Rafal Bogacz, Ph.D. - Publications

Affiliations: 
computer science University of Bristol, Bristol, England, United Kingdom 
Area:
Computational neuroscience
Website:
http://www.cs.bris.ac.uk/~rafal/

61 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Herz DM, Zavala BA, Bogacz R, Brown P. Neural Correlates of Decision Thresholds in the Human Subthalamic Nucleus. Current Biology : Cb. PMID 26996501 DOI: 10.1016/j.cub.2016.01.051  1
2015 Pavlides A, Hogan SJ, Bogacz R. Computational Models Describing Possible Mechanisms for Generation of Excessive Beta Oscillations in Parkinson's Disease. Plos Computational Biology. 11: e1004609. PMID 26683341 DOI: 10.1371/journal.pcbi.1004609  1
2015 Syed EC, Grima LL, Magill PJ, Bogacz R, Brown P, Walton ME. Action initiation shapes mesolimbic dopamine encoding of future rewards. Nature Neuroscience. PMID 26642087 DOI: 10.1038/nn.4187  1
2015 Keuken MC, Van Maanen L, Bogacz R, Schäfer A, Neumann J, Turner R, Forstmann BU. The subthalamic nucleus during decision-making with multiple alternatives. Human Brain Mapping. 36: 4041-52. PMID 26178078 DOI: 10.1002/hbm.22896  1
2015 Grogan J, Bogacz R, Tsivos D, Whone A, Coulthard E. Dopamine and Consolidation of Episodic Memory: Timing is Everything. Journal of Cognitive Neuroscience. 27: 2035-50. PMID 26102227 DOI: 10.1162/jocn_a_00840  1
2015 Dodson PD, Larvin JT, Duffell JM, Garas FN, Doig NM, Kessaris N, Duguid IC, Bogacz R, Butt SJ, Magill PJ. Distinct developmental origins manifest in the specialized encoding of movement by adult neurons of the external globus pallidus. Neuron. 86: 501-13. PMID 25843402 DOI: 10.1016/j.neuron.2015.03.007  1
2015 Bogacz R. A tutorial on the free-energy framework for modelling perception and learning Journal of Mathematical Psychology. DOI: 10.1016/j.jmp.2015.11.003  1
2015 Bogacz R. Optimal decision making in the cortico-basal-ganglia circuit An Introduction to Model-Based Cognitive Neuroscience. 291-302. DOI: 10.1007/978-1-4939-2236-9_14  1
2014 Onslow AC, Jones MW, Bogacz R. A canonical circuit for generating phase-amplitude coupling. Plos One. 9: e102591. PMID 25136855 DOI: 10.1371/journal.pone.0102591  1
2014 Antoniades CA, Bogacz R, Kennard C, FitzGerald JJ, Aziz T, Green AL. Deep brain stimulation abolishes slowing of reactions to unlikely stimuli. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 10844-52. PMID 25122887 DOI: 10.1523/JNEUROSCI.1065-14.2014  1
2014 Jahans-Price T, Gorochowski TE, Wilson MA, Jones MW, Bogacz R. Computational modeling and analysis of hippocampal-prefrontal information coding during a spatial decision-making task. Frontiers in Behavioral Neuroscience. 8: 62. PMID 24624066 DOI: 10.3389/fnbeh.2014.00062  1
2014 Nevado-Holgado AJ, Mallet N, Magill PJ, Bogacz R. Effective connectivity of the subthalamic nucleus-globus pallidus network during Parkinsonian oscillations. The Journal of Physiology. 592: 1429-55. PMID 24344162 DOI: 10.1113/jphysiol.2013.259721  1
2013 Cassey TC, Evens DR, Bogacz R, Marshall JA, Ludwig CJ. Adaptive sampling of information in perceptual decision-making. Plos One. 8: e78993. PMID 24312172 DOI: 10.1371/journal.pone.0078993  1
2013 Green N, Bogacz R, Huebl J, Beyer AK, Kühn AA, Heekeren HR. Reduction of influence of task difficulty on perceptual decision making by STN deep brain stimulation. Current Biology : Cb. 23: 1681-4. PMID 23932401 DOI: 10.1016/j.cub.2013.07.001  1
