☰

Jeffrey H. Chuang - Publications

Affiliations: 
Graduate School of Arts & Sciences Boston College, Newton, MA, United States 
Area:
Evolution and Development Biology, Bioinformatics Biology
Tree Info Similar researchers PubMed Report error

24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Woo XY, Giordano J, Srivastava A, Zhao Z, Lloyd MW, Bruijn Rd, Suh Y, Kim J, Yang H, Lee C, Dean DA, Davis-Dusenbery B, Evrard YA, Doroshow JH, Welm AL, ... ... Chuang JH, et al. Abstract 1673: Conservation of copy number profiles during engraftment and passaging of patient-derived cancer xenografts Cancer Research. 80: 1673-1673. DOI: 10.1158/1538-7445.Am2020-1673  0.356
2019 Barthel FP, Johnson KC, Varn FS, Moskalik AD, Tanner G, Kocakavuk E, Anderson KJ, Abiola O, Aldape K, Alfaro KD, Alpar D, Amin SB, Ashley DM, Bandopadhayay P, Barnholtz-Sloan JS, ... ... Chuang JH, et al. Longitudinal molecular trajectories of diffuse glioma in adults. Nature. PMID 31748746 DOI: 10.1038/S41586-019-1775-1  0.3
2019 Somarelli JA, Gardner H, Cannataro VL, Gunady EF, Boddy AM, Johnson NA, Fisk JN, Gaffney SG, Chuang JH, Li S, Ciccarelli FD, Panchenko AR, Megquier K, Kumar S, Dornburg A, et al. Molecular biology and evolution of cancer: from discovery to action. Molecular Biology and Evolution. PMID 31642480 DOI: 10.1093/Molbev/Msz242  0.313
2019 Noorbakhsh J, Zhao ZM, Russell JC, Chuang JH. Treating Cancer as an Invasive Species. Molecular Cancer Research : McR. PMID 31527151 DOI: 10.1158/1541-7786.Mcr-19-0262  0.307
2019 Woo XY, Srivastava A, Graber JH, Yadav V, Sarsani VK, Simons A, Beane G, Grubb S, Ananda G, Liu R, Stafford G, Chuang JH, Airhart SD, Karuturi RKM, George J, et al. Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines. Bmc Medical Genomics. 12: 92. PMID 31262303 DOI: 10.1186/S12920-019-0551-2  0.358
2019 Chae YK, Anker JF, Oh MS, Bais P, Namburi S, Agte S, Giles FJ, Chuang JH. Mutations in DNA repair genes are associated with increased neoantigen burden and a distinct immunophenotype in lung squamous cell carcinoma. Scientific Reports. 9: 3235. PMID 30824826 DOI: 10.1038/S41598-019-39594-4  0.317
2019 Cho SY, Chae J, Na D, Kang W, Lee A, Min S, Kang J, Choi B, Lee J, Sung CO, Chuang JH, Lee C, Lee WS, Park H, Kim JI. Unstable genome and transcriptome dynamics during tumor metastasis contribute to therapeutic heterogeneity in colorectal cancers. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 30670495 DOI: 10.1158/1078-0432.Ccr-18-3460  0.307
2019 Zhao ZM, Yost SE, Hutchinson KE, Li SM, Yuan YC, Noorbakhsh J, Liu Z, Warden C, Johnson RM, Wu X, Chuang JH, Yuan Y. CCNE1 amplification is associated with poor prognosis in patients with triple negative breast cancer. Bmc Cancer. 19: 96. PMID 30665374 DOI: 10.1186/S12885-019-5290-4  0.301
2019 Woo XY, Srivastava A, Graber JH, Yadav V, Sarsani VK, Simons A, Beane G, Grubb S, Ananda G, Stafford G, Chuang JH, Airhart SD, Karuturi RK, George J, Bult CJ. Abstract 1075: Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): Challenges and guidelines Cancer Research. 79: 1075-1075. DOI: 10.1158/1538-7445.Am2019-1075  0.36
2018 Wang VG, Kim H, Chuang JH. Whole-exome sequencing capture kit biases yield false negative mutation calls in TCGA cohorts. Plos One. 13: e0204912. PMID 30281678 DOI: 10.1371/Journal.Pone.0204912  0.343
2018 Noorbakhsh J, Kim H, Namburi S, Chuang JH. Distribution-based measures of tumor heterogeneity are sensitive to mutation calling and lack strong clinical predictive power. Scientific Reports. 8: 11445. PMID 30061557 DOI: 10.1038/S41598-018-29154-7  0.302
