John Mattick - Related publications

Affiliations: 
University of Queensland, Saint Lucia, Queensland, Australia 
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Hartenian E, Glaunsinger BA. Feedback to the central dogma: cytoplasmic mRNA decay and transcription are interdependent processes. Critical Reviews in Biochemistry and Molecular Biology. 1-14. PMID 31656086 DOI: 10.1080/10409238.2019.1679083   
2019 Zhang X, Wang W, Zhu W, Dong J, Cheng Y, Yin Z, Shen F. Mechanisms and Functions of Long Non-Coding RNAs at Multiple Regulatory Levels. International Journal of Molecular Sciences. 20. PMID 31717266 DOI: 10.3390/ijms20225573   
2019 Gao C, Wang Y. mRNA Metabolism in Cardiac Development and Disease - Life After Transcription. Physiological Reviews. PMID 31751167 DOI: 10.1152/physrev.00007.2019   
2019 Cao Y, Ma L. To Splice or to Transcribe: SKIP-Mediated Environmental Fitness and Development in Plants. Frontiers in Plant Science. 10: 1222. PMID 31632433 DOI: 10.3389/fpls.2019.01222   
2019 Ule J, Blencowe BJ. Alternative Splicing Regulatory Networks: Functions, Mechanisms, and Evolution. Molecular Cell. 76: 329-345. PMID 31626751 DOI: 10.1016/j.molcel.2019.09.017   
2019 Thomas HB, O'Keefe RT. Advanced Methods for the Analysis of Altered Pre-mRNA Splicing in Yeast and Disease. Methods in Molecular Biology (Clifton, N.J.). 2049: 131-140. PMID 31602609 DOI: 10.1007/978-1-4939-9736-7_8   
2019 Parenteau J, Abou Elela S. Introns: Good Day Junk Is Bad Day Treasure. Trends in Genetics : Tig. 35: 923-934. PMID 31668856 DOI: 10.1016/j.tig.2019.09.010   
2019 Gallegos JE, Rose AB. An intron-derived motif strongly increases gene expression from transcribed sequences through a splicing independent mechanism in Arabidopsis thaliana. Scientific Reports. 9: 13777. PMID 31551463 DOI: 10.1038/s41598-019-50389-5   
2019 Liyanage C, Fernando A, Batra J. Differential roles of protease isoforms in the tumor microenvironment. Cancer Metastasis Reviews. PMID 31673830 DOI: 10.1007/s10555-019-09816-2   
2019 Mikl M, Hamburg A, Pilpel Y, Segal E. Dissecting splicing decisions and cell-to-cell variability with designed sequence libraries. Nature Communications. 10: 4572. PMID 31594945 DOI: 10.1038/s41467-019-12642-3   
2019 Clark MB, Wrzesinski T, Garcia AB, Hall NAL, Kleinman JE, Hyde T, Weinberger DR, Harrison PJ, Haerty W, Tunbridge EM. Long-read sequencing reveals the complex splicing profile of the psychiatric risk gene CACNA1C in human brain. Molecular Psychiatry. PMID 31695164 DOI: 10.1038/s41380-019-0583-1   
2019 Su Q, Lv X. Revealing new landscape of cardiovascular disease through circular RNA-miRNA-mRNA axis. Genomics. PMID 31626900 DOI: 10.1016/j.ygeno.2019.10.006   
2019 Barrows JK, Long DT. Cell-free transcription in Xenopus egg extract. The Journal of Biological Chemistry. PMID 31732562 DOI: 10.1074/jbc.RA119.011350   
2019 Al-Ashtal HA, Rubottom CM, Leeper TC, Berman AJ. The LARP1 La-Module recognizes both ends of TOP mRNAs. Rna Biology. 1-11. PMID 31601159 DOI: 10.1080/15476286.2019.1669404   