2012 Lloyd K, Becker N, Jones MW, Bogacz R. Learning to use working memory: a reinforcement learning gating model of rule acquisition in rats. Frontiers in Computational Neuroscience. 6: 87. PMID 23115551 DOI: 10.3389/fncom.2012.00087  1
2012 Coulthard EJ, Bogacz R, Javed S, Mooney LK, Murphy G, Keeley S, Whone AL. Distinct roles of dopamine and subthalamic nucleus in learning and probabilistic decision making. Brain : a Journal of Neurology. 135: 3721-34. PMID 23114368 DOI: 10.1093/brain/aws273  1
2012 Marshall JA, Bogacz R, Gilchrist ID. Consistent implementation of decisions in the brain. Plos One. 7: e43443. PMID 22984425 DOI: 10.1371/journal.pone.0043443  1
2012 Pavlides A, Hogan SJ, Bogacz R. Improved conditions for the generation of beta oscillations in the subthalamic nucleus--globus pallidus network. The European Journal of Neuroscience. 36: 2229-39. PMID 22805067 DOI: 10.1111/j.1460-9568.2012.08105.x  1
2011 Kucewicz MT, Tricklebank MD, Bogacz R, Jones MW. Dysfunctional prefrontal cortical network activity and interactions following cannabinoid receptor activation. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 15560-8. PMID 22031901 DOI: 10.1523/JNEUROSCI.2970-11.2011  1
2011 Bogacz R, Larsen T. Integration of reinforcement learning and optimal decision-making theories of the basal ganglia. Neural Computation. 23: 817-51. PMID 21222528 DOI: 10.1162/NECO_a_00103  1
2011 Lulham A, Bogacz R, Vogt S, Brown MW. An Infomax algorithm can perform both familiarity discrimination and feature extraction in a single network. Neural Computation. 23: 909-26. PMID 21222523 DOI: 10.1162/NECO_a_00097  1
2011 Onslow AC, Bogacz R, Jones MW. Quantifying phase-amplitude coupling in neuronal network oscillations. Progress in Biophysics and Molecular Biology. 105: 49-57. PMID 20869387 DOI: 10.1016/j.pbiomolbio.2010.09.007  1
2011 Nevado-Holgado AJ, Terry JR, Bogacz R. Bifurcation analysis points towards the source of beta neuronal oscillations in Parkinson's disease Proceedings of the Ieee Conference On Decision and Control. 6492-6497. DOI: 10.1109/CDC.2011.6160899  1
2011 Marshall JAR, Bogacz R, Dornhaus A, Planqué R, Kovacs T, Franks NR. On optimal decision making in brains and social insect colonies Modelling Natural Action Selection. 500-522. DOI: 10.1017/CBO9780511731525.027  1
2011 Bogacz R, Usher M, Zhang J, McLelland JL. Extending a biologically inspired model of choice: Multi-alternatives, nonlinearity, and value-based multidimensional choice Modelling Natural Action Selection. 91-119. DOI: 10.1017/CBO9780511731525.009  1
2010 Zacksenhouse M, Bogacz R, Holmes P. Robust versus optimal strategies for two-alternative forced choice tasks. Journal of Mathematical Psychology. 54: 230-246. PMID 23180885 DOI: 10.1016/j.jmp.2009.12.004  1
2010 Holgado AJ, Terry JR, Bogacz R. Conditions for the generation of beta oscillations in the subthalamic nucleus-globus pallidus network. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 12340-52. PMID 20844130 DOI: 10.1523/JNEUROSCI.0817-10.2010  1
2010 Forstmann BU, Anwander A, Schäfer A, Neumann J, Brown S, Wagenmakers EJ, Bogacz R, Turner R. Cortico-striatal connections predict control over speed and accuracy in perceptual decision making. Proceedings of the National Academy of Sciences of the United States of America. 107: 15916-20. PMID 20733082 DOI: 10.1073/pnas.1004932107  1
2010 Howard-Jones PA, Bogacz R, Yoo JH, Leonards U, Demetriou S. The neural mechanisms of learning from competitors. Neuroimage. 53: 790-9. PMID 20600992 DOI: 10.1016/j.neuroimage.2010.06.027  1
