| Year |
Citation |
Score |
| 2019 |
Lind AL, Lai YYY, Mostovoy Y, Holloway AK, Iannucci A, Mak ACY, Fondi M, Orlandini V, Eckalbar WL, Milan M, Rovatsos M, Kichigin IG, Makunin AI, Johnson Pokorná M, Altmanová M, et al. Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards. Nature Ecology & Evolution. 3: 1241-1252. PMID 31358948 DOI: 10.1038/S41559-019-0945-8 |
0.468 |
|
| 2018 |
Kostka D, Holloway AK, Pollard KS. Developmental loci harbor clusters of accelerated regions that evolved independently in ape lineages. Molecular Biology and Evolution. PMID 29897475 DOI: 10.1093/Molbev/Msy109 |
0.471 |
|
| 2016 |
Luna-Zurita L, Stirnimann CU, Glatt S, Kaynak BL, Thomas S, Baudin F, Samee MA, He D, Small EM, Mileikovsky M, Nagy A, Holloway AK, Pollard KS, Müller CW, Bruneau BG. Complex Interdependence Regulates Heterotypic Transcription Factor Distribution and Coordinates Cardiogenesis. Cell. PMID 26875865 DOI: 10.1016/J.Cell.2016.01.004 |
0.356 |
|
| 2015 |
Holloway AK, Bruneau BG, Sukonnik T, Rubenstein JL, Pollard KS. Accelerated evolution of enhancer hotspots in the mammal ancestor. Molecular Biology and Evolution. PMID 26715627 DOI: 10.1093/Molbev/Msv344 |
0.479 |
|
| 2015 |
Kostka D, Friedrich T, Holloway AK, Pollard KS. motifDiverge: a model for assessing the statistical significance of gene regulatory motif divergence between two DNA sequences. Statistics and Its Interface. 8: 463-476. PMID 26709360 DOI: 10.4310/Sii.2015.V8.N4.A6 |
0.449 |
|
| 2014 |
Williams AG, Thomas S, Wyman SK, Holloway AK. RNA-seq Data: Challenges in and Recommendations for Experimental Design and Analysis. Current Protocols in Human Genetics / Editorial Board, Jonathan L. Haines ... [Et Al.]. 83: 11.13.1-11.13.20. PMID 25271838 DOI: 10.1002/0471142905.Hg1113S83 |
0.334 |
|
| 2014 |
Thomas S, Underwood JG, Tseng E, Holloway AK. Long-read sequencing of chicken transcripts and identification of new transcript isoforms. Plos One. 9: e94650. PMID 24736250 DOI: 10.1371/Journal.Pone.0094650 |
0.438 |
|
| 2013 |
Smith RP, Riesenfeld SJ, Holloway AK, Li Q, Murphy KK, Feliciano NM, Orecchia L, Oksenberg N, Pollard KS, Ahituv N. A compact, in vivo screen of all 6-mers reveals drivers of tissue-specific expression and guides synthetic regulatory element design. Genome Biology. 14: R72. PMID 23867016 DOI: 10.1186/Gb-2013-14-7-R72 |
0.376 |
|
| 2013 |
Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, ... ... Holloway AK, et al. The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage. Genome Biology. 14: R28. PMID 23537068 DOI: 10.1186/Gb-2013-14-3-R28 |
0.501 |
|
| 2012 |
Wamstad JA, Alexander JM, Truty RM, Shrikumar A, Li F, Eilertson KE, Ding H, Wylie JN, Pico AR, Capra JA, Erwin G, Kattman SJ, Keller GM, Srivastava D, Levine SS, ... ... Holloway AK, et al. Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage. Cell. 151: 206-20. PMID 22981692 DOI: 10.1016/J.Cell.2012.07.035 |
0.347 |
|
| 2012 |
