| Year |
Citation |
Score |
| 2023 |
Kornienko AE, Nizhynska V, Molla Morales A, Pisupati R, Nordborg M. Population-level annotation of lncRNAs in Arabidopsis reveals extensive expression variation associated with transposable element-like silencing. The Plant Cell. 36: 85-111. PMID 37683092 DOI: 10.1093/plcell/koad233 |
0.337 |
|
| 2023 |
Pisupati R, Nizhynska V, Mollá Morales A, Nordborg M. On the causes of gene-body methylation variation in Arabidopsis thaliana. Plos Genetics. 19: e1010728. PMID 37141384 DOI: 10.1371/journal.pgen.1010728 |
0.315 |
|
| 2023 |
Jaegle B, Pisupati R, Soto-Jiménez LM, Burns R, Rabanal FA, Nordborg M. Extensive sequence duplication in Arabidopsis revealed by pseudo-heterozygosity. Genome Biology. 24: 44. PMID 36895055 DOI: 10.1186/s13059-023-02875-3 |
0.435 |
|
| 2022 |
Sasaki E, Gunis J, Reichardt-Gomez I, Nizhynska V, Nordborg M. Conditional GWAS of non-CG transposon methylation in Arabidopsis thaliana reveals major polymorphisms in five genes. Plos Genetics. 18: e1010345. PMID 36084135 DOI: 10.1371/journal.pgen.1010345 |
0.322 |
|
| 2021 |
Burns R, Mandáková T, Gunis J, Soto-Jiménez LM, Liu C, Lysak MA, Novikova PY, Nordborg M. Gradual evolution of allopolyploidy in Arabidopsis suecica. Nature Ecology & Evolution. PMID 34413506 DOI: 10.1038/s41559-021-01525-w |
0.377 |
|
| 2021 |
Lopez-Arboleda WA, Reinert S, Nordborg M, Korte A. Global genetic heterogeneity in adaptive traits. Molecular Biology and Evolution. PMID 34240182 DOI: 10.1093/molbev/msab208 |
0.431 |
|
| 2021 |
Sasaki E, Köcher T, Filiault DL, Nordborg M. Revisiting a GWAS peak in Arabidopsis thaliana reveals possible confounding by genetic heterogeneity. Heredity. PMID 34226672 DOI: 10.1038/s41437-021-00456-3 |
0.446 |
|
| 2020 |
Tsuchimatsu T, Kakui H, Yamazaki M, Marona C, Tsutsui H, Hedhly A, Meng D, Sato Y, Städler T, Grossniklaus U, Kanaoka MM, Lenhard M, Nordborg M, Shimizu KK. Adaptive reduction of male gamete number in the selfing plant Arabidopsis thaliana. Nature Communications. 11: 2885. PMID 32514036 DOI: 10.1038/S41467-020-16679-7 |
0.431 |
|
| 2019 |
Sasaki E, Kawakatsu T, Ecker JR, Nordborg M. Common alleles of CMT2 and NRPE1 are major determinants of CHH methylation variation in Arabidopsis thaliana. Plos Genetics. 15: e1008492. PMID 31887137 DOI: 10.1371/Journal.Pgen.1008492 |
0.42 |
|
| 2019 |
Aköz G, Nordborg M. The Aquilegia genome reveals a hybrid origin of core eudicots. Genome Biology. 20: 256. PMID 31779695 DOI: 10.1186/S13059-019-1888-8 |
0.472 |
|
| 2019 |
Togninalli M, Seren Ü, Freudenthal JA, Monroe JG, Meng D, Nordborg M, Weigel D, Borgwardt K, Korte A, Grimm DG. AraPheno and the AraGWAS Catalog 2020: a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana. Nucleic Acids Research. PMID 31642487 DOI: 10.1093/Nar/Gkz925 |
0.539 |
|
| 2019 |
Duszynska D, Vilhjalmsson B, Castillo Bravo R, Swamidatta S, Juenger TE, Donoghue MTA, Comte A, Nordborg M, Sharbel TF, Brychkova G, McKeown PC, Spillane C. Transgenerational effects of inter-ploidy cross direction on reproduction and F2 seed development of Arabidopsis thaliana F1 hybrid triploids. Plant Reproduction. PMID 30903284 DOI: 10.1007/S00497-019-00369-6 |
0.622 |
|
| 2019 |
Barton N, Hermisson J, Nordborg M. Why structure matters. Elife. 8. PMID 30895925 DOI: 10.7554/Elife.45380 |
0.47 |
|
| 2018 |
Nagler M, Nägele T, Gilli C, Fragner L, Korte A, Platzer A, Farlow A, Nordborg M, Weckwerth W. Eco-Metabolomics and Metabolic Modeling: Making the Leap From Model Systems in the Lab to Native Populations in the Field. Frontiers in Plant Science. 9: 1556. PMID 30459786 DOI: 10.3389/Fpls.2018.01556 |
0.422 |
|
| 2018 |
Filiault DL, Ballerini ES, Mandáková T, Aköz G, Derieg NJ, Schmutz J, Jenkins J, Grimwood J, Shu S, Hayes RD, Hellsten U, Barry K, Yan J, Mihaltcheva S, Karafiátová M, ... ... Nordborg M, et al. The a genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history. Elife. 7. PMID 30325307 DOI: 10.7554/Elife.36426 |
0.455 |
|
| 2018 |
Sasaki E, Frommlet F, Nordborg M. GWAS with Heterogeneous Data: Estimating the Fraction of Phenotypic Variation Mediated by Gene Expression Data. G3 (Bethesda, Md.). PMID 30068524 DOI: 10.1534/G3.118.200571 |
