| Year |
Citation |
Score |
| 2023 |
Khamwachirapithak P, Guillaume-Schoepfer D, Chansongkrow P, Teichmann SA, Wigge PA, Charoenswan V. Characterizing Different Modes of Interplay between Rap1 and H3 using Inducible H3-depletion Yeast. Journal of Molecular Biology. 168355. PMID 37935256 DOI: 10.1016/j.jmb.2023.168355 |
0.618 |
|
| 2023 |
Arora JK, Opasawatchai A, Teichmann SA, Matangkasombut P, Charoensawan V. Computational workflow for investigating highly variable genes in single-cell RNA-seq across multiple time points and cell types. Star Protocols. 4: 102387. PMID 37379219 DOI: 10.1016/j.xpro.2023.102387 |
0.663 |
|
| 2022 |
Arora JK, Opasawatchai A, Poonpanichakul T, Jiravejchakul N, Sungnak W, Matangkasombut O, Teichmann SA, Matangkasombut P, Charoensawan V. Single-cell temporal analysis of natural dengue infection reveals skin-homing lymphocyte expansion one day before defervescence. Iscience. 25: 104034. PMID 35345453 DOI: 10.1016/j.isci.2022.104034 |
0.634 |
|
| 2020 |
Jiang J, Faiz A, Berg M, Carpaij OA, Vermeulen CJ, Brouwer S, Hesse L, Teichmann SA, Ten Hacken N, Timens W, van den Berge M, Nawijn MC. Gene signatures from scRNA-seq accurately quantify mast cells in biopsies in asthma. Clinical and Experimental Allergy : Journal of the British Society For Allergy and Clinical Immunology. PMID 32935368 DOI: 10.1111/Cea.13732 |
0.341 |
|
| 2020 |
Raddi G, Barletta ABF, Efremova M, Ramirez JL, Cantera R, Teichmann SA, Barillas-Mury C, Billker O. Mosquito cellular immunity at single-cell resolution. Science (New York, N.Y.). 369: 1128-1132. PMID 32855340 DOI: 10.1126/Science.Abc0322 |
0.35 |
|
| 2020 |
Miao Z, Moreno P, Huang N, Papatheodorou I, Brazma A, Teichmann SA. Putative cell type discovery from single-cell gene expression data. Nature Methods. PMID 32424270 DOI: 10.1038/S41592-020-0825-9 |
0.348 |
|
| 2020 |
Wilbrey-Clark A, Roberts K, Teichmann SA. Cell Atlas technologies and insights into tissue architecture. The Biochemical Journal. 477: 1427-1442. PMID 32339226 DOI: 10.1042/Bcj20190341 |
0.366 |
|
| 2020 |
Lavaert M, Liang KL, Vandamme N, Park JE, Roels J, Kowalczyk MS, Li B, Ashenberg O, Tabaka M, Dionne D, Tickle TL, Slyper M, Rozenblatt-Rosen O, Vandekerckhove B, Leclercq G, ... ... Teichmann SA, et al. Integrated scRNA-Seq Identifies Human Postnatal Thymus Seeding Progenitors and Regulatory Dynamics of Differentiating Immature Thymocytes. Immunity. PMID 32304633 DOI: 10.1016/J.Immuni.2020.03.019 |
0.318 |
|
| 2020 |
McCarthy DJ, Rostom R, Huang Y, Kunz DJ, Danecek P, Bonder MJ, Hagai T, Lyu R, Wang W, Gaffney DJ, Simons BD, Stegle O, Teichmann SA. Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes. Nature Methods. PMID 32203388 DOI: 10.1038/S41592-020-0766-3 |
0.377 |
|
| 2020 |
Efremova M, Vento-Tormo M, Teichmann SA, Vento-Tormo R. CellPhoneDB: inferring cell-cell communication from combined expression of multi-subunit ligand-receptor complexes. Nature Protocols. PMID 32103204 DOI: 10.1038/S41596-020-0292-X |
0.355 |
|
| 2020 |
Park JE, Botting RA, Domínguez Conde C, Popescu DM, Lavaert M, Kunz DJ, Goh I, Stephenson E, Ragazzini R, Tuck E, Wilbrey-Clark A, Roberts K, Kedlian VR, Ferdinand JR, He X, ... ... Teichmann SA, et al. A cell atlas of human thymic development defines T cell repertoire formation. Science (New York, N.Y.). 367. PMID 32079746 DOI: 10.1126/Science.Aay3224 |
0.322 |
|
| 2020 |
Efremova M, Vento-Tormo R, Park JE, Teichmann SA, James KR. Immunology in the Era of Single-Cell Technologies. Annual Review of Immunology. PMID 32075461 DOI: 10.1146/Annurev-Immunol-090419-020340 |
0.31 |
|
| 2020 |
Oatley M, Bölükbası ÖV, Svensson V, Shvartsman M, Ganter K, Zirngibl K, Pavlovich PV, Milchevskaya V, Foteva V, Natarajan KN, Baying B, Benes V, Patil KR, Teichmann SA, Lancrin C. Single-cell transcriptomics identifies CD44 as a marker and regulator of endothelial to haematopoietic transition. Nature Communications. 11: 586. PMID 31996681 DOI: 10.1038/S41467-019-14171-5 |
0.309 |
|
| 2020 |
Efremova M, Teichmann SA. Computational methods for single-cell omics across modalities. Nature Methods. 17: 14-17. PMID 31907463 DOI: 10.1038/S41592-019-0692-4 |
0.351 |
|
| 2019 |
Elmentaite R, Teichmann SA, Madissoon E. Studying immune to non-immune cell cross-talk using single-cell technologies Current Opinion in Systems Biology. 18: 87-94. PMID 32984660 DOI: 10.1016/J.Coisb.2019.10.005 |
0.302 |
|
| 2019 |
Domínguez Conde C, Teichmann SA. Deciphering immunity at high plexity and resolution. Nature Reviews. Immunology. PMID 31797907 DOI: 10.1038/S41577-019-0254-0 |
0.323 |
|
| 2019 |
Papatheodorou I, Moreno P, Manning J, Fuentes AM, George N, Fexova S, Fonseca NA, Füllgrabe A, Green M, Huang N, Huerta L, Iqbal H, Jianu M, Mohammed S, Zhao L, ... ... Teichmann S, et al. Expression Atlas update: from tissues to single cells. Nucleic Acids Research. PMID 31665515 DOI: 10.1093/Nar/Gkz947 |
0.353 |
|
| 2019 |
Gomes T, Teichmann SA, Talavera-López C. Immunology Driven by Large-Scale Single-Cell Sequencing. Trends in Immunology. PMID 31645299 DOI: 10.1016/J.It.2019.09.004 |
0.359 |
|
| 2019 |
Gao X, Nowak-Imialek M, Chen X, Chen D, Herrmann D, Ruan D, Chen ACH, Eckersley-Maslin MA, Ahmad S, Lee YL, Kobayashi T, Ryan D, Zhong J, Zhu J, Wu J, ... ... Teichmann SA, et al. Establishment of porcine and human expanded potential stem cells. Nature Cell Biology. 21: 687-699. PMID 31160711 DOI: 10.1038/S41556-019-0333-2 |
0.306 |
|
| 2019 |
Walker JA, Clark PA, Crisp A, Barlow JL, Szeto A, Ferreira ACF, Rana BMJ, Jolin HE, Rodriguez-Rodriguez N, Sivasubramaniam M, Pannell R, Cruickshank J, Daly M, Haim-Vilmovsky L, Teichmann SA, et al. Polychromic Reporter Mice Reveal Unappreciated Innate Lymphoid Cell Progenitor Heterogeneity and Elusive ILC3 Progenitors in Bone Marrow. Immunity. PMID 31128961 DOI: 10.1016/J.Immuni.2019.05.002 |
