Peter Hans von Hippel - Publications

Affiliations: 
University of Oregon, Eugene, OR, United States 
Area:
DNA transcription and replication
Website:
http://chemistry.uoregon.edu/fac.html?vonHippel

162 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Maurer J, Albrecht CS, Herbert P, Heussman D, Chang A, von Hippel PH, Marcus AH. Studies of DNA 'Breathing' by Polarization-Sweep Single-Molecule Fluorescence Microscopy of Exciton-Coupled (iCy3) Dimer-Labeled DNA Fork Constructs. The Journal of Physical Chemistry. B. PMID 38060691 DOI: 10.1021/acs.jpcb.3c06463  0.811
2023 Heussman D, Enkhbaatar L, Sorour MI, Kistler KA, von Hippel PH, Matsika S, Marcus AH. Using transition density models to interpret experimental optical spectra of exciton-coupled cyanine (iCy3)2 dimer probes of local DNA conformations at or near functional protein binding sites. Nucleic Acids Research. PMID 38050987 DOI: 10.1093/nar/gkad1163  0.655
2022 Marcus AH, Heussman D, Maurer J, Albrecht CS, Herbert P, von Hippel PH. Studies of Local DNA Backbone Conformation and Conformational Disorder Using Site-Specific Exciton-Coupled Dimer Probe Spectroscopy. Annual Review of Physical Chemistry. PMID 36696590 DOI: 10.1146/annurev-physchem-090419-041204  0.816
2022 Heussman D, Kittell J, von Hippel PH, Marcus AH. Temperature-dependent local conformations and conformational distributions of cyanine dimer labeled single-stranded-double-stranded DNA junctions by 2D fluorescence spectroscopy. The Journal of Chemical Physics. 156: 045101. PMID 35105081 DOI: 10.1063/5.0076261  0.681
2021 Israels B, Albrecht CS, Dang A, Barney M, von Hippel PH, Marcus AH. Submillisecond Conformational Transitions of Short Single-Stranded DNA Lattices by Photon Correlation Single-Molecule Förster Resonance Energy Transfer. The Journal of Physical Chemistry. B. PMID 34379430 DOI: 10.1021/acs.jpcb.1c04119  0.694
2021 Beyerle ER, Dinpajooh M, Ji H, von Hippel PH, Marcus AH, Guenza MG. Dinucleotides as simple models of the base stacking-unstacking component of DNA 'breathing' mechanisms. Nucleic Acids Research. PMID 33503257 DOI: 10.1093/nar/gkab015  0.636
2020 Camel BR, Jose D, Meze K, Dang A, von Hippel PH. Mapping DNA conformations and interactions within the binding cleft of bacteriophage T4 single-stranded DNA binding protein (gp32) at single nucleotide resolution. Nucleic Acids Research. PMID 33367802 DOI: 10.1093/nar/gkaa1230  0.459
2019 von Hippel PH, Marcus AH. The Many Roles of Binding Cooperativity in the Control of DNA Replication. Biophysical Journal. PMID 31708164 DOI: 10.1016/j.bpj.2019.10.029  0.649
2019 Ji H, Johnson NP, von Hippel PH, Marcus AH. Local DNA Base Conformations and Ligand Intercalation in DNA Constructs Containing Optical Probes. Biophysical Journal. PMID 31474304 DOI: 10.1016/j.bpj.2019.08.006  0.664
2019 Heussman D, Kittell J, Kringle L, Tamimi A, von Hippel PH, Marcus AH. Measuring local conformations and conformational disorder of (Cy3) dimer labeled DNA fork junctions using absorbance, circular dichroism and two-dimensional fluorescence spectroscopy. Faraday Discussions. PMID 31038134 DOI: 10.1039/c8fd00245b  0.648
2017 Phelps C, Israels B, Jose D, Marsh MC, von Hippel PH, Marcus AH. Using microsecond single-molecule FRET to determine the assembly pathways of T4 ssDNA binding protein onto model DNA replication forks. Proceedings of the National Academy of Sciences of the United States of America. PMID 28416680 DOI: 10.1073/Pnas.1619819114  0.695
2016 Phelps C, Israels B, Marsh MC, von Hippel PH, Marcus AH. Using Multiorder Time-Correlation Functions (TCFs) To Elucidate Biomolecular Reaction Pathways from Microsecond Single-Molecule Fluorescence Experiments. The Journal of Physical Chemistry. B. PMID 27992233 DOI: 10.1021/Acs.Jpcb.6B08449  0.633