2019 Harris C, Xu W, Grassi L, Wang C, Markle A, Hardman C, Stevens R, Miro-Quesada G, Hatton D, Wang J. Identification and characterization of an IgG sequence variant with an 11 kDa heavy chain C-terminal extension using a combination of mass spectrometry and high-throughput sequencing analysis. Mabs. 1-12. PMID 31570042 DOI: 10.1080/19420862.2019.1667740   
2019 Aung-Htut MT, McIntosh CS, Ham KA, Pitout IL, Flynn LL, Greer K, Fletcher S, Wilton SD. Systematic Approach to Developing Splice Modulating Antisense Oligonucleotides. International Journal of Molecular Sciences. 20. PMID 31614438 DOI: 10.3390/ijms20205030   
2019 Lv X, Wang W, Han Z, Liu S, Yang W, Li M, Wang L, Song L. The Dicer from oyster Crassostrea gigas functions as an intracellular recognition molecule and effector in anti-viral immunity. Fish & Shellfish Immunology. PMID 31678182 DOI: 10.1016/j.fsi.2019.10.067   
2019 Aliouat A, Hatin I, Bertin P, François P, Stierlé V, Namy O, Salhi S, Jean-Jean O. Divergent effects of translation termination factor eRF3A and nonsense-mediated mRNA decay factor UPF1 on the expression of uORF carrying mRNAs and ribosome protein genes. Rna Biology. 1-13. PMID 31619139 DOI: 10.1080/15476286.2019.1674595   
2019 Nikolaou KC, Vatandaslar H, Meyer C, Schmid MW, Tuschl T, Stoffel M. The RNA-Binding Protein A1CF Regulates Hepatic Fructose and Glycerol Metabolism via Alternative RNA Splicing. Cell Reports. 29: 283-300.e8. PMID 31597092 DOI: 10.1016/j.celrep.2019.08.100   
2019 Zhang G, Kang Y, Feng X, Cui R, Guo Q, Ji X, Huang Y, Ma Y, Liu S, Shi G. LncRNAs down-regulate Myh1, Casr, and Mis18a expression in the Substantia Nigra of aged male rats. Aging. 11. PMID 31576812 DOI: 10.18632/aging.102321   
2019 Plotnikova O, Baranova A, Skoblov M. Comprehensive Analysis of Human microRNA-mRNA Interactome. Frontiers in Genetics. 10: 933. PMID 31649721 DOI: 10.3389/fgene.2019.00933   
2019 Kimball C, Powers K, Dustin J, Poirier V, Pellettieri J. The exon junction complex is required for stem and progenitor cell maintenance in planarians. Developmental Biology. PMID 31557470 DOI: 10.1016/j.ydbio.2019.09.010   
2019 Soulette CM, Oliverio O, Roy SW. On the function of trans-splicing: No evidence for widespread proteome diversification in trypanosomes. Genome Biology and Evolution. PMID 31599940 DOI: 10.1093/gbe/evz217   
2019 Mauger DM, Cabral BJ, Presnyak V, Su SV, Reid DW, Goodman B, Link K, Khatwani N, Reynders J, Moore MJ, McFadyen IJ. mRNA structure regulates protein expression through changes in functional half-life. Proceedings of the National Academy of Sciences of the United States of America. PMID 31712433 DOI: 10.1073/pnas.1908052116   
2019 Borišek J, Saltalamacchia A, Gallì A, Palermo G, Molteni E, Malcovati L, Magistrato A. Disclosing the Impact of Carcinogenic SF3b Mutations on Pre-mRNA Recognition Via All-Atom Simulations. Biomolecules. 9. PMID 31640290 DOI: 10.3390/biom9100633   
2019 Xiong P, Schneider RF, Hulsey CD, Meyer A, Franchini P. Conservation and novelty in the microRNA genomic landscape of hyperdiverse cichlid fishes. Scientific Reports. 9: 13848. PMID 31554838 DOI: 10.1038/s41598-019-50124-0   