0.314 |
|
| 2019 |
Dhillon P, Teichmann SA. In conversation with Sarah Teichmann. The Febs Journal. 286: 1445-1450. PMID 31012289 DOI: 10.1111/Febs.14806 |
0.383 |
|
| 2019 |
Natarajan KN, Miao Z, Jiang M, Huang X, Zhou H, Xie J, Wang C, Qin S, Zhao Z, Wu L, Yang N, Li B, Hou Y, Liu S, Teichmann SA. Comparative analysis of sequencing technologies for single-cell transcriptomics. Genome Biology. 20: 70. PMID 30961669 DOI: 10.1186/S13059-019-1676-5 |
0.343 |
|
| 2019 |
Taylor DM, Aronow BJ, Tan K, Bernt K, Salomonis N, Greene CS, Frolova A, Henrickson SE, Wells A, Pei L, Jaiswal JK, Whitsett J, Hamilton KE, MacParland SA, Kelsen J, ... ... Teichmann S, et al. The Pediatric Cell Atlas: Defining the Growth Phase of Human Development at Single-Cell Resolution. Developmental Cell. PMID 30930166 DOI: 10.1016/J.Devcel.2019.03.001 |
0.341 |
|
| 2019 |
Miragaia RJ, Gomes T, Chomka A, Jardine L, Riedel A, Hegazy AN, Whibley N, Tucci A, Chen X, Lindeman I, Emerton G, Krausgruber T, Shields J, Haniffa M, Powrie F, ... Teichmann SA, et al. Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue Adaptation. Immunity. PMID 30737144 DOI: 10.1016/J.Immuni.2019.01.001 |
0.327 |
|
| 2019 |
Henriksson J, Chen X, Gomes T, Ullah U, Meyer KB, Miragaia R, Duddy G, Pramanik J, Yusa K, Lahesmaa R, Teichmann SA. Genome-wide CRISPR Screens in T Helper Cells Reveal Pervasive Crosstalk between Activation and Differentiation. Cell. PMID 30639098 DOI: 10.1016/J.Cell.2018.11.044 |
0.374 |
|
| 2019 |
Büttner M, Miao Z, Wolf FA, Teichmann SA, Theis FJ. A test metric for assessing single-cell RNA-seq batch correction. Nature Methods. 16: 43-49. PMID 30573817 DOI: 10.1038/S41592-018-0254-1 |
0.313 |
|
| 2018 |
Chen X, Miragaia RJ, Natarajan KN, Teichmann SA. A rapid and robust method for single cell chromatin accessibility profiling. Nature Communications. 9: 5345. PMID 30559361 DOI: 10.1038/S41467-018-07771-0 |
0.374 |
|
| 2018 |
Massaia A, Chaves P, Samari S, Miragaia RJ, Meyer K, Teichmann SA, Noseda M. Single Cell Gene Expression to Understand the Dynamic Architecture of the Heart. Frontiers in Cardiovascular Medicine. 5: 167. PMID 30525044 DOI: 10.3389/Fcvm.2018.00167 |
0.389 |
|
| 2018 |
Jia G, Preussner J, Chen X, Guenther S, Yuan X, Yekelchyk M, Kuenne C, Looso M, Zhou Y, Teichmann S, Braun T. Single cell RNA-seq and ATAC-seq analysis of cardiac progenitor cell transition states and lineage settlement. Nature Communications. 9: 4877. PMID 30451828 DOI: 10.1038/S41467-018-07307-6 |
0.35 |
|
| 2018 |
Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E, Polański K, Goncalves A, Gardner L, Holmqvist S, Henriksson J, Zou A, Sharkey AM, ... ... Teichmann SA, et al. Single-cell reconstruction of the early maternal-fetal interface in humans. Nature. 563: 347-353. PMID 30429548 DOI: 10.1038/S41586-018-0698-6 |
0.306 |
|
| 2018 |
Hagai T, Chen X, Miragaia RJ, Rostom R, Gomes T, Kunowska N, Henriksson J, Park JE, Proserpio V, Donati G, Bossini-Castillo L, Vieira Braga FA, Naamati G, Fletcher J, Stephenson E, ... ... Teichmann SA, et al. Gene expression variability across cells and species shapes innate immunity. Nature. PMID 30356220 DOI: 10.1038/S41586-018-0657-2 |
0.319 |
|
| 2018 |
Pramanik J, Chen X, Kar G, Henriksson J, Gomes T, Park JE, Natarajan K, Meyer KB, Miao Z, McKenzie ANJ, Mahata B, Teichmann SA. Genome-wide analyses reveal the IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation. Genome Medicine. 10: 76. PMID 30355343 DOI: 10.1186/S13073-018-0589-3 |
0.341 |
|
| 2018 |
Marsh JA, Teichmann SA. Editorial overview: Sequences and topology: Dynamic sequences and topologies of proteins. Current Opinion in Structural Biology. 50: vii-viii. PMID 30080482 DOI: 10.1016/J.Sbi.2018.07.005 |
0.345 |
|
| 2018 |
Severo MS, Landry JJM, Lindquist RL, Goosmann C, Brinkmann V, Collier P, Hauser AE, Benes V, Henriksson J, Teichmann SA, Levashina EA. Unbiased classification of mosquito blood cells by single-cell genomics and high-content imaging. Proceedings of the National Academy of Sciences of the United States of America. 115: E7568-E7577. PMID 30038005 DOI: 10.1073/Pnas.1803062115 |
0.344 |
|
| 2018 |
Svensson V, Vento-Tormo R, Teichmann SA. Exponential scaling of single-cell RNA-seq in the past decade. Nature Protocols. 13: 599-604. PMID 29494575 DOI: 10.1038/Nprot.2017.149 |
0.321 |
|
| 2018 |
Natan E, Endoh T, Haim-Vilmovsky L, Flock T, Chalancon G, Hopper JTS, Kintses B, Horvath P, Daruka L, Fekete G, Pál C, Papp B, Oszi E, Magyar Z, Marsh JA, ... ... Teichmann SA, et al. Cotranslational protein assembly imposes evolutionary constraints on homomeric proteins. Nature Structural & Molecular Biology. PMID 29434345 DOI: 10.1038/S41594-018-0029-5 |
0.391 |
|
| 2018 |
Nawijn M, Carpaij O, Braga FV, Berg M, Brouwer S, Kar G, Teichmann S, Berge MVd. Novel cell types and altered cell states in asthma revealed by single-cell RNA sequencing of airway wall biopsies. European Respiratory Journal. 52. DOI: 10.1183/13993003.Congress-2018.Oa505 |
0.307 |
|
| 2017 |
Regev A, Teichmann SA, Lander ES, Amit I, Benoist C, Birney E, Bodenmiller B, Campbell PJ, Carninci P, Clatworthy M, Clevers H, Deplancke B, Dunham I, Eberwine J, Eils R, et al. Science Forum: The Human Cell Atlas. Elife. 6. PMID 29206104 DOI: 10.7554/Elife.27041 |
0.323 |
|
| 2017 |
Stubbington MJT, Rozenblatt-Rosen O, Regev A, Teichmann SA. Single-cell transcriptomics to explore the immune system in health and disease. Science (New York, N.Y.). 358: 58-63. PMID 28983043 DOI: 10.1126/Science.Aan6828 |
0.346 |