2016 Lee W, Gillies JP, Jose D, Israels BA, von Hippel PH, Marcus AH. Single-molecule FRET studies of the cooperative and non-cooperative binding kinetics of the bacteriophage T4 single-stranded DNA binding protein (gp32) to ssDNA lattices at replication fork junctions. Nucleic Acids Research. PMID 27694621 DOI: 10.1093/nar/gkw863  0.678
2015 Johnson NP, Ji H, Steinberg TH, von Hippel PH, Marcus AH. Sequence-Dependent Conformational Heterogeneity and Proton Transfer Reactivity of the Fluorescent Guanine Analog 6-Methyl Isoxanthopterin (6-MI) in DNA. The Journal of Physical Chemistry. B. PMID 26368400 DOI: 10.1021/acs.jpcb.5b06361  0.636
2015 Jose D, Weitzel SE, Baase WA, von Hippel PH. Mapping the interactions of the single-stranded DNA binding protein of bacteriophage T4 (gp32) with DNA lattices at single nucleotide resolution: gp32 monomer binding. Nucleic Acids Research. 43: 9276-90. PMID 26275775 DOI: 10.1093/nar/gkv817  0.422
2015 Jose D, Weitzel SE, Baase WA, Michael MM, von Hippel PH. Mapping the interactions of the single-stranded DNA binding protein of bacteriophage T4 (gp32) with DNA lattices at single nucleotide resolution: polynucleotide binding and cooperativity. Nucleic Acids Research. 43: 9291-305. PMID 26275774 DOI: 10.1093/nar/gkv818  0.359
2014 Lee W, von Hippel PH, Marcus AH. Internally labeled Cy3/Cy5 DNA constructs show greatly enhanced photo-stability in single-molecule FRET experiments. Nucleic Acids Research. 42: 5967-77. PMID 24627223 DOI: 10.1093/nar/gku199  0.648
2013 Widom JR, Johnson NP, von Hippel PH, Marcus AH. Solution conformation of 2-aminopurine (2-AP) dinucleotide determined by ultraviolet 2D fluorescence spectroscopy (UV-2D FS). New Journal of Physics. 15. PMID 24223491 DOI: 10.1088/1367-2630/15/2/025028  0.759
2013 Phelps C, Lee W, Jose D, von Hippel PH, Marcus AH. Single-molecule FRET and linear dichroism studies of DNA breathing and helicase binding at replication fork junctions. Proceedings of the National Academy of Sciences of the United States of America. 110: 17320-5. PMID 24062430 DOI: 10.1073/Pnas.1314862110  0.674
2013 von Hippel PH, Johnson NP, Marcus AH. Fifty years of DNA "Breathing": Reflections on old and new approaches. Biopolymers. 99: 923-54. PMID 23840028 DOI: 10.1002/bip.22347  0.651
2013 Lee W, Jose D, Phelps C, Marcus AH, von Hippel PH. A single-molecule view of the assembly pathway, subunit stoichiometry, and unwinding activity of the bacteriophage T4 primosome (helicase-primase) complex. Biochemistry. 52: 3157-70. PMID 23578280 DOI: 10.1021/Bi400231S  0.665
2013 Widom JR, Rappoport D, Perdomo-Ortiz A, Thomsen H, Johnson NP, von Hippel PH, Aspuru-Guzik A, Marcus AH. Electronic transition moments of 6-methyl isoxanthopterin--a fluorescent analogue of the nucleic acid base guanine. Nucleic Acids Research. 41: 995-1004. PMID 23185042 DOI: 10.1093/Nar/Gks1148  0.765
2012 Jose D, Weitzel SE, von Hippel PH. Breathing fluctuations in position-specific DNA base pairs are involved in regulating helicase movement into the replication fork. Proceedings of the National Academy of Sciences of the United States of America. 109: 14428-33. PMID 22908246 DOI: 10.1073/pnas.1212929109  0.462
2012 Jose D, Weitzel SE, Jing D, von Hippel PH. Assembly and subunit stoichiometry of the functional helicase-primase (primosome) complex of bacteriophage T4. Proceedings of the National Academy of Sciences of the United States of America. 109: 13596-601. PMID 22869700 DOI: 10.1073/pnas.1210040109  0.37
