| Year |
Citation |
Score |
| 2020 |
Mattioni A, Boldt K, Auciello G, Komada M, Rappoport JZ, Ueffing M, Castagnoli L, Cesareni G, Santonico E. Ring Finger Protein 11 acts on ligand-activated EGFR via the direct interaction with the UIM region of ANKRD13 protein family. The Febs Journal. PMID 31985874 DOI: 10.1111/febs.15226 |
0.319 |
|
| 2019 |
Perfetto L, Acencio ML, Bradley G, Cesareni G, Del Toro N, Fazekas D, Hermjakob H, Korcsmaros T, Kuiper M, Lægreid A, Lo Surdo P, Lovering RC, Orchard S, Porras P, Thomas PD, et al. CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination. Bioinformatics (Oxford, England). PMID 30793173 DOI: 10.1093/Bioinformatics/Btz132 |
0.325 |
|
| 2019 |
Calderone A, Cesareni G. SPV: a JavaScript Signaling Pathway Visualizer. Bioinformatics (Oxford, England). 34: 2684-2686. PMID 29590303 DOI: 10.1093/bioinformatics/bty188 |
0.313 |
|
| 2018 |
Sivade Dumousseau M, Alonso-López D, Ammari M, Bradley G, Campbell NH, Ceol A, Cesareni G, Combe C, De Las Rivas J, Del-Toro N, Heimbach J, Hermjakob H, Jurisica I, Koch M, Licata L, et al. Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions. Bmc Bioinformatics. 19: 134. PMID 29642841 DOI: 10.1186/S12859-018-2118-1 |
0.409 |
|
| 2018 |
Tinti M, Panni S, Cesareni G. Profiling Phosphopeptide-Binding Domain Recognition Specificity Using Peptide Microarrays. Methods in Molecular Biology (Clifton, N.J.). 1518: 177-193. PMID 27873207 DOI: 10.1007/978-1-4939-6584-7_12 |
0.343 |
|
| 2017 |
Lo Surdo P, Calderone A, Cesareni G, Perfetto L. SIGNOR: A Database of Causal Relationships Between Biological Entities-A Short Guide to Searching and Browsing. Current Protocols in Bioinformatics. 58: 8.23.1-8.23.16. PMID 28654729 DOI: 10.1002/cpbi.28 |
0.334 |
|
| 2015 |
Santonico E, Mattioni A, Panni S, Belleudi F, Mattei M, Torrisi MR, Cesareni G, Castagnoli L. RNF11 is a GGA protein cargo and acts as a molecular adaptor for GGA3 ubiquitination mediated by Itch. Oncogene. 34: 3377-90. PMID 25195858 DOI: 10.1038/Onc.2014.256 |
0.35 |
|
| 2014 |
Pallucca R, Visconti S, Camoni L, Cesareni G, Melino S, Panni S, Torreri P, Aducci P. Specificity of ε and non-ε isoforms of arabidopsis 14-3-3 proteins towards the H+-ATPase and other targets. Plos One. 9: e90764. PMID 24603559 DOI: 10.1371/Journal.Pone.0090764 |
0.41 |
|
| 2012 |
Sacco F, Perfetto L, Castagnoli L, Cesareni G. The human phosphatase interactome: An intricate family portrait. Febs Letters. 586: 2732-9. PMID 22626554 DOI: 10.1016/j.febslet.2012.05.008 |
0.327 |
|
| 2012 |
Orchard S, Kerrien S, Abbani S, Aranda B, Bhate J, Bidwell S, Bridge A, Briganti L, Brinkman FS, Brinkman F, Cesareni G, Chatr-aryamontri A, Chautard E, Chen C, Dumousseau M, et al. Protein interaction data curation: the International Molecular Exchange (IMEx) consortium. Nature Methods. 9: 345-50. PMID 22453911 DOI: 10.1038/Nmeth.1931 |
0.31 |
|
| 2012 |
Licata L, Briganti L, Peluso D, Perfetto L, Iannuccelli M, Galeota E, Sacco F, Palma A, Nardozza AP, Santonico E, Castagnoli L, Cesareni G. MINT, the molecular interaction database: 2012 update. Nucleic Acids Research. 40: D857-61. PMID 22096227 DOI: 10.1093/nar/gkr930 |
