Nilhan Gunhanlar - Related publications

Affiliations: 
Psychiatry Erasmus Medical Center Rotterdam, Rotterdam, Netherlands 
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Fang H, Disteche CM, Berletch JB. X Inactivation and Escape: Epigenetic and Structural Features. Frontiers in Cell and Developmental Biology. 7: 219. PMID 31632970 DOI: 10.3389/fcell.2019.00219   
2019 Ferrari R, de Llobet Cucalon LI, Di Vona C, Le Dilly F, Vidal E, Lioutas A, Oliete JQ, Jochem L, Cutts E, Dieci G, Vannini A, Teichmann M, de la Luna S, Beato M. TFIIIC Binding to Alu Elements Controls Gene Expression via Chromatin Looping and Histone Acetylation. Molecular Cell. PMID 31759822 DOI: 10.1016/j.molcel.2019.10.020   
2019 Brumbaugh J, Kim IS, Ji F, Huebner AJ, Di Stefano B, Schwarz BA, Charlton J, Coffey A, Choi J, Walsh RM, Schindler JW, Anselmo A, Meissner A, Sadreyev RI, Bernstein BE, et al. Inducible histone K-to-M mutations are dynamic tools to probe the physiological role of site-specific histone methylation in vitro and in vivo. Nature Cell Biology. PMID 31659274 DOI: 10.1038/s41556-019-0403-5   
2019 Hu M, Depledge DP, Flores Cortes E, Breuer J, Schang LM. Chromatin dynamics and the transcriptional competence of HSV-1 genomes during lytic infections. Plos Pathogens. 15: e1008076. PMID 31725813 DOI: 10.1371/journal.ppat.1008076   
2019 Lhoumaud P, Badri S, Rodriguez-Hernaez J, Sakellaropoulos T, Sethia G, Kloetgen A, Cornwell M, Bhattacharyya S, Ay F, Bonneau R, Tsirigos A, Skok JA. NSD2 overexpression drives clustered chromatin and transcriptional changes in a subset of insulated domains. Nature Communications. 10: 4843. PMID 31649247 DOI: 10.1038/s41467-019-12811-4   
2019 Liu Y, Zhang Y, Yin J, Gao Y, Li Y, Bai D, He W, Li X, Zhang P, Li R, Zhang L, Jia Y, Zhang Y, Lin J, Zheng Y, et al. Distinct H3K9me3 and DNA methylation modifications during mouse spermatogenesis. The Journal of Biological Chemistry. PMID 31662436 DOI: 10.1074/jbc.RA119.010496   
2019 Yukawa M, Jagannathan S, Vallabh S, Kartashov AV, Chen X, Weirauch MT, Barski A. AP-1 activity induced by co-stimulation is required for chromatin opening during T cell activation. The Journal of Experimental Medicine. PMID 31653690 DOI: 10.1084/jem.20182009   
2019 Lee J, Lee JJ, Jeon J. A histone deacetylase, MoHOS2 regulates asexual development and virulence in the rice blast fungus. Journal of Microbiology (Seoul, Korea). 57: 1115-1125. PMID 31758396 DOI: 10.1007/s12275-019-9363-5   
2019 Wei W, Hennig BP, Wang J, Zhang Y, Piazza I, Pareja Sanchez Y, Chabbert CD, Adjalley SH, Steinmetz LM, Pelechano V. Chromatin-sensitive cryptic promoters putatively drive expression of alternative protein isoforms in yeast. Genome Research. PMID 31740578 DOI: 10.1101/gr.243378.118   
2019 Desai D, Pethe P. Polycomb repressive complex 1: Regulators of neurogenesis from embryonic to adult stage. Journal of Cellular Physiology. PMID 31608994 DOI: 10.1002/jcp.29299   
2019 Agrawal A, Ganai N, Sengupta S, Menon GI. Nonequilibrium Biophysical Processes Influence the Large-Scale Architecture of the Cell Nucleus. Biophysical Journal. PMID 31818465 DOI: 10.1016/j.bpj.2019.11.017   
2019 Gryder BE, Pomella S, Sayers C, Wu XS, Song Y, Chiarella AM, Bagchi S, Chou HC, Sinniah RS, Walton A, Wen X, Rota R, Hathaway NA, Zhao K, Chen J, et al. Histone hyperacetylation disrupts core gene regulatory architecture in rhabdomyosarcoma. Nature Genetics. 51: 1714-1722. PMID 31784732 DOI: 10.1038/s41588-019-0534-4   