0.449 |
|
| 2018 |
Nordborg M, Barton NH, Hermisson J. Decision letter: Polygenic adaptation on height is overestimated due to uncorrected stratification in genome-wide association studies Elife. DOI: 10.7554/Elife.39702.041 |
0.404 |
|
| 2018 |
Nordborg M, Tessmar K. Decision letter: Decoupled maternal and zygotic genetic effects shape the evolution of development Elife. DOI: 10.7554/Elife.37143.018 |
0.327 |
|
| 2018 |
Filiault DL, Ballerini ES, Mandáková T, Aköz G, Derieg NJ, Schmutz J, Jenkins J, Grimwood J, Shu S, Hayes RD, Hellsten U, Barry K, Yan J, Mihaltcheva S, Karafiátová M, ... ... Nordborg M, et al. Author response: The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history Elife. DOI: 10.7554/Elife.36426.050 |
0.425 |
|
| 2017 |
Kerdaffrec E, Nordborg M. The maternal environment interacts with genetic variation in regulating seed dormancy in Swedish Arabidopsis thaliana. Plos One. 12: e0190242. PMID 29281703 DOI: 10.1371/Journal.Pone.0190242 |
0.464 |
|
| 2017 |
Pisupati R, Reichardt I, Seren Ü, Korte P, Nizhynska V, Kerdaffrec E, Uzunova K, Rabanal FA, Filiault DL, Nordborg M. Verification of Arabidopsis stock collections using SNPmatch, a tool for genotyping high-plexed samples. Scientific Data. 4: 170184. PMID 29257129 DOI: 10.1038/Sdata.2017.184 |
0.38 |
|
| 2017 |
Svardal H, Jasinska AJ, Apetrei C, Coppola G, Huang Y, Schmitt CA, Jacquelin B, Ramensky V, Müller-Trutwin M, Antonio M, Weinstock G, Grobler JP, Dewar K, Wilson RK, Turner TR, ... ... Nordborg M, et al. Ancient hybridization and strong adaptation to viruses across African vervet monkey populations. Nature Genetics. PMID 29083404 DOI: 10.1038/Ng.3980 |
0.408 |
|
| 2017 |
Togninalli M, Seren Ü, Meng D, Fitz J, Nordborg M, Weigel D, Borgwardt K, Korte A, Grimm DG. The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog. Nucleic Acids Research. PMID 29059333 DOI: 10.1093/Nar/Gkx954 |
0.534 |
|
| 2017 |
Tsuchimatsu T, Goubet PM, Gallina S, Holl AC, Fobis-Loisy I, Bergès H, Marande W, Prat E, Meng D, Long Q, Platzer A, Nordborg M, Vekemans X, Castric V. Patterns of polymorphism at the self-incompatibility locus in 1,083 Arabidopsis thaliana genomes. Molecular Biology and Evolution. PMID 28379456 DOI: 10.1093/Molbev/Msx122 |
0.456 |
|
| 2017 |
Rabanal FA, Nizhynska V, Mandáková T, Novikova PY, Lysak MA, Mott R, Nordborg M. Unstable Inheritance of 45S rRNA Genes in Arabidopsis thaliana. G3 (Bethesda, Md.). PMID 28188182 DOI: 10.1534/G3.117.040204 |
0.54 |
|
| 2017 |
Lee CR, Svardal H, Farlow A, Exposito-Alonso M, Ding W, Novikova P, Alonso-Blanco C, Weigel D, Nordborg M. On the post-glacial spread of human commensal Arabidopsis thaliana. Nature Communications. 8: 14458. PMID 28181519 DOI: 10.1038/Ncomms14458 |
0.631 |
|
| 2017 |
Imprialou M, Kahles A, Steffen JG, Osborne EJ, Gan X, Lempe J, Bhomra A, Belfield E, Visscher A, Greenhalgh R, Harberd NP, Goram R, Hein J, Robert-Seilaniantz A, Jones J, ... ... Nordborg M, et al. Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits. Genetics. PMID 28179367 DOI: 10.1534/Genetics.116.192823 |
0.529 |
|
| 2017 |
Yu Novikova P, Tsuchimatsu T, Simon S, Nizhynska V, Voronin V, Burns R, Fedorenko OM, Holm S, Säll T, Prat E, Marande W, Castric V, Nordborg M. Genome sequencing reveals the origin of the allotetraploid Arabidopsis suecica. Molecular Biology and Evolution. PMID 28087777 DOI: 10.1093/Molbev/Msw299 |
0.437 |
|
| 2016 |
Kerdaffrec E, Filiault DL, Korte A, Sasaki E, Nizhynska V, Seren Ü, Nordborg M. Multiple alleles at a single locus control seed dormancy in Swedish Arabidopsis. Elife. 5. PMID 27966430 DOI: 10.7554/Elife.22502 |
0.529 |
|
| 2016 |
Seren Ü, Grimm D, Fitz J, Weigel D, Nordborg M, Borgwardt K, Korte A. AraPheno: a public database for Arabidopsis thaliana phenotypes. Nucleic Acids Research. PMID 27924043 DOI: 10.1093/Nar/Gkw986 |
0.533 |
|
| 2016 |
Watson JM, Platzer A, Kazda A, Akimcheva S, Valuchova S, Nizhynska V, Nordborg M, Riha K. Germline replications and somatic mutation accumulation are independent of vegetative life span in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. PMID 27729523 DOI: 10.1073/Pnas.1609686113 |
