Jonathan V. Sweedler, Ph.D. - Related publications

Affiliations: 
Chemistry University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
analytical neurochemistry
Website:
http://www.chemistry.illinois.edu/faculty/Jonathan_Sweedler.html
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Rabalski AJ, Williams JD, McClure RA, Vasudevan A, Baranczak A. A Dual-Purpose Bromocoumarin Tag Enables Deep Profiling of the Cellular Cysteinome. Proteomics. e1800433. PMID 30784174 DOI: 10.1002/pmic.201800433   
2019 Cao X, Flagg SC, Li X, Chennamsetty N, Balakrishnan G, Das TK. Quadrupole Dalton-Based Controlled Proteolysis Method for Characterization of Higher Order Protein Structure. Analytical Chemistry. PMID 30915848 DOI: 10.1021/acs.analchem.9b00306   
2019 Lin YH, Eguez RV, Torralba MG, Singh H, Golusinski P, Goliusinski W, Masternak M, Nelson KE, Freire M, Yu Y. Self-assembled STrap for global proteomics and salivary biomarker discovery. Journal of Proteome Research. PMID 30848925 DOI: 10.1021/acs.jproteome.9b00037   
2019 Wieczorek S, Combes F, Borges H, Burger T. Protein-Level Statistical Analysis of Quantitative Label-Free Proteomics Data with ProStaR. Methods in Molecular Biology (Clifton, N.J.). 1959: 225-246. PMID 30852826 DOI: 10.1007/978-1-4939-9164-8_15   
2019 Hughes CS, Sorensen PH, Morin GB. A Standardized and Reproducible Proteomics Protocol for Bottom-Up Quantitative Analysis of Protein Samples Using SP3 and Mass Spectrometry. Methods in Molecular Biology (Clifton, N.J.). 1959: 65-87. PMID 30852816 DOI: 10.1007/978-1-4939-9164-8_5   
2019 Tu M, Liu H, Cheng S, Mao F, Chen H, Fan F, Lu W, Du M. Identification and characterization of a novel casein anticoagulant peptide derived from in vivo digestion. Food & Function. PMID 30994118 DOI: 10.1039/c8fo02546k   
2019 Schmitt ND, Rawlins CM, Randall EC, Wang X, Koller A, Auclair JR, Kowalski JM, Kowalski PJ, Luther E, Ivanov AR, Agar NYR, Agar JN. Genetically Encoded Fluorescent Proteins Enable High-Throughput Assignment of Cell Cohorts Directly from MALDI-MS Images. Analytical Chemistry. PMID 30839199 DOI: 10.1021/acs.analchem.8b03454   
2019 Garcia-Vaquero M, Mora L, Hayes M. In Vitro and In Silico Approaches to Generating and Identifying Angiotensin-Converting Enzyme I Inhibitory Peptides from Green Macroalga . Marine Drugs. 17. PMID 30935056 DOI: 10.3390/md17040204   
2019 Ranganathan N, Li C, Suder T, Karanji AK, Li X, He Z, Valentine SJ, Li P. Capillary Vibrating Sharp-Edge Spray Ionization (cVSSI) for Voltage-Free Liquid Chromatography-Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 30793264 DOI: 10.1007/s13361-019-02147-0   
2019 Stopka SA, Samarah L, Shaw JB, Liyu AV, Veličković D, Agtuca BJ, Kukolj C, Koppenaal DW, Stacey G, Paša-Tolić L, Anderton CR, Vertes A. Ambient Metabolic Profiling and Imaging of Biological Samples with Ultrahigh Molecular Resolution using Laser Ablation Electrospray Ionization 21 Tesla FTICR Mass Spectrometry. Analytical Chemistry. PMID 30821434 DOI: 10.1021/acs.analchem.8b05084   
2019 Krieger JR, Wybenga-Groot LE, Tong J, Bache N, Tsao MS, Moran MF. Evosep One enables robust deep proteome coverage using tandem mass tags while significantly reducing instrument time. Journal of Proteome Research. PMID 30938160 DOI: 10.1021/acs.jproteome.9b00082   
