Francesca Cargnin, Ph.D. - Related publications

Oregon Health and Science University, Portland, OR 
RNA/proteins interactions in CNS/PNS - Neuronal Projections
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Serrano-Saiz E, Gulez B, Pereira L, Gendrel M, Kerk SY, Vidal B, Feng W, Wang C, Kratsios P, Rand JB, Hobert O. Modular Organization of -Regulatory Control Information of Neurotransmitter Pathway Genes in . Genetics. PMID 32444379 DOI: 10.1534/genetics.120.303206   
2020 Bieder A, Yoshihara M, Katayama S, Krjutškov K, Falk A, Kere J, Tapia-Páez I. Dyslexia Candidate Gene and Ciliary Gene Expression Dynamics During Human Neuronal Differentiation. Molecular Neurobiology. PMID 32445086 DOI: 10.1007/s12035-020-01905-6   
2020 Simon R, Wiegreffe C, Britsch S. Bcl11 Transcription Factors Regulate Cortical Development and Function. Frontiers in Molecular Neuroscience. 13: 51. PMID 32322190 DOI: 10.3389/fnmol.2020.00051   
2020 Heinz DA, Bloodgood BL. Mechanisms that communicate features of neuronal activity to the genome. Current Opinion in Neurobiology. 63: 131-136. PMID 32416470 DOI: 10.1016/j.conb.2020.03.002   
2020 Borriello G, Russo V, Paradiso R, Riccardi MG, Criscuolo D, Verde G, Marasco R, Pedone PV, Galiero G, Baglivo I. Different Impacts of MucR Binding to the and Promoters on Gene Expression in 2308. Biomolecules. 10. PMID 32438765 DOI: 10.3390/biom10050788   
2020 Arora K, Belcaid M, Lantz MJ, Taketa R, Nichols RA. Transcriptome Profile of Nicotinic Receptor-Linked Sensitization of Beta Amyloid Neurotoxicity. Scientific Reports. 10: 5696. PMID 32231242 DOI: 10.1038/s41598-020-62726-0   
2020 Christensen EL, Beasley A, Radchuk J, Mielko ZE, Preston E, Stuckett S, Murray JI, Hudson ML. /neurogenin Activates Transcription of Multiple Terminal Selector Transcription Factors in the Nervous System. G3 (Bethesda, Md.). PMID 32273286 DOI: 10.1534/g3.120.401126   
2020 Chen LF, Lyons MR, Liu F, Green MV, Hedrick NG, Williams AB, Narayanan A, Yasuda R, West AE. The NMDA receptor subunit GluN3A regulates synaptic activity-induced and myocyte enhancer factor 2C (MEF2C)-dependent transcription. The Journal of Biological Chemistry. PMID 32393578 DOI: 10.1074/jbc.RA119.010266   
2020 Rambout X, Cho H, Maquat LE. Transcriptional Coactivator PGC-1α Binding to Newly Synthesized RNA via CBP80: A Nexus for Co- and Posttranscriptional Gene Regulation. Cold Spring Harbor Symposia On Quantitative Biology. PMID 32295928 DOI: 10.1101/sqb.2019.84.040212   
2020 Yu B, Wang Y, Zhou H, Li P, Liu C, Chen S, Peng Y, Zhang Y, Teng S. Genome-wide binding analysis reveals that ANAC060 directly represses sugar-induced ABI5 transcription in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. PMID 32314488 DOI: 10.1111/tpj.14777   
2020 Luppino JM, Joyce EF. Single cell analysis pushes the boundaries of TAD formation and function. Current Opinion in Genetics & Development. 61: 25-31. PMID 32302920 DOI: 10.1016/j.gde.2020.03.005   
2020 Wu X, Yang Y, Zhong C, Guo Y, Wei T, Li S, Lin H, Liu X. Integration of ATAC-seq and RNA-seq Unravels Chromatin Accessibility during Sex Reversal in Orange-Spotted Grouper (). International Journal of Molecular Sciences. 21. PMID 32316525 DOI: 10.3390/ijms21082800   
2020 Yin L, Banerjee S, Fan J, He J, Lu X, Xie H. Epigenetic regulation of neuronal cell specification inferred with single cell "Omics" data. Computational and Structural Biotechnology Journal. 18: 942-952. PMID 32368329 DOI: 10.1016/j.csbj.2020.04.007   