|
| 2017 |
Haque A, Engel J, Teichmann SA, Lönnberg T. A practical guide to single-cell RNA-sequencing for biomedical research and clinical applications. Genome Medicine. 9: 75. PMID 28821273 DOI: 10.1186/S13073-017-0467-4 |
0.32 |
|
| 2017 |
Natarajan KN, Teichmann SA, Kolodziejczyk AA. Single cell transcriptomics of pluripotent stem cells: reprogramming and differentiation. Current Opinion in Genetics & Development. 46: 66-76. PMID 28675884 DOI: 10.1016/J.Gde.2017.06.003 |
0.322 |
|
| 2017 |
Kar G, Kim JK, Kolodziejczyk AA, Natarajan KN, Torlai Triglia E, Mifsud B, Elderkin S, Marioni JC, Pombo A, Teichmann SA. Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression. Nature Communications. 8: 36. PMID 28652613 DOI: 10.1038/S41467-017-00052-2 |
0.356 |
|
| 2017 |
Rostom R, Svensson V, Teichmann SA, Kar G. Computational approaches for interpreting scRNA-seq data. Febs Letters. PMID 28524227 DOI: 10.1002/1873-3468.12684 |
0.332 |
|
| 2017 |
Donati G, Rognoni E, Hiratsuka T, Liakath-Ali K, Hoste E, Kar G, Kayikci M, Russell R, Kretzschmar K, Mulder KW, Teichmann SA, Watt FM. Wounding induces dedifferentiation of epidermal Gata6(+) cells and acquisition of stem cell properties. Nature Cell Biology. PMID 28504705 DOI: 10.1038/Ncb3532 |
0.334 |
|
| 2017 |
Martinez-Jimenez CP, Eling N, Chen HC, Vallejos CA, Kolodziejczyk AA, Connor F, Stojic L, Rayner TF, Stubbington MJ, Teichmann SA, de la Roche M, Marioni JC, Odom DT. Aging increases cell-to-cell transcriptional variability upon immune stimulation. Science (New York, N.Y.). 355: 1433-1436. PMID 28360329 DOI: 10.1126/Science.Aah4115 |
0.332 |
|
| 2017 |
Lönnberg T, Svensson V, James KR, Fernandez-Ruiz D, Sebina I, Montandon R, Soon MS, Fogg LG, Nair AS, Liligeto U, Stubbington MJ, Ly LH, Bagger FO, Zwiessele M, Lawrence ND, ... ... Teichmann SA, et al. Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria. Science Immunology. 2. PMID 28345074 DOI: 10.1126/Sciimmunol.Aal2192 |
0.339 |
|
| 2017 |
Vieira Braga FA, Teichmann SA, Stubbington MJ. Are cells from a snowman realistic? Cryopreserved tissues as a source for single-cell RNA-sequencing experiments. Genome Biology. 18: 54. PMID 28340618 DOI: 10.1186/S13059-017-1192-4 |
0.327 |
|
| 2017 |
Svensson V, Natarajan KN, Ly LH, Miragaia RJ, Labalette C, Macaulay IC, Cvejic A, Teichmann SA. Power analysis of single-cell RNA-sequencing experiments. Nature Methods. PMID 28263961 DOI: 10.1038/Nmeth.4220 |
0.36 |
|
| 2017 |
Carmona SJ, Teichmann SA, Ferreira L, Macaulay IC, Stubbington MJ, Cvejic A, Gfeller D. Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types. Genome Research. PMID 28087841 DOI: 10.1101/Gr.207704.116 |
0.368 |
|
| 2017 |
Wu YL, Stubbington MJ, Daly M, Teichmann SA, Rada C. Intrinsic transcriptional heterogeneity in B cells controls early class switching to IgE. The Journal of Experimental Medicine. 214: 183-196. PMID 27994069 DOI: 10.1084/Jem.20161056 |
0.316 |
|
| 2017 |
Svensson V, Lönnberg T, James K, Stegle O, Haque A, Teichmann SA. Computationally resolving the bifurcation of Th1 and Tfh cell fates with single-cell RNA-sequencing F1000research. 6. DOI: 10.7490/F1000Research.1113887.1 |
0.322 |
|
| 2017 |
Miragaia RJ, Teichmann SA, Hagai T. Single-cell insights into transcriptomic diversity in immunity Current Opinion in Systems Biology. 5: 63-71. DOI: 10.1016/J.Coisb.2017.08.003 |
0.326 |
|
| 2016 |
Natan E, Wells JN, Teichmann SA, Marsh JA. Regulation, evolution and consequences of cotranslational protein complex assembly. Current Opinion in Structural Biology. 42: 90-97. PMID 27969102 DOI: 10.1016/J.Sbi.2016.11.023 |
0.374 |
|
| 2016 |
Tzelepis K, Koike-Yusa H, De Braekeleer E, Li Y, Metzakopian E, Dovey OM, Mupo A, Grinkevich V, Li M, Mazan M, Gozdecka M, Ohnishi S, Cooper J, Patel M, McKerrell T, ... ... Teichmann S, et al. A CRISPR Dropout Screen Identifies Genetic Vulnerabilities and Therapeutic Targets in Acute Myeloid Leukemia. Cell Reports. 17: 1193-1205. PMID 27760321 DOI: 10.1016/J.Celrep.2016.09.079 |
0.599 |
|
| 2016 |
Eckersley-Maslin MA, Svensson V, Krueger C, Stubbs TM, Giehr P, Krueger F, Miragaia RJ, Kyriakopoulos C, Berrens RV, Milagre I, Walter J, Teichmann SA, Reik W. MERVL/Zscan4 Network Activation Results in Transient Genome-wide DNA Demethylation of mESCs. Cell Reports. 17: 179-92. PMID 27681430 DOI: 10.1016/J.Celrep.2016.08.087 |
0.359 |
|
| 2016 |
Sousa FL, Parente DJ, Hessman JA, Chazelle A, Teichmann SA, Swint-Kruse L. Data on publications, structural analyses, and queries used to build and utilize the AlloRep database. Data in Brief. 8: 948-57. PMID 27508249 DOI: 10.1016/J.Dib.2016.07.006 |
0.383 |
|
| 2016 |
Vieira Braga FA, Teichmann SA, Chen X. Genetics and immunity in the era of single cell genomics. Human Molecular Genetics. PMID 27412011 DOI: 10.1093/Hmg/Ddw192 |
0.36 |
|
| 2016 |
Linnarsson S, Teichmann SA. Single-cell genomics: coming of age. Genome Biology. 17: 97. PMID 27160975 DOI: 10.1186/S13059-016-0960-X |
0.417 |
|
| 2016 |
Stubbington MJ, Lönnberg T, Proserpio V, Clare S, Speak AO, Dougan G, Teichmann SA. T cell fate and clonality inference from single-cell transcriptomes. Nature Methods. PMID 26950746 DOI: 10.1038/Nmeth.3800 |
0.318 |
|
| 2016 |
Ilicic T, Kim JK, Kolodziejczyk AA, Bagger FO, McCarthy DJ, Marioni JC, Teichmann SA. Classification of low quality cells from single-cell RNA-seq data. Genome Biology. 17: 29. PMID 26887813 DOI: 10.1186/S13059-016-0888-1 |
0.323 |
|
| 2016 |
Macaulay IC, Svensson V, Labalette C, Ferreira L, Hamey F, Voet T, Teichmann SA, Cvejic A. Single-Cell RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in Hematopoietic Cells. Cell Reports. PMID 26804912 DOI: 10.1016/J.Celrep.2015.12.082 |