0.356 |
|
| 2012 |
Carducci M, Perfetto L, Briganti L, Paoluzi S, Costa S, Zerweck J, Schutkowski M, Castagnoli L, Cesareni G. The protein interaction network mediated by human SH3 domains. Biotechnology Advances. 30: 4-15. PMID 21740962 DOI: 10.1016/j.biotechadv.2011.06.012 |
0.392 |
|
| 2012 |
Orchard S, Kerrien S, Abbani S, Aranda B, Bhate J, Bidwell S, Bridge A, Briganti L, Brinkman F, Cesareni G, Chatr-Aryamontri A, Chautard E, Chen C, Dumousseau M, Goll J, et al. Corrigendum: Protein interaction data curation: The International Molecular Exchange (IMEx) consortium (Nature Methods (2012) 9, (345-350)) Nature Methods. 9: 626. DOI: 10.1038/Nmeth0612-626A |
0.34 |
|
| 2011 |
Aranda B, Blankenburg H, Kerrien S, Brinkman FS, Ceol A, Chautard E, Dana JM, De Las Rivas J, Dumousseau M, Galeota E, Gaulton A, Goll J, Hancock RE, Isserlin R, Jimenez RC, ... ... Cesareni G, et al. PSICQUIC and PSISCORE: accessing and scoring molecular interactions. Nature Methods. 8: 528-9. PMID 21716279 DOI: 10.1038/Nmeth.1637 |
0.387 |
|
| 2011 |
Panni S, Montecchi-Palazzi L, Kiemer L, Cabibbo A, Paoluzi S, Santonico E, Landgraf C, Volkmer-Engert R, Bachi A, Castagnoli L, Cesareni G. Combining peptide recognition specificity and context information for the prediction of the 14-3-3-mediated interactome in S. cerevisiae and H. sapiens. Proteomics. 11: 128-43. PMID 21182200 DOI: 10.1002/pmic.201000030 |
0.33 |
|
| 2010 |
Leitner F, Mardis SA, Krallinger M, Cesareni G, Hirschman LA, Valencia A. An Overview of BioCreative II.5. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 7: 385-99. PMID 20704011 DOI: 10.1109/Tcbb.2010.61 |
0.347 |
|
| 2010 |
Santonico E, Belleudi F, Panni S, Torrisi MR, Cesareni G, Castagnoli L. Multiple modification and protein interaction signals drive the Ring finger protein 11 (RNF11) E3 ligase to the endosomal compartment. Oncogene. 29: 5604-18. PMID 20676133 DOI: 10.1038/Onc.2010.294 |
0.366 |
|
| 2010 |
Carducci M, Licata L, Peluso D, Castagnoli L, Cesareni G. Enriching the viral-host interactomes with interactions mediated by SH3 domains. Amino Acids. 38: 1541-7. PMID 19882298 DOI: 10.1007/s00726-009-0375-z |
0.35 |
|
| 2009 |
Salwinski L, Licata L, Winter A, Thorneycroft D, Khadake J, Ceol A, Aryamontri AC, Oughtred R, Livstone M, Boucher L, Botstein D, Dolinski K, Berardini T, Huala E, Tyers M, ... ... Cesareni G, et al. Recurated protein interaction datasets. Nature Methods. 6: 860-1. PMID 19935838 DOI: 10.1038/Nmeth1209-860 |
0.393 |
|
| 2009 |
Tonikian R, Xin X, Toret CP, Gfeller D, Landgraf C, Panni S, Paoluzi S, Castagnoli L, Currell B, Seshagiri S, Yu H, Winsor B, Vidal M, Gerstein MB, Bader GD, ... Cesareni G, et al. Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins. Plos Biology. 7: e1000218. PMID 19841731 DOI: 10.1371/Journal.Pbio.1000218 |
0.304 |
|
| 2008 |
Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, et al. MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data. Genome Biology. 9: S5. PMID 18834496 DOI: 10.1186/Gb-2008-9-S2-S5 |
0.337 |
|
| 2008 |