0.304 |
|
| 2016 |
Horton MW, Willems G, Sasaki E, Koornneef M, Nordborg M. The genetic architecture of freezing tolerance varies across the range of Arabidopsis thaliana. Plant, Cell & Environment. PMID 27487257 DOI: 10.1111/Pce.12812 |
0.47 |
|
| 2016 |
Fransz P, Linc G, Lee CR, Aflitos SA, Lasky JR, Toomajian C, Hoda A, Peters J, van Dam P, Ji X, Kuzak M, Gerats T, Schubert I, Schneeberger K, Colot V, ... ... Nordborg M, et al. Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. PMID 27436134 DOI: 10.1111/Tpj.13262 |
0.823 |
|
| 2016 |
Novikova PY, Hohmann N, Nizhynska V, Tsuchimatsu T, Ali J, Muir G, Guggisberg A, Paape T, Schmid K, Fedorenko OM, Holm S, Säll T, Schlötterer C, Marhold K, Widmer A, ... ... Nordborg M, et al. Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism. Nature Genetics. PMID 27428747 DOI: 10.1038/Ng.3617 |
0.387 |
|
| 2016 |
Kawakatsu T, Huang SC, Jupe F, Sasaki E, Schmitz RJ, Urich MA, Castanon R, Nery JR, Barragan C, He Y, Chen H, Dubin M, Lee CR, Wang C, Bemm F, ... ... Nordborg M, et al. Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions. Cell. 166: 492-505. PMID 27419873 DOI: 10.1016/J.Cell.2016.06.044 |
0.693 |
|
| 2016 |
Meng D, Dubin M, Zhang P, Osborne EJ, Stegle O, Clark RM, Nordborg M. Limited Contribution of DNA Methylation Variation to Expression Regulation in Arabidopsis thaliana. Plos Genetics. 12: e1006141. PMID 27398721 DOI: 10.1371/Journal.Pgen.1006141 |
0.404 |
|
| 2016 |
Kerdaffrec E, Filiault DL, Korte A, Sasaki E, Nizhynska V, Seren Ü, Nordborg M. Author response: Multiple alleles at a single locus control seed dormancy in Swedish Arabidopsis Elife. DOI: 10.7554/Elife.22502.029 |
0.338 |
|
| 2015 |
Sasaki E, Zhang P, Atwell S, Meng D, Nordborg M. "Missing" G x E Variation Controls Flowering Time in Arabidopsis thaliana. Plos Genetics. 11: e1005597. PMID 26473359 DOI: 10.1371/Journal.Pgen.1005597 |
0.433 |
|
| 2015 |
Provart NJ, Alonso J, Assmann SM, Bergmann D, Brady SM, Brkljacic J, Browse J, Chapple C, Colot V, Cutler S, Dangl J, Ehrhardt D, Friesner JD, Frommer WB, Grotewold E, ... ... Nordborg M, et al. 50 years of Arabidopsis research: highlights and future directions. The New Phytologist. PMID 26465351 DOI: 10.1111/Nph.13687 |
0.413 |
|
| 2015 |
Weigel D, Nordborg M. Population Genomics for Understanding Adaptation in Wild Plant Species. Annual Review of Genetics. PMID 26436459 DOI: 10.1146/Annurev-Genet-120213-092110 |
0.489 |
|
| 2015 |
Warren WC, Jasinska AJ, Garcia-Perez R, Svardal H, Tomlinson C, Rocchi M, Archidiacono N, Capozzi O, Minx P, Montague MJ, Kyung K, Hillier LW, Kremitzki M, Graves T, Chiang C, ... ... Nordborg M, et al. The genome of the vervet (Chlorocebus aethiops sabaeus). Genome Research. PMID 26377836 DOI: 10.1101/Gr.192922.115 |
0.522 |
|
| 2015 |
Farlow A, Long H, Arnoux S, Sung W, Doak TG, Nordborg M, Lynch M. The Spontaneous Mutation Rate in the Fission Yeast Schizosaccharomyces pombe. Genetics. 201: 737-44. PMID 26265703 DOI: 10.1534/Genetics.115.177329 |
0.314 |
|
| 2015 |
Dubin MJ, Zhang P, Meng D, Remigereau MS, Osborne EJ, Paolo Casale F, Drewe P, Kahles A, Jean G, Vilhjálmsson B, Jagoda J, Irez S, Voronin V, Song Q, Long Q, ... ... Nordborg M, et al. DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation. Elife. 4: e05255. PMID 25939354 DOI: 10.7554/Elife.05255 |
0.645 |
|
| 2015 |
Fulcher N, Teubenbacher A, Kerdaffrec E, Farlow A, Nordborg M, Riha K. Genetic architecture of natural variation of telomere length in Arabidopsis thaliana. Genetics. 199: 625-35. PMID 25488978 DOI: 10.1534/Genetics.114.172163 |
0.472 |
|
| 2015 |
Dubin MJ, Zhang P, Meng D, Remigereau M, Osborne EJ, Casale FP, Drewe P, Kahles A, Jean G, Vilhjálmsson B, Jagoda J, Irez S, Voronin V, Song Q, Long Q, ... ... Nordborg M, et al. Author response: DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation Elife. DOI: 10.7554/Elife.05255.031 |
0.642 |
|
| 2014 |