0.359 |
|
| 2016 |
Kim JK, Kolodziejczyk AA, Ilicic T, Teichmann SA, Marioni JC. Corrigendum: Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression. Nature Communications. 7: 10415. PMID 26752026 DOI: 10.1038/Ncomms10415 |
0.302 |
|
| 2015 |
Ahnert SE, Marsh JA, Hernández H, Robinson CV, Teichmann SA. Principles of assembly reveal a periodic table of protein complexes. Science (New York, N.Y.). 350: aaa2245. PMID 26659058 DOI: 10.1126/Science.Aaa2245 |
0.378 |
|
| 2015 |
Kolodziejczyk AA, Kim JK, Tsang JC, Ilicic T, Henriksson J, Natarajan KN, Tuck AC, Gao X, Bühler M, Liu P, Marioni JC, Teichmann SA. Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation. Cell Stem Cell. 17: 471-485. PMID 26431182 DOI: 10.1016/J.Stem.2015.09.011 |
0.36 |
|
| 2015 |
Sousa FL, Parente DJ, Shis DL, Hessman JA, Chazelle A, Bennett MR, Teichmann SA, Swint-Kruse L. AlloRep: a repository of sequence, structural and mutagenesis data for the LacI/GalR transcription regulators. Journal of Molecular Biology. PMID 26410588 DOI: 10.1016/J.Jmb.2015.09.015 |
0.414 |
|
| 2015 |
Tsang JC, Yu Y, Burke S, Buettner F, Wang C, Kolodziejczyk AA, Teichmann SA, Lu L, Liu P. Single-cell transcriptomic reconstruction reveals cell cycle and multi-lineage differentiation defects in Bcl11a-deficient hematopoietic stem cells. Genome Biology. 16: 178. PMID 26387834 DOI: 10.1186/S13059-015-0739-5 |
0.336 |
|
| 2015 |
Scialdone A, Natarajan KN, Saraiva LR, Proserpio V, Teichmann SA, Stegle O, Marioni JC, Buettner F. Computational assignment of cell-cycle stage from single-cell transcriptome data. Methods (San Diego, Calif.). 85: 54-61. PMID 26142758 DOI: 10.1016/J.Ymeth.2015.06.021 |
0.344 |
|
| 2015 |
Xie X, Stubbington MJ, Nissen JK, Andersen KG, Hebenstreit D, Teichmann SA, Betz AG. The Regulatory T Cell Lineage Factor Foxp3 Regulates Gene Expression through Several Distinct Mechanisms Mostly Independent of Direct DNA Binding. Plos Genetics. 11: e1005251. PMID 26107960 DOI: 10.1371/Journal.Pgen.1005251 |
0.384 |
|
| 2015 |
Kolodziejczyk AA, Kim JK, Svensson V, Marioni JC, Teichmann SA. The Technology and Biology of Single-Cell RNA Sequencing. Molecular Cell. 58: 610-620. PMID 26000846 DOI: 10.1016/J.Molcel.2015.04.005 |
0.371 |
|
| 2015 |
Stubbington MJ, Mahata B, Svensson V, Deonarine A, Nissen JK, Betz AG, Teichmann SA. An atlas of mouse CD4(+) T cell transcriptomes. Biology Direct. 10: 14. PMID 25886751 DOI: 10.1186/S13062-015-0045-X |
0.334 |
|
| 2015 |
Marsh JA, Rees HA, Ahnert SE, Teichmann SA. Structural and evolutionary versatility in protein complexes with uneven stoichiometry. Nature Communications. 6: 6394. PMID 25775164 DOI: 10.1038/Ncomms7394 |
0.378 |
|
| 2015 |
Stegle O, Teichmann SA, Marioni JC. Computational and analytical challenges in single-cell transcriptomics. Nature Reviews. Genetics. 16: 133-45. PMID 25628217 DOI: 10.1038/Nrg3833 |
0.348 |
|
| 2015 |
Buettner F, Natarajan KN, Casale FP, Proserpio V, Scialdone A, Theis FJ, Teichmann SA, Marioni JC, Stegle O. Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells. Nature Biotechnology. 33: 155-60. PMID 25599176 DOI: 10.1038/Nbt.3102 |
0.355 |
|
| 2015 |
Marsh JA, Teichmann SA. Structure, dynamics, assembly, and evolution of protein complexes. Annual Review of Biochemistry. 84: 551-75. PMID 25494300 DOI: 10.1146/Annurev-Biochem-060614-034142 |
0.371 |
|
| 2014 |
Perica T, Kondo Y, Tiwari SP, McLaughlin SH, Kemplen KR, Zhang X, Steward A, Reuter N, Clarke J, Teichmann SA. Evolution of oligomeric state through allosteric pathways that mimic ligand binding. Science (New York, N.Y.). 346: 1254346. PMID 25525255 DOI: 10.1126/Science.1254346 |
0.335 |
|
| 2014 |
Marsh JA, Teichmann SA. Protein flexibility facilitates quaternary structure assembly and evolution. Plos Biology. 12: e1001870. PMID 24866000 DOI: 10.1371/Journal.Pbio.1001870 |
0.376 |
|
| 2014 |
Marsh JA, Teichmann SA. Parallel dynamics and evolution: Protein conformational fluctuations and assembly reflect evolutionary changes in sequence and structure. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 36: 209-18. PMID 24272815 DOI: 10.1002/Bies.201300134 |
0.383 |
|
| 2014 |
Marsh JA, Ahnert SE, Teichmann SA. Evolutionary Excursions in Quaternary Structure Space Biophysical Journal. 106: 685a. DOI: 10.1016/J.Bpj.2013.11.3790 |
0.377 |
|
| 2014 |
Tiwari SP, Perica T, Kondo Y, McLaughlin S, Steward A, Clarke J, Teichmann SA, Reuter N. Studying the Role of Protein Flexibility in Allosteric and Evolutionary Changes as Seen in PyrR Protein Family Biophysical Journal. 106: 466a. DOI: 10.1016/J.Bpj.2013.11.2639 |
0.369 |
|
| 2013 |
Brennecke P, Anders S, Kim JK, Ko?odziejczyk AA, Zhang X, Proserpio V, Baying B, Benes V, Teichmann SA, Marioni JC, Heisler MG. Accounting for technical noise in single-cell RNA-seq experiments. Nature Methods. 10: 1093-5. PMID 24056876 DOI: 10.1038/Nmeth.2645 |
0.318 |
|
| 2013 |
Zhang X, Perica T, Teichmann SA. Evolution of protein structures and interactions from the perspective of residue contact networks. Current Opinion in Structural Biology. 23: 954-63. PMID 23890840 DOI: 10.1016/J.Sbi.2013.07.004 |
0.404 |
|
| 2013 |
Hall Z, Hernández H, Marsh JA, Teichmann SA, Robinson CV. The role of salt bridges, charge density, and subunit flexibility in determining disassembly routes of protein complexes. Structure (London, England : 1993). 21: 1325-37. PMID 23850452 DOI: 10.1016/J.Str.2013.06.004 |
0.316 |
|
| 2013 |
Marsh JA, Hernández H, Hall Z, Ahnert SE, Perica T, Robinson CV, Teichmann SA. Protein complexes are under evolutionary selection to assemble via ordered pathways. Cell. 153: 461-70. PMID 23582331 DOI: 10.1016/J.Cell.2013.02.044 |
0.391 |
|
