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Li-Jun Ma, Ph.D. - Publications

Affiliations: 
2000 SUNY College of Environmental Science and Forestry, Syracuse, NY, United States 
Area:
Microbiology Biology, Molecular Biology
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Yang H, Yu H, Ma LJ. Accessory Chromosomes in Fusarium oxysporum. Phytopathology. PMID 32692281 DOI: 10.1094/Phyto-03-20-0069-Ia  0.373
2020 Wang B, Yu H, Jia Y, Dong Q, Steinberg C, Alabouvette CL, Edel-Hermann V, Kistler HC, Ye K, Ma LJ, Guo L. Chromosome-scale genome assembly of strain Fo47, a fungal endophyte and biocontrol agent. Molecular Plant-Microbe Interactions : Mpmi. PMID 32552518 DOI: 10.1094/Mpmi-05-20-0116-A  0.36
2020 Yu H, Ayhan DH, Diener A, Ma L. Genome Sequence of Fusarium oxysporum f. sp. matthiolae, a Brassicaceae Pathogen. Molecular Plant-Microbe Interactions : Mpmi. PMID 31967942 DOI: 10.1094/Mpmi-11-19-0324-A  0.346
2019 Gao S, Gold SE, Wisecaver JH, Zhang Y, Guo L, Ma LJ, Rokas A, Glenn AE. Genome-wide analysis of Fusarium verticillioides reveals inter-kingdom contribution of horizontal gene transfer to the expansion of metabolism. Fungal Genetics and Biology : Fg & B. PMID 30953838 DOI: 10.1016/J.Fgb.2019.04.002  0.345
2018 Zhang Y, Guo L, Ma LJ. A Computational Protocol to Analyze Metatranscriptomic Data Capturing Fungal-Host Interactions. Methods in Molecular Biology (Clifton, N.J.). 1848: 207-233. PMID 30182238 DOI: 10.1007/978-1-4939-8724-5_15  0.341
2017 Jelinski N, Broz K, Jonkers W, Ma LJ, Kistler HC. Effector Gene Suites in Some Soil Isolates of Fusarium oxysporum Are not Sufficient Predictors of Vascular Wilt in Tomato. Phytopathology. PMID 28323535 DOI: 10.1094/Phyto-12-16-0437-R  0.328
2016 Guo L, Allen KS, Deiulio G, Zhang Y, Madeiras AM, Wick RL, Ma LJ. A De Novo-Assembly Based Data Analysis Pipeline for Plant Obligate Parasite Metatranscriptomic Studies. Frontiers in Plant Science. 7: 925. PMID 27462318 DOI: 10.3389/Fpls.2016.00925  0.378
2016 Williams AH, Sharma M, Thatcher LF, Azam S, Hane JK, Sperschneider J, Kidd BN, Anderson JP, Ghosh R, Garg G, Lichtenzveig J, Kistler HC, Shea T, Young S, Buck SA, ... ... Ma LJ, et al. Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. Bmc Genomics. 17: 191. PMID 26945779 DOI: 10.1186/S12864-016-2486-8  0.326
2015 Wyenandt CA, Simon JE, Pyne RM, Homa K, McGrath MT, Zhang S, Raid RN, Ma LJ, Wick R, Guo L, Madeiras A. Basil Downy Mildew (Peronospora belbahrii): Discoveries and Challenges Relative to Its Control. Phytopathology. PHYTO02150032FI. PMID 25894318 DOI: 10.1094/Phyto-02-15-0032-Fi  0.301
2014 Zhang Y, Zhang K, Fang A, Han Y, Yang J, Xue M, Bao J, Hu D, Zhou B, Sun X, Li S, Wen M, Yao N, Ma LJ, Liu Y, et al. Specific adaptation of Ustilaginoidea virens in occupying host florets revealed by comparative and functional genomics. Nature Communications. 5: 3849. PMID 24846013 DOI: 10.1038/Ncomms4849  0.398
2013 Manning VA, Pandelova I, Dhillon B, Wilhelm LJ, Goodwin SB, Berlin AM, Figueroa M, Freitag M, Hane JK, Henrissat B, Holman WH, Kodira CD, Martin J, Oliver RP, Robbertse B, ... ... Ma LJ, et al. Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence. G3 (Bethesda, Md.). 3: 41-63. PMID 23316438 DOI: 10.1534/G3.112.004044  0.418
2012 Amyotte SG, Tan X, Pennerman K, Jimenez-Gasco Mdel M, Klosterman SJ, Ma LJ, Dobinson KF, Veronese P. Transposable elements in phytopathogenic Verticillium spp.: insights into genome evolution and inter- and intra-specific diversification. Bmc Genomics. 13: 314. PMID 22800085 DOI: 10.1186/1471-2164-13-314  0.36
2011 Desjardins CA, Champion MD, Holder JW, Muszewska A, Goldberg J, Bailão AM, Brigido MM, Ferreira ME, Garcia AM, Grynberg M, Gujja S, Heiman DI, Henn MR, Kodira CD, León-Narváez H, ... ... Ma LJ, et al. Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis. Plos Genetics. 7: e1002345. PMID 22046142 DOI: 10.1371/Journal.Pgen.1002345  0.377