2019 Baumeister TUH, Vallet M, Kaftan F, Svatoš A, Pohnert G. Live Single-Cell Metabolomics With Matrix-Free Laser/Desorption Ionization Mass Spectrometry to Address Microalgal Physiology. Frontiers in Plant Science. 10: 172. PMID 30833957 DOI: 10.3389/fpls.2019.00172   
2019 Pfammatter S, Bonneil E, McManus FP, Thibault P. Accurate quantitative proteomic analyses using metabolic labeling and High Field Asymmetric Waveform Ion Mobility Spectrometry (FAIMS). Journal of Proteome Research. PMID 30919622 DOI: 10.1021/acs.jproteome.9b00021   
2019 Mao J, You X, Qin H, Wang C, Wang L, Ye M. A New Searching Strategy for the Identification of O-linked Glycopeptides. Analytical Chemistry. PMID 30802037 DOI: 10.1021/acs.analchem.8b04184   
2019 Kraut A, Louwagie M, Bruley C, Masselon C, Couté Y, Brun V, Hesse AM. Protein Biomarker Discovery in Non-depleted Serum by Spectral Library-Based Data-Independent Acquisition Mass Spectrometry. Methods in Molecular Biology (Clifton, N.J.). 1959: 129-150. PMID 30852820 DOI: 10.1007/978-1-4939-9164-8_9   
2019 Nielson CM, Jacobs JM, Orwoll ES. Proteomic studies of bone and skeletal health outcomes. Bone. PMID 30954730 DOI: 10.1016/j.bone.2019.03.032   
2019 Yi L, Tsai CF, Dirice E, Swensen AC, Chen J, Shi T, Gritsenko MA, Chu RK, Piehowski PD, Smith RD, Rodland KD, Atkinson MA, Mathews CE, Kulkarni RN, Liu T, et al. A Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells. Analytical Chemistry. PMID 30843680 DOI: 10.1021/acs.analchem.9b00024   
2019 Zecha J, Satpathy S, Kanashova T, Avanessian SC, Kane MH, Clauser KR, Mertins P, Carr SA, Kuster B. TMT labeling for the masses: A robust and cost-efficient, in-solution labeling approach. Molecular & Cellular Proteomics : McP. PMID 30967486 DOI: 10.1074/mcp.TIR119.001385   
2019 Szymczak L, Mrksich M. Using Peptide Arrays to Discover the Sequence-Specific Acetylation of the Histidine-Tyrosine Dyad. Biochemistry. PMID 30817132 DOI: 10.1021/acs.biochem.9b00022   
2019 Liu N, Tengstrand E, Boernsen O, Bek S, Hsieh F. Validation of a multiplexed LC-MS/MS clinical assay to quantify insulin growth factor binding proteins in human serum and its application in a clinical study. Toxicology and Applied Pharmacology. PMID 30926377 DOI: 10.1016/j.taap.2019.03.024   
2019 Bruderer R, Muntel J, Müller S, Bernhardt OM, Gandhi T, Cominetti O, Macron C, Carayol J, Rinner O, Astrup A, Saris WHM, Hager J, Valsesia A, Dayon L, Reiter L. Analysis of 1508 plasma samples by capillary flow data-independent acquisition profiles proteomics of weight loss and maintenance. Molecular & Cellular Proteomics : McP. PMID 30948622 DOI: 10.1074/mcp.RA118.001288   
2019 Zhang P, Shao X, Wang Z, Jia C. [Identification of mouse organ endogenous peptides by high throughput mass spectrometry]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 35: 697-706. PMID 31001955 DOI: 10.13345/j.cjb.180377   
2019 Stahl-Zeng J, Sage A, Taylor P, Netto JD, Zhang T. Advances in LC-MS/MS Methods for Allergen Testing, Meat Speciation, and Gelatin Speciation. Journal of Aoac International. PMID 30940288 DOI: 10.5740/jaoacint.19-0059   
2019 Fischer M, Muth T, Renard BY. Peptide-to-Protein Summarization: An Important Step for Accurate Quantification in Label-Based Proteomics. Methods in Molecular Biology (Clifton, N.J.). 1977: 159-180. PMID 30980328 DOI: 10.1007/978-1-4939-9232-4_11   
