gkaa820   
2020 Afek A, Shi H, Rangadurai A, Sahay H, Senitzki A, Xhani S, Fang M, Salinas R, Mielko Z, Pufall MA, Poon GMK, Haran TE, Schumacher MA, Al-Hashimi HM, Gordân R. DNA mismatches reveal conformational penalties in protein-DNA recognition. Nature. PMID 33087930 DOI: 10.1038/s41586-020-2843-2   
2020 Rodriguez J, Mosquera J, Learte-Aymamı S, Vázquez ME, Mascareñas JL. Stimuli-Responsive DNA Binding by Synthetic Systems. Accounts of Chemical Research. PMID 32997936 DOI: 10.1021/acs.accounts.0c00415   
2020 Nye TM, Fernandez NL, Simmons LA. A positive perspective on DNA methylation: regulatory functions of DNA methylation outside of host defense in Gram-positive bacteria. Critical Reviews in Biochemistry and Molecular Biology. 1-16. PMID 33059472 DOI: 10.1080/10409238.2020.1828257   
2020 Ouaray Z, Benner SA, Georgiadis MM, Richards NGJ. Building better DNA polymerases: Engineering the replication of expanded genetic alphabets. The Journal of Biological Chemistry. PMID 33004440 DOI: 10.1074/jbc.REV120.013745   
2020 Chan RWY, Serpas L, Ni M, Volpi S, Hiraki LT, Tam LS, Rashidfarrokhi A, Wong PCH, Tam LHP, Wang Y, Jiang P, Cheng ASH, Peng W, Han DSC, Tse PPP, et al. Plasma DNA Profile Associated with DNASE1L3 Gene Mutations: Clinical Observations, Relationships to Nuclease Substrate Preference, and In Vivo Correction. American Journal of Human Genetics. PMID 33022220 DOI: 10.1016/j.ajhg.2020.09.006   
2020 Sallmyr A, Rashid I, Bhandari SK, Naila T, Tomkinson AE. Human DNA ligases in replication and repair. Dna Repair. 93: 102908. PMID 33087274 DOI: 10.1016/j.dnarep.2020.102908   
2020 Sui Z, An R, Komiyama M, Liang X. Stepwise strategy for one-pot synthesis of single-stranded DNA rings from multiple short fragments. Chembiochem : a European Journal of Chemical Biology. PMID 33124728 DOI: 10.1002/cbic.202000738   
2020 Huang Z, Zhao Y, Liu B, Guan S, Liu J. Stronger Adsorption of Phosphorothioate DNA Oligonucleotides on Graphene Oxide by van der Waals Forces. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 33161721 DOI: 10.1021/acs.langmuir.0c02761   
2020 Sparks MA, Burgers PM, Galletto R. Pif1, RPA and FEN1 modulate the ability of DNA polymerase δ to overcome protein barriers during DNA synthesis. The Journal of Biological Chemistry. PMID 32913126 DOI: 10.1074/jbc.RA120.015699   
2020 Sullivan ED, Longley MJ, Copeland WC. Polymerase γ efficiently replicates through many natural template barriers but stalls at the HSP1 quadruplex. The Journal of Biological Chemistry. PMID 33077518 DOI: 10.1074/jbc.RA120.015390   
2020 Li S, Tollefsbol TO. DNA methylation methods: global DNA methylation and methylomic analyses. Methods (San Diego, Calif.). PMID 33039572 DOI: 10.1016/j.ymeth.2020.10.002   
2020 Li C, Li H, Jie G. Click chemistry reaction-triggered DNA walker amplification coupled with hyperbranched DNA nanostructure for versatile fluorescence detection and drug delivery to cancer cells. Mikrochimica Acta. 187: 625. PMID 33095314 DOI: 10.1007/s00604-020-04580-5   
2020 Paul D, Mu H, Tavakoli A, Dai Q, Chen X, Chakraborty S, He C, Ansari A, Broyde S, Min JH. Tethering-facilitated DNA 'opening' and complementary roles of β-hairpin motifs in the Rad4/XPC DNA damage sensor protein. Nucleic Acids Research. PMID 33119737 DOI: 10.1093/nar/gkaa909   