Chatr-Aryamontri A, Zanzoni A, Ceol A, Cesareni G. Searching the protein interaction space through the MINT database. Methods in Molecular Biology (Clifton, N.J.). 484: 305-17. PMID 18592188 DOI: 10.1007/978-1-59745-398-1_20 |
0.655 |
|
| 2008 |
Cesareni G, Chatr-aryamontri A, Licata L, Ceol A. Searching the MINT database for protein interaction information. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 8.5. PMID 18551417 DOI: 10.1002/0471250953.bi0805s22 |
0.359 |
|
| 2008 |
Costa S, Cesareni G. Domains mediate protein-protein interactions and nucleate protein assemblies. Handbook of Experimental Pharmacology. 383-405. PMID 18491061 DOI: 10.1007/978-3-540-72843-6_16 |
0.423 |
|
| 2008 |
Chatr-Aryamontri A, Ceol A, Licata L, Cesareni G. Protein interactions: integration leads to belief. Trends in Biochemical Sciences. 33: 241-2; author reply . PMID 18472267 DOI: 10.1016/j.tibs.2008.04.002 |
0.346 |
|
| 2007 |
Kerrien S, Orchard S, Montecchi-Palazzi L, Aranda B, Quinn AF, Vinod N, Bader GD, Xenarios I, Wojcik J, Sherman D, Tyers M, Salama JJ, Moore S, Ceol A, Chatr-Aryamontri A, ... ... Cesareni G, et al. Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions. Bmc Biology. 5: 44. PMID 17925023 DOI: 10.1186/1741-7007-5-44 |
0.359 |
|
| 2007 |
Bernaschi M, Castiglione F, Ferranti A, Gavrila C, Tinti M, Cesareni G. ProtNet: a tool for stochastic simulations of protein interaction networks dynamics. Bmc Bioinformatics. 8: S4. PMID 17430571 DOI: 10.1186/1471-2105-8-S1-S4 |
0.329 |
|
| 2007 |
Kiemer L, Costa S, Ueffing M, Cesareni G. WI-PHI: a weighted yeast interactome enriched for direct physical interactions. Proteomics. 7: 932-43. PMID 17285561 DOI: 10.1002/pmic.200600448 |
0.36 |
|
| 2007 |
Chatr-aryamontri A, Ceol A, Palazzi LM, Nardelli G, Schneider MV, Castagnoli L, Cesareni G. MINT: the Molecular INTeraction database. Nucleic Acids Research. 35: D572-4. PMID 17135203 DOI: 10.1093/nar/gkl950 |
0.4 |
|
| 2007 |
Ceol A, Chatr-aryamontri A, Santonico E, Sacco R, Castagnoli L, Cesareni G. DOMINO: a database of domain-peptide interactions. Nucleic Acids Research. 35: D557-60. PMID 17135199 DOI: 10.1093/nar/gkl961 |
0.408 |
|
| 2006 |
Glykos NM, Papanikolau Y, Vlassi M, Kotsifaki D, Cesareni G, Kokkinidis M. Loopless Rop: structure and dynamics of an engineered homotetrameric variant of the repressor of primer protein. Biochemistry. 45: 10905-19. PMID 16953576 DOI: 10.1021/Bi060833N |
0.35 |
|
| 2005 |
Santonico E, Castagnoli L, Cesareni G. Methods to reveal domain networks. Drug Discovery Today. 10: 1111-7. PMID 16182196 DOI: 10.1016/S1359-6446(05)03513-0 |
0.401 |
|
| 2004 |
Castagnoli L, Costantini A, Dall'Armi C, Gonfloni S, Montecchi-Palazzi L, Panni S, Paoluzi S, Santonico E, Cesareni G. Selectivity and promiscuity in the interaction network mediated by protein recognition modules. Febs Letters. 567: 74-9. PMID 15165896 DOI: 10.1016/j.febslet.2004.03.116 |
0.342 |
|
| 2004 |
Hermjakob H, Montecchi-Palazzi L, Bader G, Wojcik J, Salwinski L, Ceol A, Moore S, Orchard S, Sarkans U, von Mering C, Roechert B, Poux S, Jung E, Mersch H, Kersey P, ... ... Cesareni G, et al. The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nature Biotechnology. 22: 177-83. PMID 14755292 DOI: 10.1038/Nbt926 |
