| Year |
Citation |
Score |
| 2024 |
Simon SJ, Furches A, Chhetri H, Evans L, Abeyratne CR, Jones P, Wimp G, Macaya-Sanz D, Jacobson D, Tschaplinski TJ, Tuskan GA, DiFazio SP. Genetic underpinnings of arthropod community distributions in Populus trichocarpa. The New Phytologist. PMID 38488269 DOI: 10.1111/nph.19660 |
0.335 |
|
| 2023 |
Sanderson BJ, Ghambir D, Feng G, Hu N, Cronk QC, Percy DM, Molina Freaner F, Johnson MG, Smart LB, Keefover-Ring K, Yin T, Ma T, DiFazio SP, Liu J, Olson MS. Phylogenomics reveals patterns ancient hybridization and differential diversification that contribute to phylogenetic conflict in willows, poplars, and close relatives. Systematic Biology. PMID 37449764 DOI: 10.1093/sysbio/syad042 |
0.356 |
|
| 2023 |
Hyden B, Zou J, Wilkerson DG, Carlson CH, Rivera Robles A, DiFazio SP, Smart LB. Structural variation of a sex-linked region confers monoecy and implicates GATA15 as a master regulator of sex in Salix purpurea L. The New Phytologist. PMID 36866707 DOI: 10.1111/nph.18853 |
0.446 |
|
| 2022 |
Abeyratne CR, Macaya-Sanz D, Zhou R, Barry KW, Daum C, Haiby K, Lipzen A, Stanton B, Yoshinaga Y, Zane M, Tuskan GA, DiFazio SP. High resolution mapping reveals hotspots and sex-biased recombination in Populus trichocarpa. G3 (Bethesda, Md.). PMID 36250890 DOI: 10.1093/g3journal/jkac269 |
0.436 |
|
| 2021 |
Hyden B, Carlson CH, Gouker FE, Schmutz J, Barry K, Lipzen A, Sharma A, Sandor L, Tuskan GA, Feng G, Olson MS, DiFazio SP, Smart LB. Integrative genomics reveals paths to sex dimorphism in Salix purpurea L. Horticulture Research. 8: 170. PMID 34333534 DOI: 10.1038/s41438-021-00606-y |
0.355 |
|
| 2021 |
Sanderson BJ, Feng G, Hu N, Carlson CH, Smart LB, Keefover-Ring K, Yin T, Ma T, Liu J, DiFazio SP, Olson MS. Sex determination through X-Y heterogamety in Salix nigra. Heredity. PMID 33510464 DOI: 10.1038/s41437-020-00397-3 |
0.379 |
|
| 2020 |
Sanderson BJ, DiFazio SP, Cronk QCB, Ma T, Olson MS. A targeted sequence capture array for phylogenetics and population genomics in the Salicaceae. Applications in Plant Sciences. 8: e11394. PMID 33163293 DOI: 10.1002/aps3.11394 |
0.361 |
|
| 2020 |
Yang W, Wang D, Li Y, Zhang Z, Tong S, Li M, Zhang X, Zhang L, Ren L, Ma X, Zhou R, Sanderson BJ, Keefover-Ring K, Yin T, Smart LB, ... ... DiFazio SP, et al. A general model to explain repeated turnovers of sex determination in the Salicaceae. Molecular Biology and Evolution. PMID 33027519 DOI: 10.1093/molbev/msaa261 |
0.357 |
|
| 2020 |
Chhetri HB, Furches A, Macaya-Sanz D, Walker AR, Kainer D, Jones P, Harman-Ware AE, Tschaplinski TJ, Jacobson D, Tuskan GA, DiFazio SP. Genome-Wide Association Study of Wood Anatomical and Morphological Traits in . Frontiers in Plant Science. 11: 545748. PMID 33013968 DOI: 10.3389/fpls.2020.545748 |
0.429 |
|
| 2020 |
Zhou R, Macaya-Sanz D, Schmutz J, Jenkins JW, Tuskan GA, DiFazio SP. Sequencing and Analysis of the Sex Determination Region of . Genes. 11. PMID 32722098 DOI: 10.3390/genes11080843 |
0.419 |
|
| 2020 |