Horton MW, Bodenhausen N, Beilsmith K, Meng D, Muegge BD, Subramanian S, Vetter MM, Vilhjálmsson BJ, Nordborg M, Gordon JI, Bergelson J. Genome-wide association study of Arabidopsis thaliana leaf microbial community. Nature Communications. 5: 5320. PMID 25382143 DOI: 10.1038/Ncomms6320 |
0.681 |
|
| 2014 |
Huber CD, Nordborg M, Hermisson J, Hellmann I. Keeping it local: evidence for positive selection in Swedish Arabidopsis thaliana. Molecular Biology and Evolution. 31: 3026-39. PMID 25158800 DOI: 10.1093/Molbev/Msu247 |
0.366 |
|
| 2014 |
Li P, Filiault D, Box MS, Kerdaffrec E, van Oosterhout C, Wilczek AM, Schmitt J, McMullan M, Bergelson J, Nordborg M, Dean C. Multiple FLC haplotypes defined by independent cis-regulatory variation underpin life history diversity in Arabidopsis thaliana. Genes & Development. 28: 1635-40. PMID 25035417 DOI: 10.1101/Gad.245993.114 |
0.492 |
|
| 2014 |
Juraniec M, Lequeux H, Hermans C, Willems G, Nordborg M, Schneeberger K, Salis P, Vromant M, Lutts S, Verbruggen N. Towards the discovery of novel genetic component involved in stress resistance in Arabidopsis thaliana. The New Phytologist. 201: 810-24. PMID 24134393 DOI: 10.1111/Nph.12554 |
0.334 |
|
| 2013 |
Long Q, Rabanal FA, Meng D, Huber CD, Farlow A, Platzer A, Zhang Q, Vilhjálmsson BJ, Korte A, Nizhynska V, Voronin V, Korte P, Sedman L, Mandáková T, Lysak MA, ... ... Nordborg M, et al. Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden. Nature Genetics. 45: 884-90. PMID 23793030 DOI: 10.1038/Ng.2678 |
0.738 |
|
| 2013 |
Slotte T, Hazzouri KM, Ågren JA, Koenig D, Maumus F, Guo YL, Steige K, Platts AE, Escobar JS, Newman LK, Wang W, Mandáková T, Vello E, Smith LM, Henz SR, ... ... Nordborg M, et al. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nature Genetics. 45: 831-5. PMID 23749190 DOI: 10.1038/Ng.2669 |
0.749 |
|
| 2013 |
Debieu M, Tang C, Stich B, Sikosek T, Effgen S, Josephs E, Schmitt J, Nordborg M, Koornneef M, de Meaux J. Co-variation between seed dormancy, growth rate and flowering time changes with latitude in Arabidopsis thaliana. Plos One. 8: e61075. PMID 23717385 DOI: 10.1371/Journal.Pone.0061075 |
0.795 |
|
| 2013 |
Beleza S, Johnson NA, Candille SI, Absher DM, Coram MA, Lopes J, Campos J, Araújo II, Anderson TM, Vilhjálmsson BJ, Nordborg M, Correia E Silva A, Shriver MD, Rocha J, Barsh GS, et al. Genetic architecture of skin and eye color in an African-European admixed population. Plos Genetics. 9: e1003372. PMID 23555287 DOI: 10.1371/Journal.Pgen.1003372 |
0.669 |
|
| 2013 |
Long Q, Zhang Q, Vilhjalmsson BJ, Forai P, Seren Ü, Nordborg M. JAWAMix5: an out-of-core HDF5-based java implementation of whole-genome association studies using mixed models. Bioinformatics (Oxford, England). 29: 1220-2. PMID 23479353 DOI: 10.1093/Bioinformatics/Btt122 |
0.654 |
|
| 2013 |
Vilhjálmsson BJ, Nordborg M. The nature of confounding in genome-wide association studies. Nature Reviews. Genetics. 14: 1-2. PMID 23165185 DOI: 10.1038/Nrg3382 |
0.729 |
|
| 2012 |
Seren Ü, Vilhjálmsson BJ, Horton MW, Meng D, Forai P, Huang YS, Long Q, Segura V, Nordborg M. GWAPP: a web application for genome-wide association mapping in Arabidopsis. The Plant Cell. 24: 4793-805. PMID 23277364 DOI: 10.1105/Tpc.112.108068 |
0.756 |
|
| 2012 |
Chao DY, Silva A, Baxter I, Huang YS, Nordborg M, Danku J, Lahner B, Yakubova E, Salt DE. Genome-wide association studies identify heavy metal ATPase3 as the primary determinant of natural variation in leaf cadmium in Arabidopsis thaliana. Plos Genetics. 8: e1002923. PMID 22969436 DOI: 10.1371/Journal.Pgen.1002923 |
0.418 |
|
| 2012 |
Korte A, Vilhjálmsson BJ, Segura V, Platt A, Long Q, Nordborg M. A mixed-model approach for genome-wide association studies of correlated traits in structured populations. Nature Genetics. 44: 1066-71. PMID 22902788 DOI: 10.1038/Ng.2376 |
0.743 |
|
| 2012 |
Segura V, Vilhjálmsson BJ, Platt A, Korte A, Seren Ü, Long Q, Nordborg M. An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations. Nature Genetics. 44: 825-30. PMID 22706313 DOI: 10.1038/Ng.2314 |
0.739 |
|
| 2012 |
