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Julie A. Harris - Publications

Affiliations: 
University of California, San Francisco, San Francisco, CA 
Area:
cell death, neuro protection
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46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Ramirez DMO, Whitesell JD, Bhagwat N, Thomas TL, Ajay AD, Nawaby A, Delatour B, Bay S, LaFaye P, Knox JE, Harris JA, Meeks JP, Diamond MI. Endogenous pathology in tauopathy mice progresses via brain networks. Biorxiv : the Preprint Server For Biology. PMID 37293074 DOI: 10.1101/2023.05.23.541792  0.306
2023 Wang Q, Wang Y, Kuo HC, Xie P, Kuang X, Hirokawa KE, Naeemi M, Yao S, Mallory M, Ouellette B, Lesnar P, Li Y, Ye M, Chen C, Xiong W, ... ... Harris JA, et al. Regional and cell-type-specific afferent and efferent projections of the mouse claustrum. Cell Reports. 42: 112118. PMID 36774552 DOI: 10.1016/j.celrep.2023.112118  0.625
2022 Yao S, Wang Q, Hirokawa KE, Ouellette B, Ahmed R, Bomben J, Brouner K, Casal L, Caldejon S, Cho A, Dotson NI, Daigle TL, Egdorf T, Enstrom R, Gary A, ... ... Harris JA, et al. A whole-brain monosynaptic input connectome to neuron classes in mouse visual cortex. Nature Neuroscience. PMID 36550293 DOI: 10.1038/s41593-022-01219-x  0.327
2022 Xia D, Lianoglou S, Sandmann T, Calvert M, Suh JH, Thomsen E, Dugas J, Pizzo ME, DeVos SL, Earr TK, Lin CC, Davis S, Ha C, Leung AW, Nguyen H, ... ... Harris JA, et al. Novel App knock-in mouse model shows key features of amyloid pathology and reveals profound metabolic dysregulation of microglia. Molecular Neurodegeneration. 17: 41. PMID 35690868 DOI: 10.1186/s13024-022-00547-7  0.724
2021 Peng H, Xie P, Liu L, Kuang X, Wang Y, Qu L, Gong H, Jiang S, Li A, Ruan Z, Ding L, Yao Z, Chen C, Chen M, Daigle TL, ... ... Harris JA, et al. Morphological diversity of single neurons in molecularly defined cell types. Nature. 598: 174-181. PMID 34616072 DOI: 10.1038/s41586-021-03941-1  0.613
2021 Muñoz-Castañeda R, Zingg B, Matho KS, Chen X, Wang Q, Foster NN, Li A, Narasimhan A, Hirokawa KE, Huo B, Bannerjee S, Korobkova L, Park CS, Park YG, Bienkowski MS, ... ... Harris JA, et al. Cellular anatomy of the mouse primary motor cortex. Nature. 598: 159-166. PMID 34616071 DOI: 10.1038/s41586-021-03970-w  0.336
2021 Siegle JH, Jia X, Durand S, Gale S, Bennett C, Graddis N, Heller G, Ramirez TK, Choi H, Luviano JA, Groblewski PA, Ahmed R, Arkhipov A, Bernard A, Billeh YN, ... ... Harris JA, et al. Survey of spiking in the mouse visual system reveals functional hierarchy. Nature. PMID 33473216 DOI: 10.1038/s41586-020-03171-x  0.748
2020 Coletta L, Pagani M, Whitesell JD, Harris JA, Bernhardt B, Gozzi A. Network structure of the mouse brain connectome with voxel resolution. Science Advances. 6. PMID 33355124 DOI: 10.1126/sciadv.abb7187  0.737
2020 Whitesell JD, Liska A, Coletta L, Hirokawa KE, Bohn P, Williford A, Groblewski PA, Graddis N, Kuan L, Knox JE, Ho A, Wakeman W, Nicovich PR, Nguyen TN, van Velthoven CTJ, ... ... Harris JA, et al. Regional, Layer, and Cell-Type-Specific Connectivity of the Mouse Default Mode Network. Neuron. PMID 33290731 DOI: 10.1016/j.neuron.2020.11.011  0.761
2020 Winnubst J, Spruston N, Harris JA. Linking axon morphology to gene expression: a strategy for neuronal cell-type classification. Current Opinion in Neurobiology. 65: 70-76. PMID 33181399 DOI: 10.1016/j.conb.2020.10.006  0.332