Simon SJ, Tschaplinski TJ, M LeBoldus J, Keefover-Ring K, Azeem M, Chen JG, Macaya-Sanz D, MacDonald WL, Muchero W, DiFazio SP. Host plant genetic control of associated fungal and insect species in a hybrid cross. Ecology and Evolution. 10: 5119-5134. PMID 32551087 DOI: 10.1002/Ece3.6266 |
0.441 |
|
| 2020 |
Zhou R, Macaya-Sanz D, Carlson CH, Schmutz J, Jenkins JW, Kudrna D, Sharma A, Sandor L, Shu S, Barry K, Tuskan GA, Ma T, Liu J, Olson M, Smart LB, ... DiFazio SP, et al. A willow sex chromosome reveals convergent evolution of complex palindromic repeats. Genome Biology. 21: 38. PMID 32059685 DOI: 10.1186/S13059-020-1952-4 |
0.379 |
|
| 2020 |
Zhang Z, Chen Y, Zhang J, Ma X, Li Y, Li M, Wang D, Kang M, Wu H, Yang Y, Olson MS, DiFazio SP, Wan D, Liu J, Ma T. Improved genome assembly provides new insights into genome evolution in a desert poplar (Populus euphratica). Molecular Ecology Resources. PMID 32034885 DOI: 10.1111/1755-0998.13142 |
0.539 |
|
| 2019 |
Furches A, Kainer D, Weighill D, Large A, Jones P, Walker AM, Romero J, Gazolla JGFM, Joubert W, Shah M, Streich J, Ranjan P, Schmutz J, Sreedasyam A, Macaya-Sanz D, ... ... DiFazio S, et al. Finding New Cell Wall Regulatory Genes in Using Multiple Lines of Evidence. Frontiers in Plant Science. 10: 1249. PMID 31649710 DOI: 10.3389/Fpls.2019.01249 |
0.45 |
|
| 2019 |
Wang M, Zhang L, Zhang Z, Li M, Wang D, Zhang X, Xi Z, Keefover-Ring K, Smart LB, DiFazio SP, Olson MS, Yin T, Liu J, Ma T. Phylogenomics of the genus Populus reveals extensive interspecific gene flow and balancing selection. The New Phytologist. PMID 31550399 DOI: 10.1111/Nph.16215 |
0.388 |
|
| 2019 |
Weighill D, Macaya-Sanz D, DiFazio SP, Joubert W, Shah M, Schmutz J, Sreedasyam A, Tuskan G, Jacobson D. Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation. Frontiers in Genetics. 10: 487. PMID 31214244 DOI: 10.3389/Fgene.2019.00487 |
0.374 |
|
| 2019 |
Weighill D, Jones P, Bleker C, Ranjan P, Shah M, Zhao N, Martin M, DiFazio S, Macaya-Sanz D, Schmutz J, Sreedasyam A, Tschaplinski T, Tuskan G, Jacobson D. Multi-Phenotype Association Decomposition: Unraveling Complex Gene-Phenotype Relationships. Frontiers in Genetics. 10: 417. PMID 31134130 DOI: 10.3389/Fgene.2019.00417 |
0.494 |
|
| 2019 |
Chhetri HB, Macaya-Sanz D, Kainer D, Biswal AK, Evans LM, Chen JG, Collins C, Hunt K, Mohanty SS, Rosenstiel T, Ryno D, Winkeler K, Yang X, Jacobson D, Mohnen D, ... ... DiFazio SP, et al. Multi-trait genome-wide association analysis of Populus trichocarpa identifies key polymorphisms controlling morphological and physiological traits. The New Phytologist. PMID 30843213 DOI: 10.1111/Nph.15777 |
0.451 |
|
| 2018 |
Tuskan GA, Groover AT, Schmutz J, DiFazio SP, Myburg A, Grattapaglia D, Smart LB, Yin T, Aury JM, Kremer A, Leroy T, Le Provost G, Plomion C, Carlson JE, Randall J, et al. Hardwood Tree Genomics: Unlocking Woody Plant Biology. Frontiers in Plant Science. 9: 1799. PMID 30619389 DOI: 10.3389/Fpls.2018.01799 |
0.521 |
|
| 2018 |
Chhatre VE, Evans LM, DiFazio SP, Keller SR. Adaptive Introgression and Maintenance of a Trispecies Hybrid Complex in Range-Edge Populations of Populus. Molecular Ecology. PMID 30071141 DOI: 10.1111/Mec.14820 |