2018 Chae YK, Anker JF, Bais P, Namburi S, Giles FJ, Chuang JH. Mutations in DNA repair genes are associated with increased neo-antigen load and activated T cell infiltration in lung adenocarcinoma. Oncotarget. 9: 7949-7960. PMID 29487705 DOI: 10.18632/Oncotarget.23742  0.318
2016 Menghi F, Inaki K, Woo X, Kumar PA, Grzeda KR, Malhotra A, Yadav V, Kim H, Marquez EJ, Ucar D, Shreckengast PT, Wagner JP, MacIntyre G, Murthy Karuturi KR, Scully R, ... ... Chuang JH, et al. The tandem duplicator phenotype as a distinct genomic configuration in cancer. Proceedings of the National Academy of Sciences of the United States of America. PMID 27071093 DOI: 10.1073/Pnas.1520010113  0.367
2016 Kim H, Kumar P, Menghi F, George J, Ananda G, Mockus S, Zhang C, Larson N, Chen HC, Yang Y, Keck J, Karuturi RK, Lee C, Bult C, Liu E, ... Chuang JH, et al. Abstract 2411: Evolution during propagation and treatment of patient-derived triple negative breast cancer xenografts Cancer Research. 76: 2411-2411. DOI: 10.1158/1538-7445.Am2016-2411  0.339
2015 Kim H, Bredel M, Park H, Chuang JH. Identification of Tumor Subtypes of Endometrial Carcinoma by Integrationof Heterogeneous Datasets Journal of Medical Diagnostic Methods. 4: 1-5. DOI: 10.4172/2168-9784.1000189  0.322
2014 Grzeda KR, Royer-Bertrand B, Inaki K, Kim H, Hillmer AM, Liu ET, Chuang JH. Functional chromatin features are associated with structural mutations in cancer. Bmc Genomics. 15: 1013. PMID 25417144 DOI: 10.1186/1471-2164-15-1013  0.304
2014 Ishimura R, Nagy G, Dotu I, Zhou H, Yang XL, Schimmel P, Senju S, Nishimura Y, Chuang JH, Ackerman SL. RNA function. Ribosome stalling induced by mutation of a CNS-specific tRNA causes neurodegeneration. Science (New York, N.Y.). 345: 455-9. PMID 25061210 DOI: 10.1126/Science.1249749  0.306
2012 Ritter DI, Dong Z, Guo S, Chuang JH. Transcriptional enhancers in protein-coding exons of vertebrate developmental genes. Plos One. 7: e35202. PMID 22567096 DOI: 10.1371/Journal.Pone.0035202  0.534
2011 Busby MA, Gray JM, Costa AM, Stewart C, Stromberg MP, Barnett D, Chuang JH, Springer M, Marth GT. Expression divergence measured by transcriptome sequencing of four yeast species. Bmc Genomics. 12: 635. PMID 22206443 DOI: 10.1186/1471-2164-12-635  0.302
2010 Ritter DI, Li Q, Kostka D, Pollard KS, Guo S, Chuang JH. The importance of being cis: evolution of orthologous fish and mammalian enhancer activity. Molecular Biology and Evolution. 27: 2322-32. PMID 20494938 DOI: 10.1093/Molbev/Msq128  0.517
2010 Li Q, Ritter D, Yang N, Dong Z, Li H, Chuang JH, Guo S. A systematic approach to identify functional motifs within vertebrate developmental enhancers. Developmental Biology. 337: 484-95. PMID 19850031 DOI: 10.1016/J.Ydbio.2009.10.019  0.541
2008 Persampieri J, Ritter DI, Lees D, Lehoczky J, Li Q, Guo S, Chuang JH. cneViewer: a database of conserved non-coding elements for studies of tissue-specific gene regulation. Bioinformatics (Oxford, England). 24: 2418-9. PMID 18718943 DOI: 10.1093/Bioinformatics/Btn443  0.546
2005 Chin CS, Chuang JH, Li H. Genome-wide regulatory complexity in yeast promoters: separation of functionally conserved and neutral sequence. Genome Research. 15: 205-13. PMID 15653830 DOI: 10.1101/Gr.3243305  0.333
2004 Chuang JH, Li H. Functional bias and spatial organization of genes in mutational hot and cold regions in the human genome. Plos Biology. 2: E29. PMID 14966531 DOI: 10.1371/Journal.Pbio.0020029  0.323
Show low-probability matches.