2010 Larsen T, Leslie DS, Collins EJ, Bogacz R. Posterior weighted reinforcement learning with state uncertainty. Neural Computation. 22: 1149-79. PMID 20100078 DOI: 10.1162/neco.2010.01-09-948  1
2010 Larsen T, Bogacz R. Initiation and termination of integration in a decision process. Neural Networks : the Official Journal of the International Neural Network Society. 23: 322-33. PMID 20080384 DOI: 10.1016/j.neunet.2009.11.015  1
2010 Zhang J, Bogacz R. Optimal decision making on the basis of evidence represented in spike trains. Neural Computation. 22: 1113-48. PMID 20028228 DOI: 10.1162/neco.2009.05-09-1025  1
2010 Bogacz R, Wagenmakers EJ, Forstmann BU, Nieuwenhuis S. The neural basis of the speed-accuracy tradeoff. Trends in Neurosciences. 33: 10-6. PMID 19819033 DOI: 10.1016/j.tins.2009.09.002  1
2010 Bogacz R, Hu PT, Holmes PJ, Cohen JD. Do humans produce the speed-accuracy trade-off that maximizes reward rate? Quarterly Journal of Experimental Psychology (2006). 63: 863-91. PMID 19746300 DOI: 10.1080/17470210903091643  1
2010 Zhang J, Bogacz R. Bounded Ornstein-Uhlenbeck models for two-choice time controlled tasks Journal of Mathematical Psychology. 54: 322-333. DOI: 10.1016/j.jmp.2010.03.001  1
2009 Zhang J, Bogacz R, Holmes P. A comparison of bounded diffusion models for choice in time controlled tasks. Journal of Mathematical Psychology. 53: 231-241. PMID 19812713 DOI: 10.1016/j.jmp.2009.03.001  1
2009 Marshall JA, Bogacz R, Dornhaus A, Planqué R, Kovacs T, Franks NR. On optimal decision-making in brains and social insect colonies. Journal of the Royal Society, Interface / the Royal Society. 6: 1065-74. PMID 19324679 DOI: 10.1098/rsif.2008.0511  1
2008 Androulidakis Z, Lulham A, Bogacz R, Brown MW. Computational models can replicate the capacity of human recognition memory. Network (Bristol, England). 19: 161-82. PMID 18946835 DOI: 10.1080/09548980802412638  1
2008 Trimmer PC, Houston AI, Marshall JA, Bogacz R, Paul ES, Mendl MT, McNamara JM. Mammalian choices: combining fast-but-inaccurate and slow-but-accurate decision-making systems. Proceedings. Biological Sciences / the Royal Society. 275: 2353-61. PMID 18611852 DOI: 10.1098/rspb.2008.0417  1
2007 Bogacz R, McClure SM, Li J, Cohen JD, Montague PR. Short-term memory traces for action bias in human reinforcement learning. Brain Research. 1153: 111-21. PMID 17459346 DOI: 10.1016/j.brainres.2007.03.057  1
2007 Bogacz R, Usher M, Zhang J, McClelland JL. Extending a biologically inspired model of choice: multi-alternatives, nonlinearity and value-based multidimensional choice. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 362: 1655-70. PMID 17428774 DOI: 10.1098/rstb.2007.2059  1
2007 Bogacz R. Optimal decision network with distributed representation. Neural Networks : the Official Journal of the International Neural Network Society. 20: 564-76. PMID 17399947 DOI: 10.1016/j.neunet.2007.01.003  1
2007 Bogacz R. Optimal decision-making theories: linking neurobiology with behaviour. Trends in Cognitive Sciences. 11: 118-25. PMID 17276130 DOI: 10.1016/j.tics.2006.12.006  1
2007 Yeung N, Bogacz R, Holroyd CB, Nieuwenhuis S, Cohen JD. Theta phase resetting and the error-related negativity. Psychophysiology. 44: 39-49. PMID 17241139 DOI: 10.1111/j.1469-8986.2006.00482.x  1
2007 Bogacz R, Gurney K. The basal ganglia and cortex implement optimal decision making between alternative actions. Neural Computation. 19: 442-77. PMID 17206871 DOI: 10.1162/neco.2007.19.2.442  1