0.407 |
|
| 2018 |
Zhou R, Macaya-Sanz D, Rodgers-Melnick E, Carlson CH, Gouker FE, Evans LM, Schmutz J, Jenkins JW, Yan J, Tuskan GA, Smart LB, DiFazio SP. Characterization of a large sex determination region in Salix purpurea L. (Salicaceae). Molecular Genetics and Genomics : Mgg. PMID 30022352 DOI: 10.1007/S00438-018-1473-Y |
0.713 |
|
| 2018 |
Woolbright SA, Rehill BJ, Lindroth RL, DiFazio SP, Martinsen GD, Zinkgraf MS, Allan GJ, Keim P, Whitham TG. Large effect quantitative trait loci for salicinoid phenolic glycosides in : Implications for gene discovery. Ecology and Evolution. 8: 3726-3737. PMID 29686853 DOI: 10.1002/Ece3.3932 |
0.481 |
|
| 2018 |
Weighill D, Jones P, Shah M, Ranjan P, Muchero W, Schmutz J, Sreedasyam A, Macaya-Sanz D, Sykes R, Zhao N, Martin MZ, DiFazio S, Tschaplinski TJ, Tuskan G, Jacobson D. Pleiotropic and Epistatic Network-Based Discovery: Integrated Networks for Target Gene Discovery Frontiers in Energy Research. 6. DOI: 10.3389/Fenrg.2018.00030 |
0.534 |
|
| 2015 |
Muchero W, Guo J, DiFazio SP, Chen JG, Ranjan P, Slavov GT, Gunter LE, Jawdy S, Bryan AC, Sykes R, Ziebell A, Klápšt? J, Porth I, Skyba O, Unda F, et al. High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus. Bmc Genomics. 16: 24. PMID 25613058 DOI: 10.1186/S12864-015-1215-Z |
0.333 |
|
| 2015 |
Evans LM, Allan GJ, DiFazio SP, Slavov GT, Wilder JA, Floate KD, Rood SB, Whitham TG. Geographical barriers and climate influence demographic history in narrowleaf cottonwoods. Heredity. 114: 387-96. PMID 25585921 DOI: 10.1038/Hdy.2014.115 |
0.311 |
|
| 2014 |
Evans LM, Slavov GT, Rodgers-Melnick E, Martin J, Ranjan P, Muchero W, Brunner AM, Schackwitz W, Gunter L, Chen JG, Tuskan GA, DiFazio SP. Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations. Nature Genetics. 46: 1089-96. PMID 25151358 DOI: 10.1038/Ng.3075 |
0.737 |
|
| 2013 |
Ma T, Wang J, Zhou G, Yue Z, Hu Q, Chen Y, Liu B, Qiu Q, Wang Z, Zhang J, Wang K, Jiang D, Gou C, Yu L, Zhan D, ... ... Difazio SP, et al. Genomic insights into salt adaptation in a desert poplar. Nature Communications. 4: 2797. PMID 24256998 DOI: 10.1038/Ncomms3797 |
0.401 |
|
| 2013 |
Rodgers-Melnick E, Culp M, DiFazio SP. Predicting whole genome protein interaction networks from primary sequence data in model and non-model organisms using ENTS. Bmc Genomics. 14: 608. PMID 24015873 DOI: 10.1186/1471-2164-14-608 |
0.694 |
|
| 2013 |
Porth I, Klapšte J, Skyba O, Hannemann J, McKown AD, Guy RD, DiFazio SP, Muchero W, Ranjan P, Tuskan GA, Friedmann MC, Ehlting J, Cronk QC, El-Kassaby YA, Douglas CJ, et al. Genome-wide association mapping for wood characteristics in Populus identifies an array of candidate single nucleotide polymorphisms. The New Phytologist. 200: 710-26. PMID 23889164 DOI: 10.1111/Nph.12422 |
0.429 |
|
| 2013 |
Wullschleger SD, Weston DJ, Difazio SP, Tuskan GA. Revisiting the sequencing of the first tree genome: Populus trichocarpa Tree Physiology. 33: 357-364. PMID 23100257 DOI: 10.1093/Treephys/Tps081 |
0.525 |
|
| 2012 |