2019 Karkhanis V, Alinari L, Ozer HG, Chung J, Zhang X, Sif S, Baiocchi RA. Protein arginine methyltransferase 5 represses tumor suppressor miRNAs that down-regulate CYCLIN D1 and c-MYC expression in aggressive B-cell lymphoma. The Journal of Biological Chemistry. PMID 31822509 DOI: 10.1074/jbc.RA119.008742   
2019 Kalmbach A, Schröder C, Klein-Hitpass L, Nordström K, Ulz P, Heitzer E, Speicher MR, Rahmann S, Wieczorek D, Horsthemke B, Bramswig NC. Genome-Wide Analysis of the Nucleosome Landscape in Individuals with Coffin-Siris Syndrome. Cytogenetic and Genome Research. PMID 31658463 DOI: 10.1159/000503266   
2019 Bagchi DN, Battenhouse AM, Park D, Iyer VR. The histone variant H2A.Z in yeast is almost exclusively incorporated into the +1 nucleosome in the direction of transcription. Nucleic Acids Research. PMID 31722407 DOI: 10.1093/nar/gkz1075   
2019 Choi S, Pfleger J, Jeon YH, Yang Z, He M, Shin H, Sayed D, Astrof S, Abdellatif M. Oxoglutarate dehydrogenase and acetyl-CoA acyltransferase 2 selectively associate with H2A.Z-occupied promoters and are required for histone modifications. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 194436. PMID 31682939 DOI: 10.1016/j.bbagrm.2019.194436   
2019 Yang X, Bam M, Nagarkatti PS, Nagarkatti M. Cannabidiol Regulates Gene Expression in Encephalitogenic T cells Using Histone Methylation and noncoding RNA during Experimental Autoimmune Encephalomyelitis. Scientific Reports. 9: 15780. PMID 31673072 DOI: 10.1038/s41598-019-52362-8   
2019 Kuhn TM, Capelson M. Nuclear Pore Proteins in Regulation of Chromatin State. Cells. 8. PMID 31717499 DOI: 10.3390/cells8111414   
2019 Jaiswal D, Turniansky R, Moresco JJ, Ikram S, Ramaprasad G, Akinwole A, Wolf J, Yates JR, Green EM. Function of the MYND domain and C-terminal region in regulating the subcellular localization and catalytic activity of the SMYD family lysine methyltransferase Set5. Molecular and Cellular Biology. PMID 31685550 DOI: 10.1128/MCB.00341-19   
2019 Cheutin T, Cavalli G. The multiscale effects of polycomb mechanisms on 3D chromatin folding. Critical Reviews in Biochemistry and Molecular Biology. 1-19. PMID 31698957 DOI: 10.1080/10409238.2019.1679082   
2019 Gowans GJ, Bridgers JB, Zhang J, Dronamraju R, Burnetti A, King DA, Thiengmany AV, Shinsky SA, Bhanu NV, Garcia BA, Buchler NE, Strahl BD, Morrison AJ. Recognition of Histone Crotonylation by Taf14 Links Metabolic State to Gene Expression. Molecular Cell. PMID 31676231 DOI: 10.1016/j.molcel.2019.09.029   
2019 Choi J, Lyons DB, Kim MY, Moore JD, Zilberman D. DNA Methylation and Histone H1 Jointly Repress Transposable Elements and Aberrant Intragenic Transcripts. Molecular Cell. PMID 31732458 DOI: 10.1016/j.molcel.2019.10.011   
2019 Wooten M, Ranjan R, Chen X. Asymmetric Histone Inheritance in Asymmetrically Dividing Stem Cells. Trends in Genetics : Tig. PMID 31753528 DOI: 10.1016/j.tig.2019.10.004   
2019 Yoon J, Cho LH, Lee S, Pasriga R, Tun W, Yang J, Yoon H, Jeong HJ, Jeon JS, An G. Chromatin Interacting Factor OsVIL2 Is Required for Outgrowth of Axillary Buds in Ric. Molecules and Cells. PMID 31771322 DOI: 10.14348/molcells.2019.0141   