| 2013 |
Nishi H, Fong JH, Chang C, Teichmann SA, Panchenko AR. Regulation of protein-protein binding by coupling between phosphorylation and intrinsic disorder: analysis of human protein complexes. Molecular Biosystems. 9: 1620-6. PMID 23364837 DOI: 10.1039/C3Mb25514J |
0.334 |
|
| 2013 |
Teichmann SA. Gene Expression Genomics Biophysical Journal. 104: 534a. DOI: 10.1016/J.Bpj.2012.11.2954 |
0.342 |
|
| 2013 |
Marsh JA, Hernández H, Hall Z, Ahnert SE, Perica T, Robinson CV, Teichmann SA. Structural and Evolutionary Dynamics Facilitate Ordered Protein Complex Assembly Biophysical Journal. 104: 391a. DOI: 10.1016/J.Bpj.2012.11.2182 |
0.377 |
|
| 2012 |
Levy ED, De S, Teichmann SA. Cellular crowding imposes global constraints on the chemistry and evolution of proteomes. Proceedings of the National Academy of Sciences of the United States of America. 109: 20461-6. PMID 23184996 DOI: 10.1073/Pnas.1209312109 |
0.414 |
|
| 2012 |
Teichmann SA, Wigge PA, Charoensawan V. Uncovering the interplay between DNA sequence preferences of transcription factors and nucleosomes. Cell Cycle (Georgetown, Tex.). 11: 4487-8. PMID 23165207 DOI: 10.4161/Cc.22666 |
0.774 |
|
| 2012 |
Marsh JA, Teichmann SA, Forman-Kay JD. Probing the diverse landscape of protein flexibility and binding. Current Opinion in Structural Biology. 22: 643-50. PMID 22999889 DOI: 10.1016/J.Sbi.2012.08.008 |
0.361 |
|
| 2012 |
Charoensawan V, Janga SC, Bulyk ML, Babu MM, Teichmann SA. DNA sequence preferences of transcriptional activators correlate more strongly than repressors with nucleosomes. Molecular Cell. 47: 183-92. PMID 22841002 DOI: 10.1016/J.Molcel.2012.06.028 |
0.677 |
|
| 2012 |
Perica T, Marsh JA, Sousa FL, Natan E, Colwell LJ, Ahnert SE, Teichmann SA. The emergence of protein complexes: quaternary structure, dynamics and allostery. Colworth Medal Lecture. Biochemical Society Transactions. 40: 475-91. PMID 22616857 DOI: 10.1042/Bst20120056 |
0.391 |
|
| 2012 |
Perica T, Chothia C, Teichmann SA. Evolution of oligomeric state through geometric coupling of protein interfaces. Proceedings of the National Academy of Sciences of the United States of America. 109: 8127-32. PMID 22566652 DOI: 10.1073/Pnas.1120028109 |
0.62 |
|
| 2012 |
Liberles DA, Teichmann SA, Bahar I, Bastolla U, Bloom J, Bornberg-Bauer E, Colwell LJ, de Koning AP, Dokholyan NV, Echave J, Elofsson A, Gerloff DL, Goldstein RA, Grahnen JA, Holder MT, et al. The interface of protein structure, protein biophysics, and molecular evolution. Protein Science : a Publication of the Protein Society. 21: 769-85. PMID 22528593 DOI: 10.1002/Pro.2071 |
0.406 |
|
| 2012 |
Hebenstreit D, Deonarine A, Babu MM, Teichmann SA. Duel of the fates: the role of transcriptional circuits and noise in CD4+ cells. Current Opinion in Cell Biology. 24: 350-8. PMID 22498241 DOI: 10.1016/J.Ceb.2012.03.007 |
0.334 |
|
| 2012 |
Brookes E, de Santiago I, Hebenstreit D, Morris KJ, Carroll T, Xie SQ, Stock JK, Heidemann M, Eick D, Nozaki N, Kimura H, Ragoussis J, Teichmann SA, Pombo A. Polycomb associates genome-wide with a specific RNA polymerase II variant, and regulates metabolic genes in ESCs. Cell Stem Cell. 10: 157-70. PMID 22305566 DOI: 10.1016/J.Stem.2011.12.017 |
0.355 |
|
| 2012 |
Vaquerizas JM, Teichmann SA, Luscombe NM. How do you find transcription factors? Computational approaches to compile and annotate repertoires of regulators for any genome. Methods in Molecular Biology (Clifton, N.J.). 786: 3-19. PMID 21938617 DOI: 10.1007/978-1-61779-292-2_1 |
0.378 |
|
| 2012 |
Gatto S, Angelini C, Leppert S, Proserpio V, Teichmann S, D’Esposito M, R. Matarazzo M. Epigenomic and transcriptional effects of Dnmt3b mutations in human ICF syndrome-derived B cell lines. Embnet.Journal. 17: 33. DOI: 10.14806/Ej.17.B.281 |
0.334 |
|
| 2011 |
Hebenstreit D, Fang M, Gu M, Charoensawan V, van Oudenaarden A, Teichmann SA. RNA sequencing reveals two major classes of gene expression levels in metazoan cells. Molecular Systems Biology. 7: 497. PMID 21654674 DOI: 10.1038/Msb.2011.28 |
0.688 |
|
| 2011 |
Marsh JA, Teichmann SA. Relative solvent accessible surface area predicts protein conformational changes upon binding. Structure (London, England : 1993). 19: 859-67. PMID 21645856 DOI: 10.1016/J.Str.2011.03.010 |
0.353 |
|
| 2011 |
Hebenstreit D, Teichmann SA. Analysis and simulation of gene expression profiles in pure and mixed cell populations. Physical Biology. 8: 035013. PMID 21572174 DOI: 10.1088/1478-3975/8/3/035013 |
0.335 |
|
| 2011 |
Hebenstreit D, Gu M, Haider S, Turner DJ, Liò P, Teichmann SA. EpiChIP: gene-by-gene quantification of epigenetic modification levels. Nucleic Acids Research. 39: e27. PMID 21131282 DOI: 10.1093/Nar/Gkq1226 |
0.375 |
|
| 2010 |
Su J, Teichmann SA, Down TA. Assessing computational methods of cis-regulatory module prediction. Plos Computational Biology. 6: e1001020. PMID 21152003 DOI: 10.1371/Journal.Pcbi.1001020 |
0.319 |
|
| 2010 |
Charoensawan V, Adryan B, Martin S, Söllner C, Thisse B, Thisse C, Wright GJ, Teichmann SA. The impact of gene expression regulation on evolution of extracellular signaling pathways. Molecular & Cellular Proteomics : McP. 9: 2666-77. PMID 20935258 DOI: 10.1074/Mcp.M110.003020 |
0.717 |
|
| 2010 |
Martin S, Söllner C, Charoensawan V, Adryan B, Thisse B, Thisse C, Teichmann S, Wright GJ. Construction of a large extracellular protein interaction network and its resolution by spatiotemporal expression profiling. Molecular & Cellular Proteomics : McP. 9: 2654-65. PMID 20802085 DOI: 10.1074/Mcp.M110.004119 |
0.699 |
|
| 2010 |
Charoensawan V, Wilson D, Teichmann SA. Genomic repertoires of DNA-binding transcription factors across the tree of life. Nucleic Acids Research. 38: 7364-77. PMID 20675356 DOI: 10.1093/Nar/Gkq617 |