Slavov GT, DiFazio SP, Martin J, Schackwitz W, Muchero W, Rodgers-Melnick E, Lipphardt MF, Pennacchio CP, Hellsten U, Pennacchio LA, Gunter LE, Ranjan P, Vining K, Pomraning KR, Wilhelm LJ, et al. Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa. The New Phytologist. 196: 713-25. PMID 22861491 DOI: 10.1111/J.1469-8137.2012.04258.X |
0.749 |
|
| 2012 |
Rodgers-Melnick E, Mane SP, Dharmawardhana P, Slavov GT, Crasta OR, Strauss SH, Brunner AM, Difazio SP. Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus. Genome Research. 22: 95-105. PMID 21974993 DOI: 10.1101/Gr.125146.111 |
0.741 |
|
| 2012 |
Tuskan GA, DiFazio S, Faivre-Rampant P, Gaudet M, Harfouche A, Jorge V, Labbé JL, Ranjan P, Sabatti M, Slavov G, Street N, Tschaplinski TJ, Yin T. The obscure events contributing to the evolution of an incipient sex chromosome in Populus: A retrospective working hypothesis Tree Genetics and Genomes. 8: 559-571. DOI: 10.1007/s11295-012-0495-6 |
0.479 |
|
| 2011 |
DiFazio S, Slavov G, Rodgers-Melnick E, Martin J, Schackwitz W, Priya R, Tuskan G. Inferring the evolutionary history of Populus trichocarpa from whole genome resequencing data Bmc Proceedings. 5. DOI: 10.1186/1753-6561-5-S7-O1 |
0.753 |
|
| 2011 |
Brunner A, Sheng X, Edwards J, Fujino T, Wang C, DiFazio S. Regulation of shoot-system development in Populus Bmc Proceedings. 5. DOI: 10.1186/1753-6561-5-S7-I11 |
0.389 |
|
| 2009 |
Islam-Faridi MN, Nelson CD, DiFazio SP, Gunter LE, Tuskan GA. Cytogenetic analysis of Populus trichocarpa - Ribosomal DNA, telomere repeat sequence, and marker-selected BACs Cytogenetic and Genome Research. 125: 74-80. PMID 19617699 DOI: 10.1159/000218749 |
0.335 |
|
| 2009 |
Yang X, Kalluri UC, DiFazio SP, Wullschleger SD, Tschaplinski TJ, Cheng ZM, Tuskan GA. Poplar genomics: State of the science Critical Reviews in Plant Sciences. 28: 285-308. DOI: 10.1080/07352680903241014 |
0.516 |
|
| 2008 |
Whitham TG, Difazio SP, Schweitzer JA, Shuster SM, Allan GJ, Bailey JK, Woolbright SA. Extending genomics to natural communities and ecosystems. Science (New York, N.Y.). 320: 492-5. PMID 18436780 DOI: 10.1126/Science.1153918 |
0.447 |
|
| 2008 |
Martin F, Aerts A, Ahrén D, Brun A, Danchin EG, Duchaussoy F, Gibon J, Kohler A, Lindquist E, Pereda V, Salamov A, Shapiro HJ, Wuyts J, Blaudez D, Buée M, ... ... DiFazio S, et al. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature. 452: 88-92. PMID 18322534 DOI: 10.1038/Nature06556 |
0.534 |
|
| 2008 |
Yin T, Difazio SP, Gunter LE, Zhang X, Sewell MM, Woolbright SA, Allan GJ, Kelleher CT, Douglas CJ, Wang M, Tuskan GA. Genome structure and emerging evidence of an incipient sex chromosome in Populus. Genome Research. 18: 422-30. PMID 18256239 DOI: 10.1101/Gr.7076308 |
0.444 |
|
| 2008 |
Woolbright SA, Difazio SP, Yin T, Martinsen GD, Zhang X, Allan GJ, Whitham TG, Keim P. A dense linkage map of hybrid cottonwood (Populus fremontii x P. angustifolia) contributes to long-term ecological research and comparison mapping in a model forest tree. Heredity. 100: 59-70. PMID 17895905 DOI: 10.1038/Sj.Hdy.6801063 |
0.473 |
|
| 2007 |