Horton MW, Hancock AM, Huang YS, Toomajian C, Atwell S, Auton A, Muliyati NW, Platt A, Sperone FG, Vilhjálmsson BJ, Nordborg M, Borevitz JO, Bergelson J. Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel. Nature Genetics. 44: 212-6. PMID 22231484 DOI: 10.1038/Ng.1042 |
0.845 |
|
| 2011 |
Fournier-Level A, Korte A, Cooper MD, Nordborg M, Schmitt J, Wilczek AM. A map of local adaptation in Arabidopsis thaliana. Science (New York, N.Y.). 334: 86-9. PMID 21980109 DOI: 10.1126/Science.1209271 |
0.49 |
|
| 2011 |
Wolff P, Weinhofer I, Seguin J, Roszak P, Beisel C, Donoghue MT, Spillane C, Nordborg M, Rehmsmeier M, Köhler C. High-resolution analysis of parent-of-origin allelic expression in the Arabidopsis Endosperm. Plos Genetics. 7: e1002126. PMID 21698132 DOI: 10.1371/Journal.Pgen.1002126 |
0.411 |
|
| 2011 |
Strange A, Li P, Lister C, Anderson J, Warthmann N, Shindo C, Irwin J, Nordborg M, Dean C. Major-effect alleles at relatively few loci underlie distinct vernalization and flowering variation in Arabidopsis accessions. Plos One. 6: e19949. PMID 21625501 DOI: 10.1371/Journal.Pone.0019949 |
0.509 |
|
| 2011 |
Huang YS, Horton M, Vilhjálmsson BJ, Seren U, Meng D, Meyer C, Ali Amer M, Borevitz JO, Bergelson J, Nordborg M. Analysis and visualization of Arabidopsis thaliana GWAS using web 2.0 technologies. Database : the Journal of Biological Databases and Curation. 2011: bar014. PMID 21609965 DOI: 10.1093/Database/Bar014 |
0.688 |
|
| 2011 |
Anastasio AE, Platt A, Horton M, Grotewold E, Scholl R, Borevitz JO, Nordborg M, Bergelson J. Source verification of mis-identified Arabidopsis thaliana accessions. The Plant Journal : For Cell and Molecular Biology. 67: 554-66. PMID 21481029 DOI: 10.1111/J.1365-313X.2011.04606.X |
0.407 |
|
| 2011 |
Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J, Gundlach H, Haberer G, Hollister JD, Ossowski S, Ottilar RP, Salamov AA, ... ... Nordborg M, et al. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nature Genetics. 43: 476-81. PMID 21478890 DOI: 10.1038/Ng.807 |
0.746 |
|
| 2011 |
Long Q, Jeffares DC, Zhang Q, Ye K, Nizhynska V, Ning Z, Tyler-Smith C, Nordborg M. PoolHap: inferring haplotype frequencies from pooled samples by next generation sequencing. Plos One. 6: e15292. PMID 21264334 DOI: 10.1371/Journal.Pone.0015292 |
0.446 |
|
| 2011 |
Keurentjes JJB, Willems G, Van Eeuwijk F, Nordborg M, Koornneef M. A comparison of population types used for QTL mapping in Arabidopsis thaliana Plant Genetic Resources: Characterisation and Utilisation. 9: 185-188. DOI: 10.1017/S1479262111000086 |
0.506 |
|
| 2010 |
Baxter I, Brazelton JN, Yu D, Huang YS, Lahner B, Yakubova E, Li Y, Bergelson J, Borevitz JO, Nordborg M, Vitek O, Salt DE. A coastal cline in sodium accumulation in Arabidopsis thaliana is driven by natural variation of the sodium transporter AtHKT1;1. Plos Genetics. 6: e1001193. PMID 21085628 DOI: 10.1371/Journal.Pgen.1001193 |
0.507 |
|
| 2010 |
Li Y, Huang Y, Bergelson J, Nordborg M, Borevitz JO. Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 107: 21199-204. PMID 21078970 DOI: 10.1073/Pnas.1007431107 |
0.507 |
|
| 2010 |
Platt A, Vilhjálmsson BJ, Nordborg M. Conditions under which genome-wide association studies will be positively misleading. Genetics. 186: 1045-52. PMID 20813880 DOI: 10.1534/Genetics.110.121665 |
0.752 |
|
| 2010 |
Todesco M, Balasubramanian S, Hu TT, Traw MB, Horton M, Epple P, Kuhns C, Sureshkumar S, Schwartz C, Lanz C, Laitinen RA, Huang Y, Chory J, Lipka V, Borevitz JO, ... ... Nordborg M, et al. Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana. Nature. 465: 632-6. PMID 20520716 DOI: 10.1038/Nature09083 |
0.758 |
|
| 2010 |
Nemri A, Atwell S, Tarone AM, Huang YS, Zhao K, Studholme DJ, Nordborg M, Jones JD. Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping. Proceedings of the National Academy of Sciences of the United States of America. 107: 10302-7. PMID 20479233 DOI: 10.1073/Pnas.0913160107 |
0.752 |
|
| 2010 |
Brachi B, Faure N, Horton M, Flahauw E, Vazquez A, Nordborg M, Bergelson J, Cuguen J, Roux F. Linkage and association mapping of Arabidopsis thaliana flowering time in nature. Plos Genetics. 6: e1000940. PMID 20463887 DOI: 10.1371/Journal.Pgen.1000940 |