2006 Bogacz R, Brown E, Moehlis J, Holmes P, Cohen JD. The physics of optimal decision making: a formal analysis of models of performance in two-alternative forced-choice tasks. Psychological Review. 113: 700-65. PMID 17014301 DOI: 10.1037/0033-295X.113.4.700  1
2006 Anjum S, Bogacz R, Tucci V, Nolan PM. Model of reinforcement learning in the mouse reaching and grasping experiment Proceedings of Aisb'06: Adaptation in Artificial and Biological Systems. 1: 30-36.  1
2005 Brown E, Gao J, Holmes P, Bogacz R, Gilzenrat M, Cohen JD. Simple neural networks that optimize decisions International Journal of Bifurcation and Chaos in Applied Sciences and Engineering. 15: 803-826. DOI: 10.1142/S0218127405012478  1
2005 Holmes P, Shea-Brown E, Moehlis J, Bogacz R, Gao J, Aston-Jones G, Clayton E, Rajkowski J, Cohen JD. Optimal decisions: From neural spikes, through stochastic differential equations, to behavior Ieice Transactions On Fundamentals of Electronics, Communications and Computer Sciences. 2496-2502. DOI: 10.1093/ietfec/e88-a.10.2496  1
2004 Bogacz R, Cohen JD. Parameterization of connectionist models. Behavior Research Methods, Instruments, & Computers : a Journal of the Psychonomic Society, Inc. 36: 732-41. PMID 15641419  1
2004 Yeung N, Bogacz R, Holroyd CB, Cohen JD. Detection of synchronized oscillations in the electroencephalogram: an evaluation of methods. Psychophysiology. 41: 822-32. PMID 15563335 DOI: 10.1111/j.0048-5772.2004.00239.x  1
2003 Bogacz R, Brown MW. Comparison of computational models of familiarity discrimination in the perirhinal cortex. Hippocampus. 13: 494-524. PMID 12836918 DOI: 10.1002/hipo.10093  1
2003 Bogacz R, Brown MW. An anti-Hebbian model of familiarity discrimination in the perirhinal cortex Neurocomputing. 52: 1-6.  1
2002 Bogacz R, Brown MW. The restricted influence of sparseness of coding on the capacity of familiarity discrimination networks. Network (Bristol, England). 13: 457-85. PMID 12463340 DOI: 10.1088/0954-898X/13/4/303  1
2002 Bogacz R, Brown MW. Capacity of perirhinal cortex network for recognising frequently repeating stimuli Neurocomputing. 44: 337-342. DOI: 10.1016/S0925-2312(02)00367-3  1
2001 Bogacz R, Brown MW, Giraud-Carrier C. Model of familiarity discrimination in the perirhinal cortex. Journal of Computational Neuroscience. 10: 5-23. PMID 11316340 DOI: 10.1023/A:1008925909305  1
2001 Bogacz R, Brown MW, Giraud-Carrier C. Model of co-operation between recency, familiarity and novelty neurons in the perirhinal cortex Neurocomputing. 38: 1121-1126. DOI: 10.1016/S0925-2312(01)00472-6  1
2001 Bogacz R, Brown MW, Giraud-Carrier C. Emergence of movement sensitive neurons' properties by learning a sparse code for natural moving images Advances in Neural Information Processing Systems 1
2000 Bogacz R, Giraud-Carrier C. A novel modular neural architecture for rule-based and similarity-based reasoning Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science). 1778: 63-77.  1
2000 Bogacz R, Brown MW, Giraud-Carrier C. Frequency-based error back-propagation in a cortical network Proceedings of the International Joint Conference On Neural Networks. 2: 211-216.  1
1999 Bogacz R, Brown MW, Giraud-Carrier C. High capacity neural networks for familiarity discrimination Iee Conference Publication. 2: 773-778.  1
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