2019 Babokhov M, Hibino K, Itoh Y, Maeshima K. Local chromatin motion and transcription. Journal of Molecular Biology. PMID 31689435 DOI: 10.1016/j.jmb.2019.10.018   
2019 Clark SC, Chereji RV, Lee PR, Fields RD, Clark DJ. Differential Nucleosome Spacing in Neurons and Glia. Neuroscience Letters. 134559. PMID 31639421 DOI: 10.1016/j.neulet.2019.134559   
2019 Guo L, Chen J, Wang Q, Zhang J, Huang W. Oridonin enhances γ‑globin expression in erythroid precursors from patients with β‑thalassemia via activation of p38 MAPK signaling. Molecular Medicine Reports. PMID 31789406 DOI: 10.3892/mmr.2019.10848   
2019 Fahrner JA, Bjornsson HT. Mendelian disorders of the epigenetic machinery: postnatal malleability and therapeutic prospects. Human Molecular Genetics. PMID 31595951 DOI: 10.1093/hmg/ddz174   
2019 Huo X, Ji L, Zhang Y, Lv P, Cao X, Wang Q, Yan Z, Dong S, Du D, Zhang F, Wei G, Liu Y, Wen B. The Nuclear Matrix Protein SAFB Cooperates with Major Satellite RNAs to Stabilize Heterochromatin Architecture Partially through Phase Separation. Molecular Cell. PMID 31677973 DOI: 10.1016/j.molcel.2019.10.001   
2019 Luense LJ, Donahue G, Lin-Shiao E, Rangel R, Weller AH, Bartolomei MS, Berger SL. Gcn5-Mediated Histone Acetylation Governs Nucleosome Dynamics in Spermiogenesis. Developmental Cell. PMID 31761669 DOI: 10.1016/j.devcel.2019.10.024   
2019 Song S, Perez JV, Svitko W, Ricketts MD, Dean E, Schultz D, Marmorstein R, Johnson FB. Rap1-mediated nucleosome displacement can regulate gene expression in senescent cells without impacting the pace of senescence. Aging Cell. e13061. PMID 31742863 DOI: 10.1111/acel.13061   
2019 Dong J, Wang X, Cao C, Wen Y, Sakashita A, Chen S, Zhang J, Zhang Y, Zhou L, Luo M, Liu M, Liao A, Namekawa SH, Yuan S. UHRF1 suppresses retrotransposons and cooperates with PRMT5 and PIWI proteins in male germ cells. Nature Communications. 10: 4705. PMID 31624244 DOI: 10.1038/s41467-019-12455-4   
2019 Ngwa CJ, Kiesow MJ, Orchard LM, Farrukh A, Llinás M, Pradel G. The G9a Histone Methyltransferase Inhibitor BIX-01294 Modulates Gene Expression during Gametocyte Development and Transmission. International Journal of Molecular Sciences. 20. PMID 31615031 DOI: 10.3390/ijms20205087   
2019 Montaldo NP, Bordin DL, Brambilla A, Rösinger M, Fordyce Martin SL, Bjørås KØ, Bradamante S, Aas PA, Furrer A, Olsen LC, Kunath N, Otterlei M, Sætrom P, Bjørås M, Samson LD, et al. Alkyladenine DNA glycosylase associates with transcription elongation to coordinate DNA repair with gene expression. Nature Communications. 10: 5460. PMID 31784530 DOI: 10.1038/s41467-019-13394-w   
2019 Resnick R, Wong CJ, Hamm DC, Bennett SR, Skene PJ, Hake SB, Henikoff S, van der Maarel SM, Tapscott SJ. DUX4-Induced Histone Variants H3.X and H3.Y Mark DUX4 Target Genes for Expression. Cell Reports. 29: 1812-1820.e5. PMID 31722199 DOI: 10.1016/j.celrep.2019.10.025   
2019 Zhang M, Hill MC, Kadow ZA, Suh JH, Tucker NR, Hall AW, Tran TT, Swinton PS, Leach JP, Margulies KB, Ellinor PT, Li N, Martin JF. Long-range enhancer-promoter interactions prevent predisposition to atrial fibrillation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31636200 DOI: 10.1073/pnas.1907418116   
2019 Mivelaz M, Cao AM, Kubik S, Zencir S, Hovius R, Boichenko I, Stachowicz AM, Kurat CF, Shore D, Fierz B. Chromatin Fiber Invasion and Nucleosome Displacement by the Rap1 Transcription Factor. Molecular Cell. PMID 31761495 DOI: 10.1016/j.molcel.2019.10.025   