2019 Li Y, Yang Y, Shao B, Zou Y, Song Y, Shu L, Liang Q, Han N. [Asymmetrical flow field flow fractionation combined with ultra-performance liquid chromatography-quadrupole time-of-flight mass spectrometry used to screen allergen protein epitopes]. SE Pu = Chinese Journal of Chromatography. 37: 398-403. PMID 30977342 DOI: 10.3724/SP.J.1123.2018.11047   
2019 Stepek IA, Cao T, Koetemann A, Shimura S, Wollscheid B, Bode JW. Antibiotic discovery with synthetic fermentation: library assembly, phenotypic screening, and mechanism of action of beta-peptides targeting penicillin-binding proteins. Acs Chemical Biology. PMID 30990649 DOI: 10.1021/acschembio.9b00227   
2019 López-Morales CA, Vázquez-Leyva S, Vallejo-Castillo L, Carballo-Uicab G, Muñoz-García L, Herbert-Pucheta JE, Zepeda-Vallejo LG, Velasco-Velázquez M, Pavón L, Pérez-Tapia SM, Medina-Rivero E. Determination of Peptide Profile Consistency and Safety of Collagen Hydrolysates as Quality Attributes. Journal of Food Science. PMID 30768685 DOI: 10.1111/1750-3841.14466   
2019 Nolan AN, Mead RJ, Maker G, Bringans S, Chapman B, Speers SJ. Examination of the temporal variation of peptide content in decomposition fluid under controlled conditions using pigs as human substitutes. Forensic Science International. 298: 161-168. PMID 30909103 DOI: 10.1016/j.forsciint.2019.02.048   
2019 Lombard-Banek C, Yu Z, Swiercz AP, Marvar PJ, Nemes P. A microanalytical capillary electrophoresis mass spectrometry assay for quantifying angiotensin peptides in the brain. Analytical and Bioanalytical Chemistry. PMID 30953113 DOI: 10.1007/s00216-019-01771-9   
2019 Zhang Y, Zhao W, Wang D, Zhang H, Chai G, Zhang Q, Lu B, Sun S, Zhang J. Direct Analysis of Carbonyl Compounds by Mass Spectrometry with Double Region Atmospheric Pressure Chemical Ionization. Analytical Chemistry. PMID 30951291 DOI: 10.1021/acs.analchem.8b05834   
2019 Khare P, Marcotte A, Sheu R, Walsh AN, Ditto JC, Gentner DR. Advances in offline approaches for trace measurements of complex organic compound mixtures via soft ionization and high-resolution tandem mass spectrometry. Journal of Chromatography. A. PMID 30928166 DOI: 10.1016/j.chroma.2019.03.037   
2019 Liu Y, Wang X, Chen Z, Liang DH, Sun K, Huang S, Zhu J, Shi X, Zeng J, Wang Q, Zhang B. Towards a high peak capacity of 130 using nanoflow hydrophilic interaction liquid chromatography. Analytica Chimica Acta. 1062: 147-155. PMID 30947991 DOI: 10.1016/j.aca.2019.01.060   
2019 Cortes L, Wopereis H, Tartiere A, Piquenot J, Gouw JW, Tims S, Knol J, Chelsky D. Metaproteomic and 16S rRNA Gene Sequencing Analysis of the Infant Fecal Microbiome. International Journal of Molecular Sciences. 20. PMID 30901843 DOI: 10.3390/ijms20061430   
2019 Zhang W, Hankemeier T, Ramautar R. Capillary Electrophoresis-Mass Spectrometry for Metabolic Profiling of Biomass-Limited Samples. Methods in Molecular Biology (Clifton, N.J.). 1972: 165-172. PMID 30847790 DOI: 10.1007/978-1-4939-9213-3_11   
2019 Schniers A, Pasing Y, Hansen T. Lys-C/Trypsin Tandem-Digestion Protocol for Gel-Free Proteomic Analysis of Colon Biopsies. Methods in Molecular Biology (Clifton, N.J.). 1959: 113-122. PMID 30852818 DOI: 10.1007/978-1-4939-9164-8_7   
2019 DeLaney K, Li L. A Data Independent Acquisition Mass Spectrometry Method for Improved Neuropeptidomic Coverage in Crustacean Neural Tissue Extracts. Analytical Chemistry. PMID 30888792 DOI: 10.1021/acs.analchem.8b05734   