Langley CH, Stevens K, Cardeno C, Lee YC, Schrider DR, Pool JE, Langley SA, Suarez C, Corbett-Detig RB, Kolaczkowski B, Fang S, Nista PM, Holloway AK, Kern AD, Dewey CN, et al. Genomic variation in natural populations of Drosophila melanogaster. Genetics. 192: 533-98. PMID 22673804 DOI: 10.1534/Genetics.112.142018 |
0.76 |
|
| 2011 |
Lindblad-Toh K, Garber M, Zuk O, Lin MF, Parker BJ, Washietl S, Kheradpour P, Ernst J, Jordan G, Mauceli E, Ward LD, Lowe CB, Holloway AK, Clamp M, Gnerre S, et al. A high-resolution map of human evolutionary constraint using 29 mammals. Nature. 478: 476-82. PMID 21993624 DOI: 10.1038/Nature10530 |
0.422 |
|
| 2011 |
Roach JC, Glusman G, Hubley R, Montsaroff SZ, Holloway AK, Mauldin DE, Srivastava D, Garg V, Pollard KS, Galas DJ, Hood L, Smit AF. Chromosomal haplotypes by genetic phasing of human families. American Journal of Human Genetics. 89: 382-97. PMID 21855840 DOI: 10.1016/J.Ajhg.2011.07.023 |
0.348 |
|
| 2011 |
He BZ, Holloway AK, Maerkl SJ, Kreitman M. Does positive selection drive transcription factor binding site turnover? A test with Drosophila cis-regulatory modules. Plos Genetics. 7: e1002053. PMID 21572512 DOI: 10.1371/Journal.Pgen.1002053 |
0.366 |
|
| 2011 |
Lambert N, Lambot MA, Bilheu A, Albert V, Englert Y, Libert F, Noel JC, Sotiriou C, Holloway AK, Pollard KS, Detours V, Vanderhaeghen P. Genes expressed in specific areas of the human fetal cerebral cortex display distinct patterns of evolution. Plos One. 6: e17753. PMID 21445258 DOI: 10.1371/Journal.Pone.0017753 |
0.396 |
|
| 2011 |
Kolaczkowski B, Kern AD, Holloway AK, Begun DJ. Genomic differentiation between temperate and tropical Australian populations of Drosophila melanogaster. Genetics. 187: 245-60. PMID 21059887 DOI: 10.1534/Genetics.110.123059 |
0.75 |
|
| 2010 |
Lawniczak MK, Emrich SJ, Holloway AK, Regier AP, Olson M, White B, Redmond S, Fulton L, Appelbaum E, Godfrey J, Farmer C, Chinwalla A, Yang SP, Minx P, Nelson J, et al. Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences. Science (New York, N.Y.). 330: 512-4. PMID 20966253 DOI: 10.1126/Science.1195755 |
0.725 |
|
| 2010 |
Rahbari R, Holloway AK, He M, Clark OH. Parathyroid neoplasms have distinct microRNA gene expression profile Journal of the American College of Surgeons. 211: S122. DOI: 10.1016/J.Jamcollsurg.2010.06.324 |
0.348 |
|
| 2008 |
Li YF, Costello JC, Holloway AK, Hahn MW. "Reverse ecology" and the power of population genomics. Evolution; International Journal of Organic Evolution. 62: 2984-94. PMID 18752601 DOI: 10.1111/J.1558-5646.2008.00486.X |
0.461 |
|
| 2008 |
Lawniczak MK, Holloway AK, Begun DJ, Jones CD. Genomic analysis of the relationship between gene expression variation and DNA polymorphism in Drosophila simulans. Genome Biology. 9: R125. PMID 18700012 DOI: 10.1186/Gb-2008-9-8-R125 |
0.772 |
|
| 2008 |
Holloway AK, Begun DJ, Siepel A, Pollard KS. Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster. Genome Research. 18: 1592-601. PMID 18583644 DOI: 10.1101/Gr.077131.108 |
0.679 |
|
| 2007 |