0.715 |
|
| 2010 |
Charoensawan V, Wilson D, Teichmann SA. Lineage-specific expansion of DNA-binding transcription factor families. Trends in Genetics : Tig. 26: 388-93. PMID 20675012 DOI: 10.1016/J.Tig.2010.06.004 |
0.704 |
|
| 2010 |
Venkatakrishnan AJ, Levy ED, Teichmann SA. Homomeric protein complexes: evolution and assembly. Biochemical Society Transactions. 38: 879-82. PMID 20658970 DOI: 10.1042/Bst0380879 |
0.351 |
|
| 2010 |
Marsh JA, Teichmann SA. How do proteins gain new domains? Genome Biology. 11: 126. PMID 20630117 DOI: 10.1186/Gb-2010-11-7-126 |
0.405 |
|
| 2010 |
Teichmann SA, Grishin N. Sequences and topology: evolution of proteins and evolution of computational approaches. Current Opinion in Structural Biology. 20: 333-4. PMID 20483587 DOI: 10.1016/J.Sbi.2010.04.004 |
0.45 |
|
| 2010 |
Adryan B, Teichmann SA. The developmental expression dynamics of Drosophila melanogaster transcription factors. Genome Biology. 11: R40. PMID 20384991 DOI: 10.1186/Gb-2010-11-4-R40 |
0.347 |
|
| 2010 |
Ravasi T, Suzuki H, Cannistraci CV, Katayama S, Bajic VB, Tan K, Akalin A, Schmeier S, Kanamori-Katayama M, Bertin N, Carninci P, Daub CO, Forrest AR, Gough J, Grimmond S, ... ... Teichmann SA, et al. An atlas of combinatorial transcriptional regulation in mouse and man. Cell. 140: 744-52. PMID 20211142 DOI: 10.1016/J.Cell.2010.01.044 |
0.635 |
|
| 2010 |
Pfreundt U, James DP, Tweedie S, Wilson D, Teichmann SA, Adryan B. FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database. Nucleic Acids Research. 38: D443-7. PMID 19884132 DOI: 10.1093/Nar/Gkp910 |
0.362 |
|
| 2009 |
Suzuki H, Forrest AR, van Nimwegen E, Daub CO, Balwierz PJ, Irvine KM, Lassmann T, Ravasi T, Hasegawa Y, de Hoon MJ, Katayama S, Schroder K, Carninci P, Tomaru Y, ... ... Teichmann S, et al. The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nature Genetics. 41: 553-62. PMID 19377474 DOI: 10.1038/Ng.375 |
0.631 |
|
| 2009 |
Wilson NK, Miranda-Saavedra D, Kinston S, Bonadies N, Foster SD, Calero-Nieto F, Dawson MA, Donaldson IJ, Dumon S, Frampton J, Janky R, Sun XH, Teichmann SA, Bannister AJ, Göttgens B. The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development. Blood. 113: 5456-65. PMID 19346495 DOI: 10.1182/Blood-2009-01-200048 |
0.381 |
|
| 2009 |
Vaquerizas JM, Kummerfeld SK, Teichmann SA, Luscombe NM. A census of human transcription factors: function, expression and evolution. Nature Reviews. Genetics. 10: 252-63. PMID 19274049 DOI: 10.1038/Nrg2538 |
0.389 |
|
| 2009 |
De S, Teichmann SA, Babu MM. The impact of genomic neighborhood on the evolution of human and chimpanzee transcriptome. Genome Research. 19: 785-94. PMID 19233772 DOI: 10.1101/Gr.086165.108 |
0.338 |
|
| 2009 |
Watkins NA, Gusnanto A, de Bono B, De S, Miranda-Saavedra D, Hardie DL, Angenent WG, Attwood AP, Ellis PD, Erber W, Foad NS, Garner SF, Isacke CM, Jolley J, Koch K, ... ... Teichmann S, et al. A HaemAtlas: characterizing gene expression in differentiated human blood cells. Blood. 113: e1-9. PMID 19228925 DOI: 10.1182/Blood-2008-06-162958 |
0.404 |
|
| 2009 |
Kummerfeld SK, Teichmann SA. Protein domain organisation: adding order. Bmc Bioinformatics. 10: 39. PMID 19178743 DOI: 10.1186/1471-2105-10-39 |
0.416 |
|
| 2009 |
Miranda-Saavedra D, De S, Trotter MW, Teichmann SA, Göttgens B. BloodExpress: a database of gene expression in mouse haematopoiesis. Nucleic Acids Research. 37: D873-9. PMID 18987008 DOI: 10.1093/Nar/Gkn854 |
0.356 |
|
| 2009 |
Martin S, Charoensawan V, Soellner C, Adryan B, Thisse B, Thisse C, Teichmann S, Wright G. 18-P009 Regulation and evolution of an extracellular glycoprotein interaction network Mechanisms of Development. 126: S287. DOI: 10.1016/J.Mod.2009.06.776 |
0.651 |
|
| 2008 |
Gsponer J, Futschik ME, Teichmann SA, Babu MM. Tight regulation of unstructured proteins: from transcript synthesis to protein degradation. Science (New York, N.Y.). 322: 1365-8. PMID 19039133 DOI: 10.1126/Science.1163581 |
0.362 |
|
| 2008 |
De S, Lopez-Bigas N, Teichmann SA. Patterns of evolutionary constraints on genes in humans. Bmc Evolutionary Biology. 8: 275. PMID 18840274 DOI: 10.1186/1471-2148-8-275 |
0.333 |
|
| 2008 |
Levy ED, Boeri Erba E, Robinson CV, Teichmann SA. Assembly reflects evolution of protein complexes. Nature. 453: 1262-5. PMID 18563089 DOI: 10.1038/Nature06942 |
0.394 |
|
| 2008 |
Teichmann SA, Grishin NV. Sequences and topology: from genome structure to protein structure. Current Opinion in Structural Biology. 18: 340-1. PMID 18539451 DOI: 10.1016/J.Sbi.2008.05.006 |
0.378 |
|
| 2008 |
Hermsen R, ten Wolde PR, Teichmann S. Chance and necessity in chromosomal gene distributions Trends in Genetics. 24: 216-219. PMID 18378035 DOI: 10.1016/J.Tig.2008.02.004 |
0.321 |
|
| 2008 |
Lopez-Bigas N, De S, Teichmann SA. Functional protein divergence in the evolution of Homo sapiens. Genome Biology. 9: R33. PMID 18279504 DOI: 10.1186/Gb-2008-9-2-R33 |
0.411 |
|
| 2008 |
Wilson D, Charoensawan V, Kummerfeld SK, Teichmann SA. DBD--taxonomically broad transcription factor predictions: new content and functionality. Nucleic Acids Research. 36: D88-92. PMID 18073188 DOI: 10.1093/Nar/Gkm964 |
0.713 |
|
| 2007 |
Adryan B, Teichmann SA. Computational identification of site-specific transcription factors in Drosophila. Fly. 1: 142-5. PMID 18820428 DOI: 10.4161/Fly.4571 |
0.323 |
|
| 2007 |
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Teichmann S, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341 |
0.361 |
|
| 2007 |
Pereira-Leal JB, Levy ED, Kamp C, Teichmann SA. Evolution of protein complexes by duplication of homomeric interactions. Genome Biology. 8: R51. PMID 17411433 DOI: 10.1186/Gb-2007-8-4-R51 |