0.539 |
|
| 2010 |
Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, ... ... Nordborg M, et al. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature. 465: 627-31. PMID 20336072 DOI: 10.1038/Nature08800 |
0.827 |
|
| 2010 |
Platt A, Horton M, Huang YS, Li Y, Anastasio AE, Mulyati NW, Agren J, Bossdorf O, Byers D, Donohue K, Dunning M, Holub EB, Hudson A, Le Corre V, Loudet O, ... ... Nordborg M, et al. The scale of population structure in Arabidopsis thaliana. Plos Genetics. 6: e1000843. PMID 20169178 DOI: 10.1371/Journal.Pgen.1000843 |
0.469 |
|
| 2010 |
Cooper EA, Whittall JB, Hodges SA, Nordborg M. Genetic variation at nuclear loci fails to distinguish two morphologically distinct species of Aquilegia. Plos One. 5: e8655. PMID 20098727 DOI: 10.1371/Journal.Pone.0008655 |
0.498 |
|
| 2010 |
Nordborg M, Weigel D. Evolutionary and Population Genetics of Plants Annual Review of Genetics. 45: 110301100158074. DOI: 10.1146/Annurev-Genet-110410-132449 |
0.402 |
|
| 2008 |
Nordborg M, Weigel D. Next-generation genetics in plants. Nature. 456: 720-3. PMID 19079047 DOI: 10.1038/Nature07629 |
0.487 |
|
| 2008 |
Ding Y, Larson G, Rivas G, Lundberg C, Geller L, Ouyang C, Weitzel J, Archambeau J, Slater J, Daly MB, Benson AB, Kirkwood JM, O'Dwyer PJ, Sutphen R, Stewart JA, ... ... Nordborg M, et al. Strong signature of natural selection within an FHIT intron implicated in prostate cancer risk. Plos One. 3: e3533. PMID 18953408 DOI: 10.1371/Journal.Pone.0003533 |
0.384 |
|
| 2008 |
Padhukasahasram B, Marjoram P, Wall JD, Bustamante CD, Nordborg M. Exploring population genetic models with recombination using efficient forward-time simulations. Genetics. 178: 2417-27. PMID 18430959 DOI: 10.1534/Genetics.107.085332 |
0.707 |
|
| 2008 |
Foxe JP, Dar VU, Zheng H, Nordborg M, Gaut BS, Wright SI. Selection on amino acid substitutions in Arabidopsis. Molecular Biology and Evolution. 25: 1375-83. PMID 18390851 DOI: 10.1093/Molbev/Msn079 |
0.409 |
|
| 2008 |
Fujimoto R, Kinoshita Y, Kawabe A, Kinoshita T, Takashima K, Nordborg M, Nasrallah ME, Shimizu KK, Kudoh H, Kakutani T. Evolution and control of imprinted FWA genes in the genus Arabidopsis. Plos Genetics. 4: e1000048. PMID 18389059 DOI: 10.1371/Journal.Pgen.1000048 |
0.369 |
|
| 2007 |
Zhao K, Nordborg M, Marjoram P. Genome-wide association mapping using mixed-models: application to GAW15 Problem 3. Bmc Proceedings. 1: S164. PMID 18466510 DOI: 10.1186/1753-6561-1-S1-S164 |
0.749 |
|
| 2007 |
Kim S, Plagnol V, Hu TT, Toomajian C, Clark RM, Ossowski S, Ecker JR, Weigel D, Nordborg M. Recombination and linkage disequilibrium in Arabidopsis thaliana. Nature Genetics. 39: 1151-5. PMID 17676040 DOI: 10.1038/Ng2115 |
0.84 |
|
| 2007 |
Tang C, Toomajian C, Sherman-Broyles S, Plagnol V, Guo YL, Hu TT, Clark RM, Nasrallah JB, Weigel D, Nordborg M. The evolution of selfing in Arabidopsis thaliana. Science (New York, N.Y.). 317: 1070-2. PMID 17656687 DOI: 10.1126/Science.1143153 |
0.767 |
|
| 2007 |
Clark RM, Schweikert G, Toomajian C, Ossowski S, Zeller G, Shinn P, Warthmann N, Hu TT, Fu G, Hinds DA, Chen H, Frazer KA, Huson DH, Schölkopf B, Nordborg M, et al. Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science (New York, N.Y.). 317: 338-42. PMID 17641193 DOI: 10.1126/Science.1138632 |
0.838 |
|
| 2007 |
Borevitz JO, Hazen SP, Michael TP, Morris GP, Baxter IR, Hu TT, Chen H, Werner JD, Nordborg M, Salt DE, Kay SA, Chory J, Weigel D, Jones JD, Ecker JR. Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 104: 12057-62. PMID 17626786 DOI: 10.1073/Pnas.0705323104 |
0.771 |
|
| 2007 |
Sutter NB, Bustamante CD, Chase K, Gray MM, Zhao K, Zhu L, Padhukasahasram B, Karlins E, Davis S, Jones PG, Quignon P, Johnson GS, Parker HG, Fretwell N, Mosher DS, ... ... Nordborg M, et al. A single IGF1 allele is a major determinant of small size in dogs. Science (New York, N.Y.). 316: 112-5. PMID 17412960 DOI: 10.1126/Science.1137045 |
0.819 |
|
| 2007 |
Zhao K, Aranzana MJ, Kim S, Lister C, Shindo C, Tang C, Toomajian C, Zheng H, Dean C, Marjoram P, Nordborg M. An Arabidopsis example of association mapping in structured samples. Plos Genetics. 3: e4. PMID 17238287 DOI: 10.1371/Journal.Pgen.0030004 |