2019 Kumari N, Hassan MA, Lu X, Roeder RG, Biswas D. AFF1 acetylation by p300 temporally inhibits transcription during genotoxic stress response. Proceedings of the National Academy of Sciences of the United States of America. PMID 31611376 DOI: 10.1073/pnas.1907097116   
2019 Albig C, Wang C, Dann GP, Wojcik F, Schauer T, Krause S, Maenner S, Cai W, Li Y, Girton J, Muir TW, Johansen J, Johansen KM, Becker PB, Regnard C. JASPer controls interphase histone H3S10 phosphorylation by chromosomal kinase JIL-1 in Drosophila. Nature Communications. 10: 5343. PMID 31767855 DOI: 10.1038/s41467-019-13174-6   
2019 Zhang Y, Wang L, Liang S, Zhang P, Kang R, Zhang M, Wang M, Chen L, Yuan H, Ding S, Li H. FpDep1, a component of Rpd3L histone deacetylase complex, is important for vegetative development, ROS accumulation, and pathogenesis in Fusarium pseudograminearum. Fungal Genetics and Biology : Fg & B. 103299. PMID 31706014 DOI: 10.1016/j.fgb.2019.103299   
2019 Wang Y, Liu H, Liu X, Zhang X, Wu J, Yuan L, Du X, Wang R, Ma Y, Chen X, Cheng X, Zhuang D, Zhang H. Histone acetylation plays an important role in MC-LR-induced apoptosis and cycle disorder in SD rat testicular cells. Chemosphere. 241: 125073. PMID 31683423 DOI: 10.1016/j.chemosphere.2019.125073   
2019 MacPherson L, Anokye J, Yeung MM, Lam EYN, Chan YC, Weng CF, Yeh P, Knezevic K, Butler MS, Hoegl A, Chan KL, Burr ML, Gearing LJ, Willson T, Liu J, et al. HBO1 is required for the maintenance of leukaemia stem cells. Nature. PMID 31827282 DOI: 10.1038/s41586-019-1835-6   
2019 Wu Z, Fang X, Zhu D, Dean C. Autonomous pathway: FLOWERING LOCUS C repression through an antisense-mediated chromatin silencing mechanism. Plant Physiology. PMID 31740502 DOI: 10.1104/pp.19.01009   
2019 Jethmalani Y, Green EM. Using yeast to define the regulatory role of protein methylation. Current Protein & Peptide Science. PMID 31642774 DOI: 10.2174/1389203720666191023150727   
2019 Spracklin G, Pradhan S. Protect-seq: genome-wide profiling of nuclease inaccessible domains reveals physical properties of chromatin. Nucleic Acids Research. PMID 31819993 DOI: 10.1093/nar/gkz1150   
2019 Deevy O, Bracken AP. PRC2 functions in development and congenital disorders. Development (Cambridge, England). 146. PMID 31575610 DOI: 10.1242/dev.181354   
2019 Zhang D, Tang Z, Huang H, Zhou G, Cui C, Weng Y, Liu W, Kim S, Lee S, Perez-Neut M, Ding J, Czyz D, Hu R, Ye Z, He M, et al. Metabolic regulation of gene expression by histone lactylation. Nature. 574: 575-580. PMID 31645732 DOI: 10.1038/s41586-019-1678-1   
2019 Campbell JB, Edwards MJ, Ozersky SA, Duina AA. Evidence that dissociation of Spt16 from transcribed genes is partially dependent on RNA Polymerase II termination. Transcription. 1-12. PMID 31809228 DOI: 10.1080/21541264.2019.1685837   
2019 Owens N, Papadopoulou T, Festuccia N, Tachtsidi A, Gonzalez I, Dubois A, Vandormael-Pournin S, Nora EP, Bruneau B, Cohen-Tannoudji M, Navarro P. CTCF confers local nucleosome resiliency after DNA replication and during mitosis. Elife. 8. PMID 31599722 DOI: 10.7554/eLife.47898   
2019 Liu B, Chen S, Rose A, Chen D, Cao F, Zwinderman M, Kiemel D, Aïssi M, Dekker FJ, Haisma HJ. Inhibition of histone deacetylase 1 (HDAC1) and HDAC2 enhances CRISPR/Cas9 genome editing. Nucleic Acids Research. PMID 31799598 DOI: 10.1093/nar/gkz1136