0.682 |
|
| 2007 |
Han JH, Batey S, Nickson AA, Teichmann SA, Clarke J. The folding and evolution of multidomain proteins. Nature Reviews. Molecular Cell Biology. 8: 319-30. PMID 17356578 DOI: 10.1038/Nrm2144 |
0.427 |
|
| 2007 |
Talavera D, Vogel C, Orozco M, Teichmann SA, de la Cruz X. The (in)dependence of alternative splicing and gene duplication. Plos Computational Biology. 3: e33. PMID 17335345 DOI: 10.1371/Journal.Pcbi.0030033 |
0.435 |
|
| 2006 |
Levy ED, Pereira-Leal JB, Chothia C, Teichmann SA. 3D complex: a structural classification of protein complexes. Plos Computational Biology. 2: e155. PMID 17112313 DOI: 10.1371/Journal.Pcbi.0020155 |
0.748 |
|
| 2006 |
Han JH, Kerrison N, Chothia C, Teichmann SA. Divergence of interdomain geometry in two-domain proteins. Structure (London, England : 1993). 14: 935-45. PMID 16698554 DOI: 10.1016/J.Str.2006.01.016 |
0.764 |
|
| 2006 |
Nye TMW, Berzuini C, Gilks WR, Babu MM, Teichmann S. Predicting the strongest domain-domain contact in interacting protein pairs Statistical Applications in Genetics and Molecular Biology [Electronic Resource].. 5: Article5. PMID 16646869 DOI: 10.2202/1544-6115.1195 |
0.394 |
|
| 2006 |
Adryan B, Teichmann SA. FlyTF: a systematic review of site-specific transcription factors in the fruit fly Drosophila melanogaster. Bioinformatics (Oxford, England). 22: 1532-3. PMID 16613907 DOI: 10.1093/Bioinformatics/Btl143 |
0.405 |
|
| 2006 |
Madan Babu M, Teichmann SA, Aravind L. Evolutionary dynamics of prokaryotic transcriptional regulatory networks. Journal of Molecular Biology. 358: 614-33. PMID 16530225 DOI: 10.1016/J.Jmb.2006.02.019 |
0.343 |
|
| 2006 |
Pereira-Leal JB, Levy ED, Teichmann SA. The origins and evolution of functional modules: lessons from protein complexes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 507-17. PMID 16524839 DOI: 10.1098/Rstb.2005.1807 |
0.684 |
|
| 2006 |
Kummerfeld SK, Teichmann SA. DBD: a transcription factor prediction database. Nucleic Acids Research. 34: D74-81. PMID 16381970 DOI: 10.1093/Nar/Gkj131 |
0.409 |
|
| 2005 |
Wright CF, Teichmann SA, Clarke J, Dobson CM. The importance of sequence diversity in the aggregation and evolution of proteins. Nature. 438: 878-81. PMID 16341018 DOI: 10.1038/Nature04195 |
0.416 |
|
| 2005 |
Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, ... ... Teichmann SA, et al. The transcriptional landscape of the mammalian genome. Science (New York, N.Y.). 309: 1559-63. PMID 16141072 DOI: 10.1126/Science.1112014 |
0.709 |
|
| 2005 |
Pereira-Leal JB, Teichmann SA. Novel specificities emerge by stepwise duplication of functional modules. Genome Research. 15: 552-9. PMID 15805495 DOI: 10.1101/Gr.3102105 |
0.661 |
|
| 2005 |
Kunin V, Teichmann SA, Huynen MA, Ouzounis CA. The properties of protein family space depend on experimental design. Bioinformatics (Oxford, England). 21: 2618-22. PMID 15769834 DOI: 10.1093/Bioinformatics/Bti386 |
0.578 |
|
| 2005 |
Bornberg-Bauer E, Beaussart F, Kummerfeld SK, Teichmann SA, Weiner J. The evolution of domain arrangements in proteins and interaction networks. Cellular and Molecular Life Sciences : Cmls. 62: 435-45. PMID 15719170 DOI: 10.1007/S00018-004-4416-1 |
0.417 |
|
| 2005 |
Kummerfeld SK, Teichmann SA. Relative rates of gene fusion and fission in multi-domain proteins. Trends in Genetics : Tig. 21: 25-30. PMID 15680510 DOI: 10.1016/J.Tig.2004.11.007 |
0.429 |
|
| 2005 |
Vogel C, Teichmann SA, Pereira-Leal J. The relationship between domain duplication and recombination. Journal of Molecular Biology. 346: 355-65. PMID 15663950 DOI: 10.1016/J.Jmb.2004.11.050 |
0.681 |
|
| 2005 |
Nye TM, Berzuini C, Gilks WR, Babu MM, Teichmann SA. Statistical analysis of domains in interacting protein pairs. Bioinformatics (Oxford, England). 21: 993-1001. PMID 15509600 DOI: 10.1093/Bioinformatics/Bti086 |
0.398 |
|
| 2004 |
Luscombe NM, Babu MM, Yu H, Snyder M, Teichmann SA, Gerstein M. Genomic analysis of regulatory network dynamics reveals large topological changes. Nature. 431: 308-12. PMID 15372033 DOI: 10.1038/Nature02782 |
0.497 |
|
| 2004 |
Babu MM, Luscombe NM, Aravind L, Gerstein M, Teichmann SA. Structure and evolution of transcriptional regulatory networks. Current Opinion in Structural Biology. 14: 283-91. PMID 15193307 DOI: 10.1016/J.Sbi.2004.05.004 |
0.509 |
|
| 2004 |
Teichmann SA, Babu MM. Gene regulatory network growth by duplication. Nature Genetics. 36: 492-6. PMID 15107850 DOI: 10.1038/Ng1340 |
0.351 |
|
| 2004 |
Vogel C, Berzuini C, Bashton M, Gough J, Teichmann SA. Supra-domains: evolutionary units larger than single protein domains. Journal of Molecular Biology. 336: 809-23. PMID 15095989 DOI: 10.1016/J.Jmb.2003.12.026 |
0.771 |
|
| 2004 |
Vogel C, Bashton M, Kerrison ND, Chothia C, Teichmann SA. Structure, function and evolution of multidomain proteins. Current Opinion in Structural Biology. 14: 208-16. PMID 15093836 DOI: 10.1016/J.Sbi.2004.03.011 |
0.791 |
|
| 2003 |
Apic G, Huber W, Teichmann SA. Multi-domain protein families and domain pairs: comparison with known structures and a random model of domain recombination. Journal of Structural and Functional Genomics. 4: 67-78. PMID 14649290 DOI: 10.1023/A:1026113408773 |
0.397 |
|
| 2003 |
Vogel C, Teichmann SA, Chothia C. The immunoglobulin superfamily in Drosophila melanogaster and Caenorhabditis elegans and the evolution of complexity. Development (Cambridge, England). 130: 6317-28. PMID 14623821 DOI: 10.1242/Dev.00848 |
0.639 |
|
| 2003 |