0.424 |
|
| 2004 |
Hermjakob H, Montecchi-Palazzi L, Lewington C, Mudali S, Kerrien S, Orchard S, Vingron M, Roechert B, Roepstorff P, Valencia A, Margalit H, Armstrong J, Bairoch A, Cesareni G, Sherman D, et al. IntAct: an open source molecular interaction database. Nucleic Acids Research. 32: D452-5. PMID 14681455 DOI: 10.1093/Nar/Gkh052 |
0.38 |
|
| 2003 |
Cesareni G, Helmer-Citterich M. Searching the MINT database for protein interaction information. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 8.5. PMID 18428712 DOI: 10.1002/0471250953.bi0805s02 |
0.363 |
|
| 2003 |
Puntervoll P, Linding R, Gemünd C, Chabanis-Davidson S, Mattingsdal M, Cameron S, Martin DM, Ausiello G, Brannetti B, Costantini A, Ferrè F, Maselli V, Via A, Cesareni G, Diella F, et al. ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Research. 31: 3625-30. PMID 12824381 DOI: 10.1093/Nar/Gkg545 |
0.326 |
|
| 2003 |
Bader GD, Yan Tong AH, Cesareni G, Christopher W. H, Fields S, Boone C. Peptide Recognition Module Networks: Combining Phage Display with Two-Hybrid Analysis to Define Protein-Protein Interactions Handbook of Cell Signaling. 2: 311-315. DOI: 10.1016/B978-012124546-7/50536-2 |
0.334 |
|
| 2003 |
Dente L, Cesareni G. Use of random peptide phage-displayed libraries for studying protein phosphorylation and phosphotyrosine-dependent protein-protein interactions Biotecnologia Aplicada. 20: 134-138. |
0.339 |
|
| 2002 |
Aasland R, Abrams C, Ampe C, Ball LJ, Bedford MT, Cesareni G, Gimona M, Hurley JH, Jarchau T, Lehto VP, Lemmon MA, Linding R, Mayer BJ, Nagai M, Sudol M, et al. Normalization of nomenclature for peptide motifs as ligands of modular protein domains. Febs Letters. 513: 141-4. PMID 11911894 DOI: 10.1016/S0014-5793(01)03295-1 |
0.36 |
|
| 2002 |
Zanzoni A, Montecchi-Palazzi L, Quondam M, Ausiello G, Helmer-Citterich M, Cesareni G. MINT: a Molecular INTeraction database. Febs Letters. 513: 135-40. PMID 11911893 DOI: 10.1016/S0014-5793(01)03293-8 |
0.655 |
|
| 2002 |
Tong AH, Drees B, Nardelli G, Bader GD, Brannetti B, Castagnoli L, Evangelista M, Ferracuti S, Nelson B, Paoluzi S, Quondam M, Zucconi A, Hogue CW, Fields S, Boone C, Cesareni G, et al. A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules. Science (New York, N.Y.). 295: 321-4. PMID 11743162 DOI: 10.1126/Science.1064987 |
0.421 |
|
| 2001 |
Brannetti B, Zanzoni A, Montecchi-Palazzi L, Cesareni G, Helmer-Citterich M. iSPOT: a web tool for the analysis and recognition of protein domain specificity. Comparative and Functional Genomics. 2: 314-8. PMID 18629248 DOI: 10.1002/Cfg.104 |
0.64 |
|
| 2001 |
Cesareni G. ESF Workshop 'Proteomics: Focus on Protein Interactions'. Comparative and Functional Genomics. 2: 296-7. PMID 18629241 DOI: 10.1002/cfg.98 |
0.379 |
|
| 2001 |
Zucconi A, Dente L, Santonico E, Castagnoli L, Cesareni G. Selection of ligands by panning of domain libraries displayed on phage lambda reveals new potential partners of synaptojanin 1. Journal of Molecular Biology. 307: 1329-39. PMID 11292345 DOI: 10.1006/jmbi.2001.4572 |