2019 Chen SL, Rooney TJ, Hu AR, Beard HS, Garrett WM, Mangalath LM, Powers JJ, Cooper B, Zhang XN. Quantitative Proteomics Reveals a Role for SERINE/ARGININE-Rich 45 in Regulating RNA Metabolism and Modulating Transcriptional Suppression the ASAP Complex in . Frontiers in Plant Science. 10: 1116. PMID 31608083 DOI: 10.3389/fpls.2019.01116   
2019 Agosto LM, Gazzara MR, Radens CM, Sidoli S, Baeza J, Garcia BA, Lynch KW. Deep profiling and custom databases improve detection of proteoforms generated by alternative splicing. Genome Research. PMID 31727681 DOI: 10.1101/gr.248435.119   
2019 Lopez Soto EJ, Gandal MJ, Gonatopoulos-Pournatzis T, Heller EA, Luo D, Zheng S. Mechanisms of Neuronal Alternative Splicing and Strategies for Therapeutic Interventions. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 39: 8193-8199. PMID 31619487 DOI: 10.1523/JNEUROSCI.1149-19.2019   
2019 McCullough CG, Szelinger S, Belnap N, Ramsey K, Schrauwen I, Claasen AM, Burke LW, Siniard AL, Huentelman MJ, Narayanan V, Craig DW. Utilizing RNA and Outlier Analysis to Identify an Intronic Splice-Altering Variant in AP4S1 in a Sibling Pair with Progressive Spastic Paraplegia. Human Mutation. PMID 31660686 DOI: 10.1002/humu.23939   
2019 Shuai S, Suzuki H, Diaz-Navarro A, Nadeu F, Kumar SA, Gutierrez-Fernandez A, Delgado J, Pinyol M, López-Otín C, Puente XS, Taylor MD, Campo E, Stein LD. The U1 spliceosomal RNA is recurrently mutated in multiple cancers. Nature. PMID 31597163 DOI: 10.1038/s41586-019-1651-z   
2019 West KO, Scott HM, Torres-Odio S, West AP, Patrick KL, Watson RO. The Splicing Factor hnRNP M Is a Critical Regulator of Innate Immune Gene Expression in Macrophages. Cell Reports. 29: 1594-1609.e5. PMID 31693898 DOI: 10.1016/j.celrep.2019.09.078   
2019 Yang YZ, Ding S, Wang Y, Wang HC, Liu XY, Sun F, Xu C, Liu B, Tan BC. PPR20 is required for the cis-splicing of mitochondrial nad2 intron 3 and seed development in maize. Plant & Cell Physiology. PMID 31670803 DOI: 10.1093/pcp/pcz204   
2019 Berges N, Nawaz MS, Børresdatter Dahl T, Hagen L, Bjørås M, Laerdahl JK, Alseth I. Complex alternative splicing of human Endonuclease V mRNA, but evidence for only a single protein isoform. Plos One. 14: e0225081. PMID 31703097 DOI: 10.1371/journal.pone.0225081   
2019 Dai L, Wu Z, Xu C, Sahin O, Yaeger M, Plummer PJ, Zhang Q. The Rho-independent transcription terminator for the gene enhances expression of the major outer membrane protein and virulence in abortion induction. Infection and Immunity. PMID 31570559 DOI: 10.1128/IAI.00687-19   
2019 Zhang H, Tran V, Manna D, Ehrenkaufer G, Singh U. Functional Characterization of Entamoeba histolytica Argonaute Proteins Reveals a Repetitive DR-Rich Motif Region That Controls Nuclear Localization. Msphere. 4. PMID 31619501 DOI: 10.1128/mSphere.00580-19   
2019 Xiong W, Qu Y, Chen H, Qian J. Insight into long noncoding RNA-miRNA-mRNA axes in myocardial ischemia-reperfusion injury: the implications for mechanism and therapy. Epigenomics. PMID 31701757 DOI: 10.2217/epi-2019-0119   