Bankier AT, Spriggs HF, Fartmann B, Konfortov BA, Madera M, Vogel C, Teichmann SA, Ivens A, Dear PH. Integrated mapping, chromosomal sequencing and sequence analysis of Cryptosporidium parvum. Genome Research. 13: 1787-99. PMID 12869580 DOI: 10.1101/Gr.1555203 |
0.376 |
|
| 2003 |
Chothia C, Gough J, Vogel C, Teichmann SA. Evolution of the protein repertoire. Science (New York, N.Y.). 300: 1701-3. PMID 12805536 DOI: 10.1126/Science.1085371 |
0.751 |
|
| 2003 |
Madan Babu M, Teichmann SA. Evolution of transcription factors and the gene regulatory network in Escherichia coli. Nucleic Acids Research. 31: 1234-44. PMID 12582243 DOI: 10.1093/Nar/Gkg210 |
0.385 |
|
| 2003 |
Madan Babu M, Teichmann SA. Functional determinants of transcription factors in Escherichia coli: protein families and binding sites. Trends in Genetics : Tig. 19: 75-9. PMID 12547514 DOI: 10.1016/S0168-9525(02)00039-2 |
0.378 |
|
| 2002 |
Teichmann SA. The constraints protein-protein interactions place on sequence divergence. Journal of Molecular Biology. 324: 399-407. PMID 12445777 DOI: 10.1016/S0022-2836(02)01144-0 |
0.426 |
|
| 2002 |
Teichmann SA. Principles of protein-protein interactions. Bioinformatics (Oxford, England). 18: S249. PMID 12386009 |
0.318 |
|
| 2002 |
Teichmann SA, Babu MM. Conservation of gene co-regulation in prokaryotes and eukaryotes. Trends in Biotechnology. 20: 407-10; discussion 4. PMID 12220896 DOI: 10.1016/S0167-7799(02)02032-2 |
0.374 |
|
| 2002 |
Rison SC, Teichmann SA, Thornton JM. Homology, pathway distance and chromosomal localization of the small molecule metabolism enzymes in Escherichia coli. Journal of Molecular Biology. 318: 911-32. PMID 12054833 DOI: 10.1016/S0022-2836(02)00140-7 |
0.489 |
|
| 2002 |
Jardine O, Gough J, Chothia C, Teichmann SA. Comparison of the small molecule metabolic enzymes of Escherichia coli and Saccharomyces cerevisiae. Genome Research. 12: 916-29. PMID 12045145 DOI: 10.1101/Gr.228002 |
0.714 |
|
| 2001 |
Teichmann SA, Rison SC, Thornton JM, Riley M, Gough J, Chothia C. Small-molecule metabolism: an enzyme mosaic. Trends in Biotechnology. 19: 482-6. PMID 11711174 DOI: 10.1016/S0167-7799(01)01813-3 |
0.743 |
|
| 2001 |
Teichmann SA, Rison SC, Thornton JM, Riley M, Gough J, Chothia C. The evolution and structural anatomy of the small molecule metabolic pathways in Escherichia coli. Journal of Molecular Biology. 311: 693-708. PMID 11518524 DOI: 10.1006/Jmbi.2001.4912 |
0.764 |
|
| 2001 |
Apic G, Gough J, Teichmann SA. An insight into domain combinations. Bioinformatics (Oxford, England). 17: S83-9. PMID 11472996 DOI: 10.1093/Bioinformatics/17.Suppl_1.S83 |
0.679 |
|
| 2001 |
Apic G, Gough J, Teichmann SA. Domain combinations in archaeal, eubacterial and eukaryotic proteomes. Journal of Molecular Biology. 310: 311-25. PMID 11428892 DOI: 10.1006/Jmbi.2001.4776 |
0.673 |
|
| 2001 |
Teichmann SA, Murzin AG, Chothia C. Determination of protein function, evolution and interactions by structural genomics. Current Opinion in Structural Biology. 11: 354-63. PMID 11406387 DOI: 10.1016/S0959-440X(00)00215-3 |
0.636 |
|
| 2001 |
Qian J, Stenger B, Wilson CA, Lin J, Jansen R, Teichmann SA, Park J, Krebs WG, Yu H, Alexandrov V, Echols N, Gerstein M. PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information. Nucleic Acids Research. 29: 1750-64. PMID 11292848 DOI: 10.1093/Nar/29.8.1750 |
0.509 |
|
| 2001 |
Park J, Lappe M, Teichmann SA. Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast. Journal of Molecular Biology. 307: 929-38. PMID 11273711 DOI: 10.1006/Jmbi.2001.4526 |
0.404 |
|
| 2000 |
Teichmann SA, Chothia C, Church GM, Park J. Fast assignment of protein structures to sequences using the intermediate sequence library PDB-ISL. Bioinformatics (Oxford, England). 16: 117-24. PMID 10842732 DOI: 10.1093/Bioinformatics/16.2.117 |
0.61 |
|
| 2000 |
Teichmann SA, Chothia C. Immunoglobulin superfamily proteins in Caenorhabditis elegans. Journal of Molecular Biology. 296: 1367-83. PMID 10698639 DOI: 10.1006/Jmbi.1999.3497 |
0.664 |
|
| 2000 |
Teichmann SA, Mitchison G. Computing protein function. Nature Biotechnology. 18: 27. PMID 10625385 DOI: 10.1038/71882 |
0.31 |
|
| 2000 |
Teichmann SA, Chothia C, Church GM, Park J. PDB_ISL: An intermediate sequence library for protein structure assignment Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 283-289. |
0.575 |
|
| 1999 |
Teichmann SA, Mitchison G. Is there a phylogenetic signal in prokaryote proteins? Journal of Molecular Evolution. 49: 98-107. PMID 10368438 DOI: 10.1007/Pl00006538 |
0.37 |
|
| 1999 |
Teichmann SA, Chothia C, Gerstein M. Advances in structural genomics Current Opinion in Structural Biology. 9: 390-399. PMID 10361097 DOI: 10.1016/S0959-440X(99)80053-0 |
0.702 |
|
| 1999 |
Teichmann SA, Mitchison G. Making family trees from gene families Nature Genetics. 21: 66-67. PMID 9916790 DOI: 10.1038/5001 |
0.373 |
|
| 1998 |
Teichmann SA, Parkt J, Chothia C. Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements Proceedings of the National Academy of Sciences of the United States of America. 95: 14658-14663. PMID 9843945 DOI: 10.1073/Pnas.95.25.14658 |
0.645 |
|
| 1998 |
Bateman A, Murzin AG, Teichmann SA. Structure and distribution of pentapeptide repeats in bacteria Protein Science. 7: 1477-1480. PMID 9655353 DOI: 10.1002/Pro.5560070625 |
0.532 |
|
| 1998 |
Park J, Teichmann SA. DIVCLUS: An automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins Bioinformatics. 14: 144-150. PMID 9545446 DOI: 10.1093/Bioinformatics/14.2.144 |
0.396 |
|
| 1997 |
Park J, Teichmann SA, Hubbard T, Chothia C. Intermediate sequences increase the detection of homology between sequences Journal of Molecular Biology. 273: 349-354. PMID 9367767 DOI: 10.1006/Jmbi.1997.1288 |
0.585 |
|
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