2020 Li Y, Huang Q, Yao G, Wang X, Zhang F, Wang T, Shao C, Zheng X, Jing X, Zhou H. Remodeling Chromatin Induces Z-DNA Conformation Detected through Fourier Transform Infrared Spectroscopy. Analytical Chemistry. PMID 33085464 DOI: 10.1021/acs.analchem.0c02432   
2020 Whitaker AM, Freudenthal BD. History of DNA polymerase β X-ray crystallography. Dna Repair. 93: 102928. PMID 33087265 DOI: 10.1016/j.dnarep.2020.102928   
2020 Tong ZB, Ai HS, Li JB. The Mechanism of Chromatin Remodeler SMARCAD1/Fun30 in Response to DNA Damage. Frontiers in Cell and Developmental Biology. 8: 560098. PMID 33102471 DOI: 10.3389/fcell.2020.560098   
2020 Wan Y, Wang H, Ji J, Kang K, Yang M, Huang Y, Su Y, Ma K, Zhu L, Deng S. Zippering DNA Tetrahedral Hyperlink for Ultrasensitive Electrochemical MicroRNA Detection. Analytical Chemistry. PMID 33119272 DOI: 10.1021/acs.analchem.0c03553   
2020 Sharma D, Singh A, Pathak M, Kaur L, Kumar V, Roy BG, Ojha H. DNA binding and antiradical potential of ethyl pyruvate: Key to the DNA radioprotection. Chemico-Biological Interactions. 109313. PMID 33171137 DOI: 10.1016/j.cbi.2020.109313   
2020 Patel M, Patel D, Datta S, Singh U. An immunochemistry-based screen for chemical inhibitors of DNA-protein interactions and its application to human CGGBP1. Bmc Cancer. 20: 1016. PMID 33081720 DOI: 10.1186/s12885-020-07526-5   
2020 Medová M, Medo M, Hovhannisyan L, Muñoz-Maldonado C, Aebersold DM, Zimmer Y. DNA-PK in human malignant disorders: Mechanisms and implications for pharmacological interventions. Pharmacology & Therapeutics. 215: 107617. PMID 32610116 DOI: 10.1016/j.pharmthera.2020.107617   
2020 Copp W, Wilds CJ. O -Alkylguanine DNA Alkyltransferase Mediated Disassembly of a DNA Tetrahedron. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 32543755 DOI: 10.1002/chem.202002565   
2020 Heintz N, Gong S. Growth of and Preparation of DNA. Cold Spring Harbor Protocols. 2020: pdb.prot098145. PMID 33004551 DOI: 10.1101/pdb.prot098145   
2020 Kong M, Beckwitt EC, Van Houten B. Dynamic action of DNA repair proteins as revealed by single molecule techniques: Seeing is believing. Dna Repair. 93: 102909. PMID 33087275 DOI: 10.1016/j.dnarep.2020.102909   
2020 Lv H, Chen A, Cheng W, Kong L, Zhao M, Ding S, Ju H, Cheng W. Efficient DNA Walker Guided with Well-Regulated Interfacial Tracks for Ultrasensitive Electrochemiluminescence Biosensing. Analytical Chemistry. PMID 33170673 DOI: 10.1021/acs.analchem.0c03893   
2020 Kaminski AM, Bebenek K, Pedersen LC, Kunkel TA. DNA polymerase mu: An inflexible scaffold for substrate flexibility. Dna Repair. 93: 102932. PMID 33087269 DOI: 10.1016/j.dnarep.2020.102932   
2020 Zilio N, Ulrich HD. Exploring the SSBreakome: genome-wide mapping of DNA single-strand breaks by next-generation sequencing. The Febs Journal. PMID 32965079 DOI: 10.1111/febs.15568   
2020 Dhasmana A, Dhasmana A, H HY, Farasani A, Habibullah M, Alshammary FL, Khan S, Haque S, Lohani M. Tobacco Smoke Carcinogens Induce DNA Repair Machinery Function Loss: Protection by Carbon Nanotubes. Asian Pacific Journal of Cancer Prevention : Apjcp. 21: 3099-3108. PMID 33112573 DOI: 10.31557/APJCP.2020.21.10.3099   
2020 Bignon E, Claerbout VEP, Jiang T, Morell C, Gillet N, Dumont E. Nucleosomal embedding reshapes the dynamics of abasic sites. Scientific Reports. 10: 17314. PMID 33057206 DOI: 10.1038/s41598-020-73997-y   