0.816 |
|
| 2006 |
Shindo C, Lister C, Crevillen P, Nordborg M, Dean C. Variation in the epigenetic silencing of FLC contributes to natural variation in Arabidopsis vernalization response. Genes & Development. 20: 3079-83. PMID 17114581 DOI: 10.1101/Gad.405306 |
0.352 |
|
| 2006 |
Padhukasahasram B, Wall JD, Marjoram P, Nordborg M. Estimating recombination rates from single-nucleotide polymorphisms using summary statistics. Genetics. 174: 1517-28. PMID 16980396 DOI: 10.1534/Genetics.106.060723 |
0.72 |
|
| 2006 |
Bakker EG, Stahl EA, Toomajian C, Nordborg M, Kreitman M, Bergelson J. Distribution of genetic variation within and among local populations of Arabidopsis thaliana over its species range. Molecular Ecology. 15: 1405-18. PMID 16626462 DOI: 10.1111/J.1365-294X.2006.02884.X |
0.809 |
|
| 2006 |
Toomajian C, Hu TT, Aranzana MJ, Lister C, Tang C, Zheng H, Zhao K, Calabrese P, Dean C, Nordborg M. A nonparametric test reveals selection for rapid flowering in the Arabidopsis genome. Plos Biology. 4: e137. PMID 16623598 DOI: 10.1371/Journal.Pbio.0040137 |
0.815 |
|
| 2006 |
Rosenberg NA, Nordborg M. A general population-genetic model for the production by population structure of spurious genotype-phenotype associations in discrete, admixed or spatially distributed populations. Genetics. 173: 1665-78. PMID 16582435 DOI: 10.1534/Genetics.105.055335 |
0.427 |
|
| 2006 |
Jakobsson M, Hagenblad J, Tavaré S, Säll T, Halldén C, Lind-Halldén C, Nordborg M. A unique recent origin of the allotetraploid species Arabidopsis suecica: Evidence from nuclear DNA markers. Molecular Biology and Evolution. 23: 1217-31. PMID 16549398 DOI: 10.1093/Molbev/Msk006 |
0.433 |
|
| 2006 |
Kim S, Zhao K, Jiang R, Molitor J, Borevitz JO, Nordborg M, Marjoram P. Association mapping with single-feature polymorphisms. Genetics. 173: 1125-33. PMID 16510789 DOI: 10.1534/Genetics.105.052720 |
0.733 |
|
| 2006 |
Plagnol V, Padhukasahasram B, Wall JD, Marjoram P, Nordborg M. Relative influences of crossing over and gene conversion on the pattern of linkage disequilibrium in Arabidopsis thaliana. Genetics. 172: 2441-8. PMID 16299388 DOI: 10.1534/Genetics.104.040311 |
0.751 |
|
| 2006 |
Kramer EM, Holappa L, Gould B, Jaramillo MA, Hodges S, Borevitz J, Nordborg M, Tomkins J. New genetic and genomic tools for the study of floral evolution Developmental Biology. 295: 337. DOI: 10.1016/J.Ydbio.2006.04.047 |
0.474 |
|
| 2005 |
Aranzana MJ, Kim S, Zhao K, Bakker E, Horton M, Jakob K, Lister C, Molitor J, Shindo C, Tang C, Toomajian C, Traw B, Zheng H, Bergelson J, Dean C, ... ... Nordborg M, et al. Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes. Plos Genetics. 1: e60. PMID 16292355 DOI: 10.1371/Journal.Pgen.0010060 |
0.83 |
|
| 2005 |
Weigel D, Nordborg M. Natural variation in Arabidopsis. How do we find the causal genes? Plant Physiology. 138: 567-8. PMID 15955918 DOI: 10.1104/Pp.104.900157 |
0.392 |
|
| 2005 |
Shindo C, Aranzana MJ, Lister C, Baxter C, Nicholls C, Nordborg M, Dean C. Role of FRIGIDA and FLOWERING LOCUS C in determining variation in flowering time of Arabidopsis. Plant Physiology. 138: 1163-73. PMID 15908596 DOI: 10.1104/Pp.105.061309 |
0.474 |
|
| 2005 |
Nordborg M, Hu TT, Ishino Y, Jhaveri J, Toomajian C, Zheng H, Bakker E, Calabrese P, Gladstone J, Goyal R, Jakobsson M, Kim S, Morozov Y, Padhukasahasram B, Plagnol V, et al. The pattern of polymorphism in Arabidopsis thaliana. Plos Biology. 3: e196. PMID 15907155 DOI: 10.1371/Journal.Pbio.0030196 |
0.818 |
|
| 2005 |
Sjödin P, Kaj I, Krone S, Lascoux M, Nordborg M. On the meaning and existence of an effective population size. Genetics. 169: 1061-70. PMID 15489538 DOI: 10.1534/Genetics.104.026799 |
0.312 |
|
| 2005 |
Aranzana MJ, Kim S, Zhao K, Bakker E, Horton M, Jakob K, Lister C, Molitor J, Shindo C, Tang C, Toomajian C, Traw B, Zheng H, Bergelson J, Dean C, ... ... Nordborg M, et al. Genome-wide association mapping in Arabidopsis thaliana identifies previously known genes responsible for variation in flowering time and pathogen resistance Plos Genetics. DOI: 10.1371/Journal.Pgen.0010060.Eor |