Kalluri UC, Difazio SP, Brunner AM, Tuskan GA. Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa. Bmc Plant Biology. 7: 59. PMID 17986329 DOI: 10.1186/1471-2229-7-59 |
0.374 |
|
| 2007 |
Brunner AM, DiFazio SP, Groover AT. Forest genomics grows up and branches out. The New Phytologist. 174: 710-3. PMID 17504453 DOI: 10.1111/J.1469-8137.2007.02083.X |
0.422 |
|
| 2007 |
Kelleher CT, Chiu R, Shin H, Bosdet IE, Krzywinski MI, Fjell CD, Wilkin J, Yin T, DiFazio SP, Ali J, Asano JK, Chan S, Cloutier A, Girn N, Leach S, et al. A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation. The Plant Journal : For Cell and Molecular Biology. 50: 1063-78. PMID 17488239 DOI: 10.1111/J.1365-313X.2007.03112.X |
0.424 |
|
| 2007 |
Brunner AM, Li J, DiFazio SP, Shevchenko O, Montgomery BE, Mohamed R, Wei H, Ma C, Elias AA, VanWormer K, Strauss SH. Genetic containment of forest plantations Tree Genetics and Genomes. 3: 75-100. DOI: 10.1007/S11295-006-0067-8 |
0.363 |
|
| 2006 |
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, et al. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science (New York, N.Y.). 313: 1596-604. PMID 16973872 DOI: 10.1126/Science.1128691 |
0.628 |
|
| 2005 |
DiFazio SP. A pioneer perspective on adaptation. Functional genomics of environmental adaptation in Populus: the 12th New Phytologist Symposium, Gatlinburg, TN, USA, October 2004. The New Phytologist. 165: 661-4. PMID 15720678 DOI: 10.1111/j.1469-8137.2005.01334.x |
0.349 |
|
| 2004 |
Yin TM, DiFazio SP, Gunter LE, Riemenschneider D, Tuskan GA. Large-scale heterospecific segregation distortion in Populus revealed by a dense genetic map Theoretical and Applied Genetics. 109: 451-463. PMID 15168022 |
0.395 |
|
| 2004 |
Tuskan GA, Difazio SP, Teichmann T. Poplar Genomics is Getting Popular: The Impact of the Poplar Genome Project on Tree Research Plant Biology. 6: 2-4. PMID 15095128 DOI: 10.1055/s-2003-44715 |
0.464 |
|
| 2004 |
Lammers P, Tuskan GA, DiFazio SP, Podila GK, Martin F. Mycorrhizal symbionts of Populus to be sequenced by the United States Department of Energy's Joint Genome Institute Mycorrhiza. 14: 63-64. PMID 14689288 DOI: 10.1007/S00572-003-0288-8 |
0.306 |
|
| 2004 |
Tuskan GA, Gunter LE, Yang ZK, Yin T, Sewell MM, DiFazio SP. Characterization of microsatellites revealed by genomic sequencing of Populus trichocarpa Canadian Journal of Forest Research. 34: 85-93. DOI: 10.1139/x03-283 |
0.446 |
|
| 2004 |
Yin TM, DiFazio SP, Gunter LE, Jawdy SS, Boerjan W, Tuskan GA. Genetic and physical mapping of Melampsora rust resistance genes in Populus and characterization of linkage disequilibrium and flanking genomic sequence New Phytologist. 164: 95-105. DOI: 10.1111/J.1469-8137.2004.01161.X |
0.468 |
|
| 2002 |
Wullschleger SD, Tuskan GA, DiFazio SP. Genomics and the tree physiologist Tree Physiology. 22: 1273-1276. PMID 12490424 |
0.431 |
|
| 2000 |
Brunner AM, Rottmann WH, Sheppard LA, Krutovskii K, DiFazio SP, Leonardi S, Strauss SH. Structure and expression of duplicate AGAMOUS orthologues in poplar Plant Molecular Biology. 44: 619-634. PMID 11198423 DOI: 10.1023/A:1026550205851 |
0.345 |
|
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