2020 Carnesecchi J, Sigismondo G, Domsch K, Baader CEP, Rafiee MR, Krijgsveld J, Lohmann I. Multi-level and lineage-specific interactomes of the Hox transcription factor Ubx contribute to its functional specificity. Nature Communications. 11: 1388. PMID 32170121 DOI: 10.1038/s41467-020-15223-x   
2020 Bosch PJ, Peek SL, Smolikove S, Weiner JA. Akirin proteins in development and disease: critical roles and mechanisms of action. Cellular and Molecular Life Sciences : Cmls. PMID 32361777 DOI: 10.1007/s00018-020-03531-w   
2020 Irizarry J, McGehee J, Kim G, Stein D, Stathopoulos A. Twist-dependent ratchet functioning downstream from Dorsal revealed using a light-inducible degron. Genes & Development. PMID 32467225 DOI: 10.1101/gad.338194.120   
2020 Cai H, Li M, Jian W, Song C, Huang Y, Lan X, Lei C, Chen H. A novel lncRNA BADLNCR1 inhibits bovine adipogenesis by repressing GLRX5 expression. Journal of Cellular and Molecular Medicine. PMID 32449295 DOI: 10.1111/jcmm.15181   
2020 Yang J, Xu D, Yu W, Hao R, Wei J. Regulation of aureofuscin production by the PAS-LuxR family regulator AurJ3M. Enzyme and Microbial Technology. 137: 109532. PMID 32423669 DOI: 10.1016/j.enzmictec.2020.109532   
2020 Feng W, Chen S, Wang J, Wang X, Chen H, Ning W, Zhang Y. DHX33 recruits Gadd45a to cause DNA demethylation and regulate a subset of gene transcription. Molecular and Cellular Biology. PMID 32312884 DOI: 10.1128/MCB.00460-19   
2020 Berenguer M, Meyer KF, Yin J, Duester G. Discovery of genes required for body axis and limb formation by global identification of retinoic acid-regulated epigenetic marks. Plos Biology. 18: e3000719. PMID 32421711 DOI: 10.1371/journal.pbio.3000719   
2020 Powell SK, Samulski RJ, McCown TJ. AAV Capsid-Promoter Interactions Determine CNS Cell-Selective Gene Expression In Vivo. Molecular Therapy : the Journal of the American Society of Gene Therapy. PMID 32213322 DOI: 10.1016/j.ymthe.2020.03.007   
2020 Chaparian RR, Ball AS, van Kessel JC. Hierarchical transcriptional control of the LuxR quorum-sensing regulon of . Journal of Bacteriology. PMID 32366592 DOI: 10.1128/JB.00047-20   
2020 Nebeluk N, Foster TP. Design, Validation and Evaluation of a SYBR Green-based Quantitative PCR Array for Comprehensive Analysis of Adenovirus Type 5 Transcriptional Patterns. Journal of Virological Methods. 113880. PMID 32413477 DOI: 10.1016/j.jviromet.2020.113880   
2020 Wu Y, Jia Z, Ge X, Wu Q. Three-dimensional genome architectural CCCTC-binding factor makes choice in duplicated enhancers at Pcdhα locus. Science China. Life Sciences. PMID 32249388 DOI: 10.1007/s11427-019-1598-4   
2020 Liu L, He D, Wang Y, Sheng M. Integrated analysis of DNA methylation and transcriptome profiling of polycystic ovary syndrome. Molecular Medicine Reports. PMID 32323770 DOI: 10.3892/mmr.2020.11005   
2020 Vior NM, Cea-Torrescassana E, Eyles TH, Chandra G, Truman AW. Regulation of Bottromycin Biosynthesis Involves an Internal Transcriptional Start Site and a Cluster-Situated Modulator. Frontiers in Microbiology. 11: 495. PMID 32273872 DOI: 10.3389/fmicb.2020.00495   
2020 Newton AH, Pask AJ. CHD9 upregulates RUNX2 and has a potential role in skeletal evolution. Bmc Molecular and Cell Biology. 21: 27. PMID 32295522 DOI: 10.1186/s12860-020-00270-5   