0.31 |
|
| 2000 |
Zucconi A, Panni S, Paoluzi S, Castagnoli L, Dente L, Cesareni G. Domain repertoires as a tool to derive protein recognition rules. Febs Letters. 480: 49-54. PMID 10967328 DOI: 10.1016/S0014-5793(00)01777-4 |
0.339 |
|
| 2000 |
Brannetti B, Via A, Cestra G, Cesareni G, Helmer-Citterich M. SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family. Journal of Molecular Biology. 298: 313-28. PMID 10764600 DOI: 10.1006/jmbi.2000.3670 |
0.315 |
|
| 1998 |
Soucek L, Helmer-Citterich M, Sacco A, Jucker R, Cesareni G, Nasi S. Design and properties of a Myc derivative that efficiently homodimerizes. Oncogene. 17: 2463-72. PMID 9824157 DOI: 10.1038/Sj.Onc.1202199 |
0.314 |
|
| 1998 |
Yamabhai M, Hoffman NG, Hardison NL, McPherson PS, Castagnoli L, Cesareni G, Kay BK. Intersectin, a novel adaptor protein with two Eps15 homology and five Src homology 3 domains. The Journal of Biological Chemistry. 273: 31401-7. PMID 9813051 DOI: 10.1074/Jbc.273.47.31401 |
0.315 |
|
| 1997 |
Salcini AE, Confalonieri S, Doria M, Santolini E, Tassi E, Minenkova O, Cesareni G, Pelicci PG, Di Fiore PP. Binding specificity and in vivo targets of the EH domain, a novel protein-protein interaction module. Genes & Development. 11: 2239-49. PMID 9303539 |
0.373 |
|
| 1996 |
Crosio C, Cecconi F, Mariottini P, Cesareni G, Brenner S, Amaldi F. Fugu intron oversize reveals the presence of U15 snoRNA coding sequences in some introns of the ribosomal protein S3 gene. Genome Research. 6: 1227-31. PMID 8973918 DOI: 10.1101/Gr.6.12.1227 |
0.453 |
|
| 1996 |
Cecconi F, Crosio C, Mariottini P, Cesareni G, Giorgi M, Brenner S, Amaldi F. A functional role for some Fugu introns larger than the typical short ones: the example of the gene coding for ribosomal protein S7 and snoRNA U17. Nucleic Acids Research. 24: 3167-72. PMID 8774896 DOI: 10.1093/Nar/24.16.3167 |
0.446 |
|
| 1995 |
Marchetti A, Abril-Marti M, Illi B, Cesareni G, Nasi S. Analysis of the Myc and Max interaction specificity with lambda repressor-HLH domain fusions. Journal of Molecular Biology. 248: 541-50. PMID 7752223 DOI: 10.1006/jmbi.1995.0241 |
0.366 |
|
| 1982 |
Castagnoli L, Cesareni G, Brenner S. The plasmid as a tool for plasmid genetics. I. Fine structure of the beta-lactamase gene. Genetical Research. 40: 217-31. PMID 6761236 DOI: 10.1017/S001667230001911X |
0.393 |
|
| 1982 |
Cesareni G, Castagnoli L, Brenner S. The plasmid as a tool for plasmid genetics. II. Isolation of point mutations that affect replication of a ColE1-related plasmid. Genetical Research. 40: 233-47. PMID 6298062 DOI: 10.1017/S0016672300019121 |
0.413 |
|
| 1982 |
Brenner S, Cesareni G, Karn J. Phasmids: hybrids between ColE1 plasmids and E. coli bacteriophage lambda. Gene. 17: 27-44. PMID 6281134 DOI: 10.1016/0378-1119(82)90098-1 |
0.429 |
|
| 1980 |
Karn J, Brenner S, Barnett L, Cesareni G. Novel bacteriophage lambda cloning vector. Proceedings of the National Academy of Sciences of the United States of America. 77: 5172-6. PMID 6254062 DOI: 10.1073/Pnas.77.9.5172 |
0.425 |
|
| Show low-probability matches. |