2019 Wang D, Zhang S, Liu B. TAF5L functions as transcriptional coactivator of MITF involved in the immune response of the clam Meretrix petechialis. Fish & Shellfish Immunology. PMID 31743760 DOI: 10.1016/j.fsi.2019.11.039   
2019 Movassat M, Forouzmand E, Reese F, Hertel KJ. Exon Size and Sequence Conservation Improves Identification of Splice Altering Nucleotides. Rna (New York, N.Y.). PMID 31554659 DOI: 10.1261/rna.070987.119   
2019 Qian J, Yang J, Liu X, Chen Z, Yan X, Gu H, Xue Q, Zhou X, Gai L, Lu P, Shi Y, Yao N. Analysis of lncRNA-mRNA networks after MEK1/2 inhibition based on WGCNA in pancreatic ductal adenocarcinoma. Journal of Cellular Physiology. PMID 31583713 DOI: 10.1002/jcp.29255   
2019 Morinaga A, Ito J, Niimi T, Maturana AD. RBM20 Regulates CaV1.2 Surface Expression by Promoting Exon 9* Inclusion of in Neonatal Rat Cardiomyocytes. International Journal of Molecular Sciences. 20. PMID 31717392 DOI: 10.3390/ijms20225591   
2019 Zhou Q, Yu Q, Gong Y, Liu Z, Xu H, Wang Y, Shi Y. Construction of a lncRNA-miRNA-mRNA network to determine the regulatory roles of lncRNAs in psoriasis. Experimental and Therapeutic Medicine. 18: 4011-4021. PMID 31611939 DOI: 10.3892/etm.2019.8035   
2019 Gu J, Ma S, Zhang Y, Wang D, Cao S, Wang ZY. Genome-wide identification of Cassava Serine/Arginine-Rich proteins: Insights in alternative splicing of pre-mRNAs and respond to abiotic stress. Plant & Cell Physiology. PMID 31596482 DOI: 10.1093/pcp/pcz190   
2019 Monteuuis G, Wong JJL, Bailey CG, Schmitz U, Rasko JEJ. The changing paradigm of intron retention: regulation, ramifications and recipes. Nucleic Acids Research. PMID 31724706 DOI: 10.1093/nar/gkz1068   
2019 Torres-Fernández LA, Jux B, Bille M, Port Y, Schneider K, Geyer M, Mayer G, Kolanus W. The mRNA repressor TRIM71 cooperates with Nonsense-Mediated Decay factors to destabilize the mRNA of CDKN1A/p21. Nucleic Acids Research. PMID 31732746 DOI: 10.1093/nar/gkz1057   
2019 Wang YY, Xiong F, Ren QP, Wang XL. Regulation of flowering transition by alternative splicing: the role of the U2 auxiliary factor. Journal of Experimental Botany. PMID 31605606 DOI: 10.1093/jxb/erz416   
2019 Reynolds DJ, Hertel KJ. Ultra-deep sequencing reveals pre-mRNA splicing as a sequence driven high-fidelity process. Plos One. 14: e0223132. PMID 31581208 DOI: 10.1371/journal.pone.0223132   
2019 Wang J, Liu S, Shi J, Li J, Wang S, Liu H, Zhao S, Duan K, Pan X, Yi Z. The Role of miRNA in the Diagnosis, Prognosis, and Treatment of Osteosarcoma. Cancer Biotherapy & Radiopharmaceuticals. PMID 31674804 DOI: 10.1089/cbr.2019.2939   
2019 Steber HS, Gallante C, O'Brien S, Chiu PL, Mangone M. The 3' UTRome v2 resource for studying mRNA cleavage and polyadenylation, 3'-UTR biology, and miRNA targeting. Genome Research. PMID 31744903 DOI: 10.1101/gr.254839.119   
2019 Briese M, Haberman N, Sibley CR, Faraway R, Elser AS, Chakrabarti AM, Wang Z, König J, Perera D, Wickramasinghe VO, Venkitaraman AR, Luscombe NM, Saieva L, Pellizzoni L, Smith CWJ, et al. A systems view of spliceosomal assembly and branchpoints with iCLIP. Nature Structural & Molecular Biology. PMID 31570875 DOI: 10.1038/s41594-019-0300-4