2020 Paraiso KD, Cho JS, Yong J, Cho KWY. Early Xenopus gene regulatory programs, chromatin states, and the role of maternal transcription factors. Current Topics in Developmental Biology. 139: 35-60. PMID 32450966 DOI: 10.1016/bs.ctdb.2020.02.009   
2020 McGrath-Morrow SA, Ndeh R, Helmin KA, Khuder B, Rothblum-Oviatt C, Collaco JM, Wright J, Reyfman PA, Lederman HM, Singer BD. DNA methylation and gene expression signatures are associated with ataxia-telangiectasia phenotype. Scientific Reports. 10: 7479. PMID 32366930 DOI: 10.1038/s41598-020-64514-2   
2020 Mouawad R, Himadewi P, Kadiyala D, Arnosti DN. Selective repression of the Drosophila cyclin B promoter by retinoblastoma and E2F proteins. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 1863: 194549. PMID 32275964 DOI: 10.1016/j.bbagrm.2020.194549   
2020 Li L, Huang K, Zhao H, Chen B, Ye Q, Yue J. CDK1-PLK1/SGOL2/ANLN pathway mediating abnormal cell division in cell cycle may be a critical process in hepatocellular carcinoma. Cell Cycle (Georgetown, Tex.). 1-17. PMID 32275843 DOI: 10.1080/15384101.2020.1749471   
2020 Schuh L, Saint-Antoine M, Sanford EM, Emert BL, Singh A, Marr C, Raj A, Goyal Y. Gene Networks with Transcriptional Bursting Recapitulate Rare Transient Coordinated High Expression States in Cancer. Cell Systems. 10: 363-378.e12. PMID 32325034 DOI: 10.1016/j.cels.2020.03.004   
2020 Xiao B, Wang G, Li W. Weighted gene correlation network analysis reveals novel biomarkers associated with mesenchymal stromal cell differentiation in early phase. Peerj. 8: e8907. PMID 32280568 DOI: 10.7717/peerj.8907   
2020 Saito S, Suzuki T. How do signaling and transcription factors regulate both axis elongation and Hox gene expression along the anteroposterior axis? Development, Growth & Differentiation. PMID 32446291 DOI: 10.1111/dgd.12682   
2020 Yang X, Deng S, Wei X, Yang J, Zhao Q, Yin C, Du T, Guo Z, Xia J, Yang Z, Xie W, Wang S, Wu Q, Yang F, Zhou X, et al. MAPK-directed activation of the whitefly transcription factor leads to P450-mediated imidacloprid resistance. Proceedings of the National Academy of Sciences of the United States of America. PMID 32327610 DOI: 10.1073/pnas.1913603117   
2020 Zhu ZD, Hu QH, Tong CM, Yang HG, Zheng SC, Feng QL, Deng HM. Transcriptomic analysis reveals the regulation network of BmKrüppel homolog 1 in the oocyte development of Bombyx mori. Insect Science. PMID 32283000 DOI: 10.1111/1744-7917.12747   
2020 Smith J, Sen S, Weeks RJ, Eccles MR, Chatterjee A. Promoter DNA Hypermethylation and Paradoxical Gene Activation. Trends in Cancer. 6: 392-406. PMID 32348735 DOI: 10.1016/j.trecan.2020.02.007   
2020 Romano O, Petiti L, Felix T, Meneghini V, Portafax M, Antoniani C, Amendola M, Bicciato S, Peano C, Miccio A. GATA Factor-Mediated Gene Regulation in Human Erythropoiesis. Iscience. 23: 101018. PMID 32283524 DOI: 10.1016/j.isci.2020.101018   
2020 Myung SH, Park J, Han JH, Kim TH. Development of the mammalian expression vector system that can be induced by IPTG and/or lactose. Journal of Microbiology and Biotechnology. PMID 32423185 DOI: 10.4014/jmb.2003.03030   
2020 Li Y, Schaefke B, Zou X, Zhang M, Heyd F, Sun W, Zhang B, Li G, Liang W, He Y, Zhou J, Li Y, Fang L, Hu Y, Chen W. Pan-tissue analysis of allelic alternative polyadenylation suggests widespread functional regulation. Molecular Systems Biology. 16: e9367. PMID 32311237 DOI: 10.15252/msb.20199367   