2020 Davis EJ, Broestl L, Abdulai-Saiku S, Worden K, Bonham LW, Miñones-Moyano E, Moreno AJ, Wang D, Chang K, Williams G, Garay BI, Lobach I, Devidze N, Kim D, Anderson-Bergman C, ... ... Harris JA, et al. A second X chromosome contributes to resilience in a mouse model of Alzheimer's disease. Science Translational Medicine. 12. PMID 32848093 DOI: 10.1126/Scitranslmed.Aaz5677  0.745
2020 Ding SL, Yao Z, Hirokawa KE, Nguyen TN, Graybuck LT, Fong O, Bohn P, Ngo K, Smith KA, Koch C, Phillips JW, Lein ES, Harris JA, Tasic B, Zeng H. Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis. Cell Reports. 31: 107648. PMID 32433957 DOI: 10.1016/J.Celrep.2020.107648  0.337
2020 Wang Q, Ding SL, Li Y, Royall J, Feng D, Lesnar P, Graddis N, Naeemi M, Facer B, Ho A, Dolbeare T, Blanchard B, Dee N, Wakeman W, Hirokawa KE, ... ... Harris JA, et al. The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas. Cell. PMID 32386544 DOI: 10.1016/J.Cell.2020.04.007  0.559
2019 Melozzi F, Bergmann E, Harris JA, Kahn I, Jirsa V, Bernard C. Individual structural features constrain the mouse functional connectome. Proceedings of the National Academy of Sciences of the United States of America. PMID 31826956 DOI: 10.1073/Pnas.1906694116  0.382
2019 Harris JA, Mihalas S, Hirokawa KE, Whitesell JD, Choi H, Bernard A, Bohn P, Caldejon S, Casal L, Cho A, Feiner A, Feng D, Gaudreault N, Gerfen CR, Graddis N, et al. Hierarchical organization of cortical and thalamic connectivity. Nature. PMID 31666704 DOI: 10.1038/S41586-019-1716-Z  0.775
2019 Gouwens NW, Sorensen SA, Berg J, Lee C, Jarsky T, Ting J, Sunkin SM, Feng D, Anastassiou CA, Barkan E, Bickley K, Blesie N, Braun T, Brouner K, Budzillo A, ... ... Harris JA, et al. Classification of electrophysiological and morphological neuron types in the mouse visual cortex. Nature Neuroscience. PMID 31209381 DOI: 10.1038/S41593-019-0417-0  0.691
2019 Lo L, Yao S, Kim DW, Cetin A, Harris J, Zeng H, Anderson DJ, Weissbourd B. Connectional architecture of a mouse hypothalamic circuit node controlling social behavior. Proceedings of the National Academy of Sciences of the United States of America. PMID 30898882 DOI: 10.1073/Pnas.1817503116  0.408
2019 Knox JE, Harris KD, Graddis N, Whitesell JD, Zeng H, Harris JA, Shea-Brown E, Mihalas S. High-resolution data-driven model of the mouse connectome. Network Neuroscience (Cambridge, Mass.). 3: 217-236. PMID 30793081 DOI: 10.1162/netn_a_00066  0.757
2018 Tasic B, Yao Z, Graybuck LT, Smith KA, Nguyen TN, Bertagnolli D, Goldy J, Garren E, Economo MN, Viswanathan S, Penn O, Bakken T, Menon V, Miller J, Fong O, ... ... Harris JA, et al. Shared and distinct transcriptomic cell types across neocortical areas. Nature. 563: 72-78. PMID 30382198 DOI: 10.1038/S41586-018-0654-5  0.549
2018 Whitesell JD, Buckley AR, Knox JE, Kuan L, Graddis N, Pelos A, Mukora A, Wakeman W, Bohn P, Ho A, Hirokawa KE, Harris JA. Whole brain imaging reveals distinct spatial patterns of amyloid beta deposition in three mouse models of Alzheimer's disease. The Journal of Comparative Neurology. PMID 30311654 DOI: 10.1002/Cne.24555  0.766
2018 Daigle TL, Madisen L, Hage TA, Valley MT, Knoblich U, Larsen RS, Takeno MM, Huang L, Gu H, Larsen R, Mills M, Bosma-Moody A, Siverts LA, Walker M, Graybuck LT, ... ... Harris JA, et al. A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality. Cell. 174: 465-480.e22. PMID 30007418 DOI: 10.1016/J.Cell.2018.06.035  0.379
2018 Chatterjee S, Sullivan HA, MacLennan BJ, Xu R, Hou Y, Lavin TK, Lea NE, Michalski JE, Babcock KR, Dietrich S, Matthews GA, Beyeler A, Calhoon GG, Glober G, Whitesell JD, ... ... Harris JA, et al. Nontoxic, double-deletion-mutant rabies viral vectors for retrograde targeting of projection neurons. Nature Neuroscience. PMID 29507411 DOI: 10.1038/S41593-018-0091-7  0.742