Levine MT, Holloway AK, Arshad U, Begun DJ. Pervasive and largely lineage-specific adaptive protein evolution in the dosage compensation complex of Drosophila melanogaster. Genetics. 177: 1959-62. PMID 18039888 DOI: 10.1534/Genetics.107.079459 |
0.744 |
|
| 2007 |
Begun DJ, Holloway AK, Stevens K, Hillier LW, Poh YP, Hahn MW, Nista PM, Jones CD, Kern AD, Dewey CN, Pachter L, Myers E, Langley CH. Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. Plos Biology. 5: e310. PMID 17988176 DOI: 10.1371/Journal.Pbio.0050310 |
0.776 |
|
| 2007 |
Holloway AK, Begun DJ. Rampant adaptive evolution in regions of proteins with unknown function in Drosophila simulans. Plos One. 2: e1113. PMID 17971876 DOI: 10.1371/Journal.Pone.0001113 |
0.588 |
|
| 2007 |
Holloway AK, Lawniczak MK, Mezey JG, Begun DJ, Jones CD. Adaptive gene expression divergence inferred from population genomics. Plos Genetics. 3: 2007-13. PMID 17967066 DOI: 10.1371/Journal.Pgen.0030187 |
0.784 |
|
| 2007 |
Holloway AK, Palzkill T, Bull JJ. Experimental evolution of gene duplicates in a bacterial plasmid model. Journal of Molecular Evolution. 64: 215-22. PMID 17211548 DOI: 10.1007/S00239-006-0087-X |
0.522 |
|
| 2007 |
Lapp H, Bala S, Balhoff JP, Bouck A, Goto N, Holder M, Holland R, Holloway A, Katayama T, Lewis PO, Mackey AJ, Osborne BI, Piel WH, Pond SLK, Poon AFY, et al. The 2006 NESCent phyloinformatics hackathon: A field report Evolutionary Bioinformatics. 3: 287-296. DOI: 10.4137/Ebo.S0 |
0.693 |
|
| 2006 |
Holloway AK, Cannatella DC, Gerhardt HC, Hillis DM. Polyploids with different origins and ancestors form a single sexual polyploid species. The American Naturalist. 167: E88-101. PMID 16670990 DOI: 10.1086/501079 |
0.546 |
|
| 2006 |
Begun DJ, Lindfors HA, Thompson ME, Holloway AK. Recently evolved genes identified from Drosophila yakuba and D. erecta accessory gland expressed sequence tags. Genetics. 172: 1675-81. PMID 16361246 DOI: 10.1534/Genetics.105.050336 |
0.682 |
|
| 2004 |
Holloway AK, Begun DJ. Molecular evolution and population genetics of duplicated accessory gland protein genes in Drosophila. Molecular Biology and Evolution. 21: 1625-8. PMID 15215320 DOI: 10.1093/Molbev/Msh195 |
0.674 |
|
| 2001 |
Holder MT, Anderson JA, Holloway AK. Difficulties in detecting hybridization. Systematic Biology. 50: 978-82. PMID 12116644 DOI: 10.1080/106351501753462911 |
0.607 |
|
| 2001 |
Antolin MF, Van Horne B, Berger J, Holloway AK, Roach JL, Weeks J. Effective population size and genetic structure of a Piute ground squirrel (Spermophilus mollis) population Canadian Journal of Zoology. 79: 26-34. DOI: 10.1139/Z00-170 |
0.569 |
|
| 2000 |
Holloway AK, Strand MR, Black WC, Antolin MF. Linkage analysis of sex determination in Bracon sp. near hebetor (Hymenoptera: Braconidae). Genetics. 154: 205-12. PMID 10628981 |
0.542 |
|
| 1999 |
Holloway AK, Heimpel GE, Strand MR, Antolin MF. Survival of diploid males in Bracon sp. near hebetor (Hymenoptera: Braconidae) Annals of the Entomological Society of America. 92: 110-116. DOI: 10.1093/Aesa/92.1.110 |
0.547 |
|
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