2020 Buckley RJ, Kramm K, Cooper CDO, Grohmann D, Bolt EL. Mechanistic insights into Lhr helicase function in DNA repair. The Biochemical Journal. 477: 2935-2947. PMID 32706021 DOI: 10.1042/BCJ20200379   
2020 De Riso G, Fiorillo DFG, Fierro A, Cuomo M, Chiariotti L, Miele G, Cocozza S. Modeling DNA Methylation Profiles through a Dynamic Equilibrium between Methylation and Demethylation. Biomolecules. 10. PMID 32899254 DOI: 10.3390/biom10091271   
2020 He Y, Wang Y, Qin C, Xu Y, Cheng K, Xu H, Tian B, Zhao Y, Wang L, Hua Y. Structural and Functional Characterization of a Unique AP Endonuclease From . Frontiers in Microbiology. 11: 1178. PMID 33117296 DOI: 10.3389/fmicb.2020.01178   
2020 Liu N, Zhang X, Tang X, Liu Y, Huang D, Xiao X. A double-stranded DNA catalyzed strand displacement system for detection of small genetic variations. Chemical Communications (Cambridge, England). PMID 33140767 DOI: 10.1039/d0cc06216b   
2020 Lees-Miller JP, Cobban A, Katsonis P, Bacolla A, Tsutakawa SE, Hammel M, Meek K, Anderson DW, Lichtarge O, Tainer JA, Lees-Miller SP. Uncovering DNA-PKcs ancient phylogeny, unique sequence motifs and insights for human disease. Progress in Biophysics and Molecular Biology. PMID 33035590 DOI: 10.1016/j.pbiomolbio.2020.09.010   
2020 Alhmoud JF, Mustafa AG, Malki MI. Targeting DNA Repair Pathways in Hematological Malignancies. International Journal of Molecular Sciences. 21. PMID 33036137 DOI: 10.3390/ijms21197365   
2020 Miglani K, Kumar S, Yadav A, Aggarwal N, Gupta R. OGG1 DNA Repair Gene Polymorphism As a Biomarker of Oxidative and Genotoxic DNA Damage. Iranian Biomedical Journal. 25: 47-53. PMID 33129239 DOI: 10.29252/ibj.25.1.47   
2020 Wu R, Gao S, Du T, Cai K, Cheng X, Fan J, Feng J, Shaginian A, Li J, Wan J, Liu G. Exploring Aldol Reactions on DNA and Applications to Produce Diverse Structures: An Example of Expanding Chemical Space of DNA-Encoded Compounds by Diversity-Oriented Synthesis. Chemistry, An Asian Journal. PMID 33119184 DOI: 10.1002/asia.202001105   
2020 Wang D, Yu L, Ji B, Chang S, Song J, Ke Y. Programming the Curvatures in Reconfigurable DNA Domino Origami by Using Asymmetric Units. Nano Letters. PMID 33095024 DOI: 10.1021/acs.nanolett.0c03348   
2020 Desai PR, Brahmachari S, Marko JF, Das S, Neuman KC. Coarse-grained modelling of DNA plectoneme pinning in the presence of base-pair mismatches. Nucleic Acids Research. PMID 33045724 DOI: 10.1093/nar/gkaa836   
2020 Ramakrishnan S, Subramaniam S, Kielar C, Grundmeier G, Stewart AF, Keller A. Protein-Assisted Room-Temperature Assembly of Rigid, Immobile Holliday Junctions and Hierarchical DNA Nanostructures. Molecules (Basel, Switzerland). 25. PMID 33153073 DOI: 10.3390/molecules25215099   
2020 Furtwängler A, Neukamm J, Böhme L, Reiter E, Vollstedt M, Arora N, Singh P, Cole ST, Knauf S, Calvignac-Spencer S, Krause-Kyora B, Krause J, Schuenemann VJ, Herbig A. Comparison of target enrichment strategies for ancient pathogen DNA. Biotechniques. PMID 33135465 DOI: 10.2144/btn-2020-0100   
2020 Flood DT, Knouse KW, Vantourout JC, Kitamura S, Sanchez BB, Sturgell EJ, Chen JS, Wolan DW, Baran PS, Dawson PE. Synthetic Elaboration of Native DNA by RASS (SENDR). Acs Central Science. 6: 1789-1799. PMID 33145415 DOI: 10.1021/acscentsci.0c00680