2017 Quina LA, Harris J, Zeng H, Turner EE. Specific connections of the interpeduncular subnuclei reveal distinct components of the habenulopeduncular pathway. The Journal of Comparative Neurology. PMID 28387937 DOI: 10.1002/Cne.24221  0.34
2017 Martersteck EM, Hirokawa KE, Evarts M, Bernard A, Duan X, Li Y, Ng L, Oh SW, Ouellette B, Royall JJ, Stoecklin M, Wang Q, Zeng H, Sanes JR, Harris JA. Diverse Central Projection Patterns of Retinal Ganglion Cells. Cell Reports. 18: 2058-2072. PMID 28228269 DOI: 10.1016/J.Celrep.2017.01.075  0.544
2016 Billeh YN, Rodriguez AV, Bellesi M, Bernard A, de Vivo L, Funk CM, Harris J, Honjoh S, Mihalas S, Ng L, Koch C, Cirelli C, Tononi G. Effects of Chronic Sleep Restriction during Early Adolescence on the Adult Pattern of Connectivity of Mouse Secondary Motor Cortex. Eneuro. 3. PMID 27351022 DOI: 10.1523/ENEURO.0053-16.2016  0.456
2016 Wang Q, Ng L, Harris JA, Feng D, Li Y, Royall JJ, Wook Oh S, Bernard A, Sunkin SM, Koch C, Zeng H. Organization of the connections between claustrum and cortex in the mouse. The Journal of Comparative Neurology. PMID 27223051 DOI: 10.1002/Cne.24047  0.523
2015 Quina LA, Tempest L, Ng L, Harris JA, Ferguson S, Jhou TC, Turner EE. Efferent pathways of the mouse lateral habenula. The Journal of Comparative Neurology. 523: 32-60. PMID 25099741 DOI: 10.1002/Cne.23662  0.388
2014 Harris JA, Hirokawa KE, Sorensen SA, Gu H, Mills M, Ng LL, Bohn P, Mortrud M, Ouellette B, Kidney J, Smith KA, Dang C, Sunkin S, Bernard A, Oh SW, et al. Anatomical characterization of Cre driver mice for neural circuit mapping and manipulation. Frontiers in Neural Circuits. 8: 76. PMID 25071457 DOI: 10.3389/Fncir.2014.00076  0.712
2014 Oh SW, Harris JA, Ng L, Winslow B, Cain N, Mihalas S, Wang Q, Lau C, Kuan L, Henry AM, Mortrud MT, Ouellette B, Nguyen TN, Sorensen SA, Slaughterbeck CR, et al. A mesoscale connectome of the mouse brain. Nature. 508: 207-14. PMID 24695228 DOI: 10.1038/Nature13186  0.708
2014 Wang Q, Henry AM, Harris JA, Oh SW, Joines KM, Nyhus J, Hirokawa KE, Dee N, Mortrud M, Parry S, Ouellette B, Caldejon S, Bernard A, Jones AR, Zeng H, et al. Systematic comparison of adeno-associated virus and biotinylated dextran amine reveals equivalent sensitivity between tracers and novel projection targets in the mouse brain. The Journal of Comparative Neurology. 522: 1989-2012. PMID 24639291 DOI: 10.1002/Cne.23567  0.593
2014 Striedter GF, Belgard TG, Chen CC, Davis FP, Finlay BL, Güntürkün O, Hale ME, Harris JA, Hecht EE, Hof PR, Hofmann HA, Holland LZ, Iwaniuk AN, Jarvis ED, Karten HJ, et al. NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species. Brain, Behavior and Evolution. 83: 1-8. PMID 24603302 DOI: 10.1159/000360152  0.313
2014 Striedter GF, Belgard TG, Chen CC, Davis FP, Finlay BL, Güntürkün O, Hale ME, Harris JA, Hecht EE, Hof PR, Hofmann HA, Holland LZ, Iwaniuk AN, Jarvis ED, Karten HJ, et al. NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species. The Journal of Comparative Neurology. 522: 1445-53. PMID 24596113 DOI: 10.1002/Cne.23568  0.313
2012 Harris JA, Koyama A, Maeda S, Ho K, Devidze N, Dubal DB, Yu GQ, Masliah E, Mucke L. Human P301L-mutant tau expression in mouse entorhinal-hippocampal network causes tau aggregation and presynaptic pathology but no cognitive deficits. Plos One. 7: e45881. PMID 23029293 DOI: 10.1371/Journal.Pone.0045881  0.73
2012 Harris JA, Oh SW, Zeng H. Adeno-associated viral vectors for anterograde axonal tracing with fluorescent proteins in nontransgenic and cre driver mice. Current Protocols in Neuroscience / Editorial Board, Jacqueline N. Crawley ... [Et Al.]. Unit 1.20.1-18. PMID 22470147 DOI: 10.1002/0471142301.Ns0120S59  0.367