2011 Klosterman SJ, Subbarao KV, Kang S, Veronese P, Gold SE, Thomma BP, Chen Z, Henrissat B, Lee YH, Park J, Garcia-Pedrajas MD, Barbara DJ, Anchieta A, de Jonge R, Santhanam P, ... ... Ma LJ, et al. Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens. Plos Pathogens. 7: e1002137. PMID 21829347 DOI: 10.1371/Journal.Ppat.1002137  0.404
2011 Grabherr MG, Mauceli E, Ma LJ. Genome sequencing and assembly. Methods in Molecular Biology (Clifton, N.J.). 722: 1-9. PMID 21590409 DOI: 10.1007/978-1-61779-040-9_1  0.352
2011 Gao Q, Jin K, Ying SH, Zhang Y, Xiao G, Shang Y, Duan Z, Hu X, Xie XQ, Zhou G, Peng G, Luo Z, Huang W, Wang B, Fang W, ... ... Ma LJ, et al. Genome sequencing and comparative transcriptomics of the model entomopathogenic fungi Metarhizium anisopliae and M. acridum. Plos Genetics. 7: e1001264. PMID 21253567 DOI: 10.1371/Journal.Pgen.1001264  0.355
2011 Ma L, Bennett JW, Fedorova ND. Editorial: Fungal Biology in the Age of Genomics Mycology. 2: 117. DOI: 10.1080/21501203.2011.608173  0.315
2010 Ma LJ, Fedorova ND. A practical guide to fungal genome projects: Strategy, technology, cost and completion Mycology. 1: 9-24. DOI: 10.1080/21501201003680943  0.345
2009 Haas BJ, Kamoun S, Zody MC, Jiang RH, Handsaker RE, Cano LM, Grabherr M, Kodira CD, Raffaele S, Torto-Alalibo T, Bozkurt TO, Ah-Fong AM, Alvarado L, Anderson VL, Armstrong MR, ... ... Ma L, et al. Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. 461: 393-8. PMID 19741609 DOI: 10.1038/Nature08358  0.414
2009 Coleman JJ, Rounsley SD, Rodriguez-Carres M, Kuo A, Wasmann CC, Grimwood J, Schmutz J, Taga M, White GJ, Zhou S, Schwartz DC, Freitag M, Ma LJ, Danchin EG, Henrissat B, et al. The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion. Plos Genetics. 5: e1000618. PMID 19714214 DOI: 10.1371/Journal.Pgen.1000618  0.343
2006 Kämper J, Kahmann R, Bölker M, Ma LJ, Brefort T, Saville BJ, Banuett F, Kronstad JW, Gold SE, Müller O, Perlin MH, Wösten HA, de Vries R, Ruiz-Herrera J, Reynaga-Peña CG, et al. Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature. 444: 97-101. PMID 17080091 DOI: 10.1038/Nature05248  0.395
2006 Rep M, Duyvesteijn RG, Gale L, Usgaard T, Cornelissen BJ, Ma LJ, Ward TJ. The presence of GC-AG introns in Neurospora crassa and other euascomycetes determined from analyses of complete genomes: implications for automated gene prediction. Genomics. 87: 338-47. PMID 16406724 DOI: 10.1016/J.Ygeno.2005.11.014  0.309
2005 Galagan JE, Henn MR, Ma LJ, Cuomo CA, Birren B. Genomics of the fungal kingdom: insights into eukaryotic biology. Genome Research. 15: 1620-31. PMID 16339359 DOI: 10.1101/087969807.46.41  0.376
2005 Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, Thon M, Kulkarni R, Xu JR, Pan H, Read ND, Lee YI, Carbone I, Brown D, Yeon YO, ... ... Ma LJ, et al. The genome sequence of the rice blast fungus Magnaporthe grisea Nature. 434: 980-986. PMID 15846337 DOI: 10.1038/Nature03449  0.393
2004 Rogers SO, Theraisnathan V, Ma LJ, Zhao Y, Zhang G, Shin SG, Castello JD, Starmer WT. Comparisons of protocols for decontamination of environmental ice samples for biological and molecular examinations. Applied and Environmental Microbiology. 70: 2540-4. PMID 15066857 DOI: 10.1128/Aem.70.4.2540-2544.2004  0.511
2000 Ma L, Rogers SO, Catranis CM, Starmer WT. Detection and characterization of ancient fungi entrapped in glacial ice Mycologia. 92: 286-295. DOI: 10.2307/3761562  0.579
1999 Ma L, Catranis CM, Starmer WT, Rogers SO. Revival and characterization of fungi from ancient polar ice Mycologist. 13: 70-73. DOI: 10.1016/S0269-915X(99)80012-3  0.57
1999 Castello JD, Rogers SO, Starmer WT, Catranis CM, Ma L, Bachand GD, Zhao Y, Smith JE. Detection of tomato mosaic tobamovirus RNA in ancient glacial ice Polar Biology. 22: 207-212. DOI: 10.1007/S003000050411  0.568
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