0.801 |
|
| 2005 |
Araozarsa SJ, Kim S, Zhao K, Bakkes E, Hortors M, Jakob K, Lister C, Mofiter J, Shirsdo CH, Tang C, Toomajiars C, Traw B, Zhersg H, Bergelson J, Dean C, ... ... Nordborg M, et al. Genome-Wide Association Mapping in Identifies Previously Known Flowering Time and Pathogen Resistance Genes Plos Genetics. 1: 531-539. DOI: 10 1371/journal pgen.0010060 |
0.357 |
|
| 2004 |
Hagenblad J, Tang C, Molitor J, Werner J, Zhao K, Zheng H, Marjoram P, Weigel D, Nordborg M. Haplotype structure and phenotypic associations in the chromosomal regions surrounding two Arabidopsis thaliana flowering time loci. Genetics. 168: 1627-38. PMID 15579712 DOI: 10.1534/Genetics.104.029470 |
0.837 |
|
| 2004 |
Wiuf C, Zhao K, Innan H, Nordborg M. The probability and chromosomal extent of trans-specific polymorphism. Genetics. 168: 2363-72. PMID 15371365 DOI: 10.1534/Genetics.104.029488 |
0.723 |
|
| 2004 |
Padhukasahasram B, Marjoram P, Nordborg M. Estimating the rate of gene conversion on human chromosome 21. American Journal of Human Genetics. 75: 386-97. PMID 15250027 DOI: 10.1086/423451 |
0.751 |
|
| 2003 |
Borevitz JO, Nordborg M. The impact of genomics on the study of natural variation in Arabidopsis. Plant Physiology. 132: 718-25. PMID 12805600 DOI: 10.1104/Pp.103.023549 |
0.459 |
|
| 2003 |
Innan H, Padhukasahasram B, Nordborg M. The pattern of polymorphism on human chromosome 21. Genome Research. 13: 1158-68. PMID 12799351 DOI: 10.1101/Gr.466303 |
0.771 |
|
| 2003 |
Arnheim N, Calabrese P, Nordborg M. Hot and cold spots of recombination in the human genome: the reason we should find them and how this can be achieved. American Journal of Human Genetics. 73: 5-16. PMID 12772086 DOI: 10.1086/376419 |
0.374 |
|
| 2002 |
Zhang K, Calabrese P, Nordborg M, Sun F. Haplotype block structure and its applications to association studies: power and study designs. American Journal of Human Genetics. 71: 1386-94. PMID 12439824 DOI: 10.1086/344780 |
0.425 |
|
| 2002 |
Innan H, Nordborg M. Recombination or mutational hot spots in human mtDNA? Molecular Biology and Evolution. 19: 1122-7. PMID 12082131 DOI: 10.1093/Oxfordjournals.Molbev.A004170 |
0.32 |
|
| 2002 |
Hagenblad J, Nordborg M. Sequence variation and haplotype structure surrounding the flowering time locus FRI in Arabidopsis thaliana. Genetics. 161: 289-98. PMID 12019242 |
0.389 |
|
| 2002 |
Rosenberg NA, Nordborg M. Genealogical trees, coalescent theory and the analysis of genetic polymorphisms. Nature Reviews. Genetics. 3: 380-90. PMID 11988763 DOI: 10.1038/Nrg795 |
0.481 |
|
| 2002 |
Nordborg M, Tavaré S. Linkage disequilibrium: what history has to tell us. Trends in Genetics : Tig. 18: 83-90. PMID 11818140 DOI: 10.1016/S0168-9525(02)02557-X |
0.468 |
|
| 2002 |
Nordborg M, Innan H. Molecular population genetics. Current Opinion in Plant Biology. 5: 69-73. PMID 11788311 DOI: 10.1016/S1369-5266(01)00230-8 |
0.485 |
|
| 2002 |
Nordborg M, Borevitz JO, Bergelson J, Berry CC, Chory J, Hagenblad J, Kreitman M, Maloof JN, Noyes T, Oefner PJ, Stahl EA, Weigel D. The extent of linkage disequilibrium in Arabidopsis thaliana. Nature Genetics. 30: 190-3. PMID 11780140 DOI: 10.1038/Ng813 |
0.734 |
|
| 1997 |
Charlesworth B, Nordborg M, Charlesworth D. The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations. Genetical Research. 70: 155-74. PMID 9449192 DOI: 10.1017/S0016672397002954 |
0.472 |
|
| 1997 |
Nordborg M. Structured coalescent processes on different time scales. Genetics. 146: 1501-14. PMID 9258691 |
0.332 |
|
| 1996 |
Nordborg M, Charlesworth B, Charlesworth D. The effect of recombination on background selection. Genetical Research. 67: 159-74. PMID 8801188 DOI: 10.1017/S0016672300033619 |
0.439 |
|
| 1996 |
Nordborg M, Charlesworth B, Charlesworth D. Increased levels of polymorphism surrounding selectively maintained sites in highly selfing species Proceedings of the Royal Society B: Biological Sciences. 263: 1033-1039. DOI: 10.1098/Rspb.1996.0152 |
0.397 |
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