2011 Cissé M, Halabisky B, Harris J, Devidze N, Dubal DB, Sun B, Orr A, Lotz G, Kim DH, Hamto P, Ho K, Yu GQ, Mucke L. Reversing EphB2 depletion rescues cognitive functions in Alzheimer model. Nature. 469: 47-52. PMID 21113149 DOI: 10.1038/Nature09635  0.713
2011 Cisse M, Halabisky B, Harris J, Kim D, Yu G, Mucke L. P4-201: Modulation of EphB2, but not of cellular prion protein, rescues cognitive functions in a mouse model of Alzheimer's disease Alzheimer's & Dementia. 7: S773-S774. DOI: 10.1016/j.jalz.2011.05.2224  0.495
2010 Harris JA, Devidze N, Verret L, Ho K, Halabisky B, Thwin MT, Kim D, Hamto P, Lo I, Yu GQ, Palop JJ, Masliah E, Mucke L. Transsynaptic progression of amyloid-β-induced neuronal dysfunction within the entorhinal-hippocampal network. Neuron. 68: 428-41. PMID 21040845 DOI: 10.1016/J.Neuron.2010.10.020  0.75
2010 Harris JA, Devidze N, Halabisky B, Lo I, Thwin MT, Yu GQ, Bredesen DE, Masliah E, Mucke L. Many neuronal and behavioral impairments in transgenic mouse models of Alzheimer's disease are independent of caspase cleavage of the amyloid precursor protein. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 372-81. PMID 20053918 DOI: 10.1523/Jneurosci.5341-09.2010  0.577
2009 Devidze† N, Harris† J, Thwin M, Yu G, Bredesen D, Mucke L. P1-280: Preventing C31 generation does not prevent many Aβ -dependenent neuronal and behavioral impairments in the happ-J20 mouse model of Alzheimer's disease Alzheimer's & Dementia. 5: P259-P259. DOI: 10.1016/j.jalz.2009.04.1237  0.53
2008 Harris JA, Iguchi F, Seidl AH, Lurie DI, Rubel EW. Afferent deprivation elicits a transcriptional response associated with neuronal survival after a critical period in the mouse cochlear nucleus. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 10990-1002. PMID 18945907 DOI: 10.1523/JNEUROSCI.2697-08.2008  0.76
2008 Harris JA, Thwin MT, Mucke L. P1-492: Identifying region-specific contributions to entorhinal-hippocampal network vulnerability in Alzheimer's disease Alzheimer's & Dementia. 4: T364-T364. DOI: 10.1016/j.jalz.2008.05.1075  0.562
2007 Lu Y, Harris JA, Rubel EW. Development of spontaneous miniature EPSCs in mouse AVCN neurons during a critical period of afferent-dependent neuron survival. Journal of Neurophysiology. 97: 635-46. PMID 17079338 DOI: 10.1152/Jn.00915.2006  0.54
2006 Harris JA, Rubel EW. Afferent regulation of neuron number in the cochlear nucleus: cellular and molecular analyses of a critical period. Hearing Research. 216: 127-37. PMID 16874907 DOI: 10.1016/j.heares.2006.03.016  0.545
2006 Whitesell JD, Buckley AR, Graddis N, Kuan L, Knox JE, Naeemi M, Bohn P, Mukora A, Hirokawa KA, Harris JA. P4-225: WHOLE BRAIN IMAGING REVEALS DISTINCT SPATIAL PATTERNS OF AMYLOID BETA DEPOSITION AND ATROPHY IN MOUSE MODELS OF ALZHEIMER'S DISEASE Alzheimer's & Dementia. 14: P1528-P1529. DOI: 10.1016/J.Jalz.2018.07.046  0.739
2005 Harris JA, Hardie NA, Bermingham-McDonogh O, Rubel EW. Gene expression differences over a critical period of afferent-dependent neuron survival in the mouse auditory brainstem. The Journal of Comparative Neurology. 493: 460-74. PMID 16261529 DOI: 10.1002/cne.20776  0.553
2003 Harris JA, Cheng AG, Cunningham LL, MacDonald G, Raible DW, Rubel EW. Neomycin-induced hair cell death and rapid regeneration in the lateral line of zebrafish (Danio rerio). Journal of the Association For Research in Otolaryngology : Jaro. 4: 219-34. PMID 12943374 DOI: 10.1007/S10162-002-3022-X  0.685
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