2020 Kaushik M, Rai S, Venkadesan S, Sinha SK, Mohan S, Mandal PK. Transcriptome Analysis Reveals Important Candidate Genes Related to Nutrient Reservoir, Carbohydrate Metabolism, and Defence Proteins during Grain Development of Hexaploid Bread Wheat and Its Diploid Progenitors. Genes. 11. PMID 32380773 DOI: 10.3390/genes11050509   
2020 Oliveira D, Morales-Vicente DA, Amaral MS, Luz L, Sertié AL, Leite FS, Navarro C, Kaid C, Esposito J, Goulart E, Caires L, Alves LM, Melo US, Figueiredo T, Okamoto OK, et al. Different gene expression profiles in iPSC-derived motor neurons from ALS8 patients with variable clinical courses suggest mitigating pathways for neurodegeneration. Human Molecular Genetics. PMID 32280986 DOI: 10.1093/hmg/ddaa069   
2020 Rebollar-Flores JE, Medina-Aparicio L, Osio-Becerro VE, Villarreal JM, Mayo S, Mendoza BD, Rodríguez-Gutierrez S, Olvera L, Dávila S, Encarnación S, Martínez-Batallar G, Calva E, Hernández-Lucas I. The serovar Typhi gene encodes two proteins whose transcriptional expression is up-regulated by alkaline pH and repressed at their promoters and coding regions by H-NS and Lrp. Journal of Bacteriology. PMID 32284321 DOI: 10.1128/JB.00783-19   
2020 Ruben S, Garbe E, Mogavero S, Albrecht-Eckardt D, Hellwig D, Häder A, Krüger T, Gerth K, Jacobsen ID, Elshafee O, Brunke S, Hünniger K, Kniemeyer O, Brakhage AA, Morschhäuser J, et al. Ahr1 and Tup1 Contribute to the Transcriptional Control of Virulence-Associated Genes in Candida albicans. Mbio. 11. PMID 32345638 DOI: 10.1128/mBio.00206-20   
2020 Di Marzo M, Roig-Villanova I, Zanchetti E, Caselli F, Gregis V, Bardetti P, Chiara M, Guazzotti A, Caporali E, Mendes MA, Colombo L, Kater MM. MADS-Box and bHLH Transcription Factors Coordinate Transmitting Tract Development in . Frontiers in Plant Science. 11: 526. PMID 32435255 DOI: 10.3389/fpls.2020.00526   
2020 Ducat A, Couderc B, Bouter A, Biquard L, Aouache R, Passet B, Doridot L, Cohen MB, Ribaux P, Apicella C, Gaillard I, Palfray S, Chen Y, Vargas A, Julé A, et al. Molecular Mechanisms of Trophoblast Dysfunction Mediated by Imbalance between STOX1 Isoforms. Iscience. 23: 101086. PMID 32371375 DOI: 10.1016/j.isci.2020.101086   
2020 Tietz KT, Gallagher TL, Mannings MC, Morrow ZT, Derr NL, Amacher SL. Pumilio response and AU-rich elements drive rapid decay of Pnrc2-regulated cyclic gene transcripts. Developmental Biology. PMID 32246943 DOI: 10.1016/j.ydbio.2020.03.017   
2020 Yarrington RM, Yu Y, Yan C, Bai L, Stillman DJ. Independent Recruitment of the Mediator Tail Module to the Promoter Suggests Mediator Core Limits Coactivator Recruitment in . Genetics. PMID 32327563 DOI: 10.1534/genetics.120.303254   
2020 Xu X, Yang J, Harvey-Samuel T, Huang Y, Asad M, Chen W, He W, Yang G, Alphey L, You M. Identification and characterization of the vasa gene in the diamondback moth, Plutella xylostella. Insect Biochemistry and Molecular Biology. 103371. PMID 32283279 DOI: 10.1016/j.ibmb.2020.103371   
2020 Yi M, Tan Y, Wang L, Cai J, Li X, Zeng Z, Xiong W, Li G, Li X, Tan P, Xiang B. TP63 links chromatin remodeling and enhancer reprogramming to epidermal differentiation and squamous cell carcinoma development. Cellular and Molecular Life Sciences : Cmls. PMID 32447427 DOI: 10.1007/s00018-020-03539-2