2019 Taga Y, Iwasaki Y, Shigemura Y, Mizuno K. Improved in Vivo Tracking of Orally Administered Collagen Hydrolysate Using Stable Isotope Labeling and LC-MS Techniques. Journal of Agricultural and Food Chemistry. PMID 30929424 DOI: 10.1021/acs.jafc.9b00571   
2019 Solakyildirim K. Recent advances in glycosaminoglycan analysis by various mass spectrometry techniques. Analytical and Bioanalytical Chemistry. PMID 30911798 DOI: 10.1007/s00216-019-01722-4   
2019 Caprioli RM. Imaging Mass Spectrometry: A Perspective. Journal of Biomolecular Techniques : Jbt. PMID 30918475 DOI: 10.7171/jbt.19-3001-002   
2019 Li C, Li K, Chen T, Zhu Y, He Q. SW-Tandem: A Highly Efficient Tool for Large-Scale Peptide Sequencing with Parallel Spectrum Dot Product on Sunway TaihuLight. Bioinformatics (Oxford, England). PMID 30821318 DOI: 10.1093/bioinformatics/btz147   
2019 Konno K, Kazuma K, Rangel M, Stolarz-de-Oliveira J, Fontana R, Kawano M, Fuchino H, Hide I, Yasuhara T, Nakata Y. New Mastoparan Peptides in the Venom of the Solitary Eumenine Wasp . Toxins. 11. PMID 30857348 DOI: 10.3390/toxins11030155   
2019 Chiang CH, Lee HH, Chen BH, Lin YC, Chao YY, Huang YL. Using ambient mass spectrometry and LC-MS/MS for the rapid detection and identification of multiple illicit street drugs. Journal of Food and Drug Analysis. 27: 439-450. PMID 30987715 DOI: 10.1016/j.jfda.2018.11.003   
2019 Jiang Y, Zhang S, Zhang X, Li N, Zhang Q, Guo X, Chi X, Tong M. Peptidomic analysis of zebrafish embryos exposed to polychlorinated biphenyls and their impact on eye development. Ecotoxicology and Environmental Safety. 175: 164-172. PMID 30897415 DOI: 10.1016/j.ecoenv.2019.03.015   
2019 Coelho Graça D, Hartmer R, Jabs W, Scherl A, Clerici L, Samii K, Tsybin YO, Hochstrasser D, Lescuyer P. Detection of Proteoforms Using Top-Down Mass Spectrometry and Diagnostic Ions. Methods in Molecular Biology (Clifton, N.J.). 1959: 173-183. PMID 30852823 DOI: 10.1007/978-1-4939-9164-8_12   
2019 Tharakan R, Kreimer S, Ubaida-Mohien C, Lavoie J, Olexiouk V, Menschaert G, Ingolia NT, Cole RN, Ishizuka K, Sawa A, Nucifora LG. A methodology for discovering novel brain-relevant peptides: Combination of ribosome profiling and peptidomics. Neuroscience Research. PMID 30862443 DOI: 10.1016/j.neures.2019.02.006   
2019 Barry JA, Ait-Belkacem R, Hardesty WM, Benakli L, Andonian C, Licea-Perez H, Stauber J, Castellino S. Multicenter Validation Study of Quantitative Imaging Mass Spectrometry. Analytical Chemistry. PMID 30938516 DOI: 10.1021/acs.analchem.9b01016   
2019 Xu Y, Yang L, Li P, Gu Q. Heterologous expression of Class IIb bacteriocin Plantaricin JK in Lactococcus Lactis. Protein Expression and Purification. PMID 30807850 DOI: 10.1016/j.pep.2019.02.013   
2019 Wang Q, Borotto NB, Håkansson K. Gas-Phase Hydrogen/Deuterium Scrambling in Negative-Ion Mode Tandem Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 30805882 DOI: 10.1007/s13361-019-02143-4   
2019 Korte AR, Morris N, Vertes A. High Throughput Complementary Analysis and Quantitation of Metabolites by MALDI- and Silicon Nanopost Array-Laser Desorption Ionization Mass Spectrometry. Analytical Chemistry. PMID 30786207 DOI: 10.1021/acs.analchem.8b05074   
2019 Ma WT, Liu ZY, Chen XZ, Lin ZL, Zheng ZB, Miao WG, Xie SQ. A protein identification algorithm for tandem mass spectrometry by incorporating the abundance of mRNA into a binomial probability scoring model. Journal of Proteomics. PMID 30790687 DOI: 10.1016/j.jprot.2019.02.010