2012 Datta K, Johnson NP, Villani G, Marcus AH, von Hippel PH. Characterization of the 6-methyl isoxanthopterin (6-MI) base analog dimer, a spectroscopic probe for monitoring guanine base conformations at specific sites in nucleic acids. Nucleic Acids Research. 40: 1191-202. PMID 22009678 DOI: 10.1093/Nar/Gkr858  0.656
2011 Greive SJ, Dyer BA, Weitzel SE, Goodarzi JP, Main LJ, von Hippel PH. Fitting experimental transcription data with a comprehensive template-dependent modular kinetic model. Biophysical Journal. 101: 1166-74. PMID 21889454 DOI: 10.1016/J.Bpj.2011.07.043  0.8
2011 Greive SJ, Goodarzi JP, Weitzel SE, von Hippel PH. Development of a "modular" scheme to describe the kinetics of transcript elongation by RNA polymerase. Biophysical Journal. 101: 1155-65. PMID 21889453 DOI: 10.1016/J.Bpj.2011.07.042  0.803
2010 Datta K, Johnson NP, von Hippel PH. DNA conformational changes at the primer-template junction regulate the fidelity of replication by DNA polymerase. Proceedings of the National Academy of Sciences of the United States of America. 107: 17980-5. PMID 20921373 DOI: 10.1073/Pnas.1012277107  0.406
2009 Warf MB, Diegel JV, von Hippel PH, Berglund JA. The protein factors MBNL1 and U2AF65 bind alternative RNA structures to regulate splicing. Proceedings of the National Academy of Sciences of the United States of America. 106: 9203-8. PMID 19470458 DOI: 10.1073/pnas.0900342106  0.381
2009 Datta K, Johnson NP, LiCata VJ, von Hippel PH. Local conformations and competitive binding affinities of single- and double-stranded primer-template DNA at the polymerization and editing active sites of DNA polymerases. The Journal of Biological Chemistry. 284: 17180-93. PMID 19411253 DOI: 10.1074/Jbc.M109.007641  0.405
2009 Jose D, Datta K, Johnson NP, von Hippel PH. Spectroscopic studies of position-specific DNA "breathing" fluctuations at replication forks and primer-template junctions. Proceedings of the National Academy of Sciences of the United States of America. 106: 4231-6. PMID 19246398 DOI: 10.1016/J.Bpj.2008.12.1732  0.393
2009 Baase WA, Jose D, Ponedel BC, von Hippel PH, Johnson NP. DNA models of trinucleotide frameshift deletions: the formation of loops and bulges at the primer-template junction. Nucleic Acids Research. 37: 1682-9. PMID 19155277 DOI: 10.1093/nar/gkn1042  0.378
2008 Conant CR, Goodarzi JP, Weitzel SE, von Hippel PH. The antitermination activity of bacteriophage lambda N protein is controlled by the kinetics of an RNA-looping-facilitated interaction with the transcription complex. Journal of Molecular Biology. 384: 87-108. PMID 18922547 DOI: 10.1016/J.Jmb.2008.05.014  0.785
2008 Pietroni P, von Hippel PH. Multiple ATP binding is required to stabilize the "activated" (clamp open) clamp loader of the T4 DNA replication complex. The Journal of Biological Chemistry. 283: 28338-53. PMID 18676368 DOI: 10.1074/Jbc.M804371200  0.819
2008 Greive SJ, Weitzel SE, Goodarzi JP, Main LJ, Pasman Z, von Hippel PH. Monitoring RNA transcription in real time by using surface plasmon resonance. Proceedings of the National Academy of Sciences of the United States of America. 105: 3315-20. PMID 18299563 DOI: 10.1073/Pnas.0712074105  0.818
2008 Datta K, von Hippel PH. Direct spectroscopic study of reconstituted transcription complexes reveals that intrinsic termination is driven primarily by thermodynamic destabilization of the nucleic acid framework. The Journal of Biological Chemistry. 283: 3537-49. PMID 18070878 DOI: 10.1074/Jbc.M707998200  0.448
2007 von Hippel PH. From "simple" DNA-protein interactions to the macromolecular machines of gene expression. Annual Review of Biophysics and Biomolecular Structure. 36: 79-105. PMID 17477836 DOI: 10.1146/annurev.biophys.34.040204.144521  0.322
2006 Datta K, Johnson NP, von Hippel PH. Mapping the conformation of the nucleic acid framework of the T7 RNA polymerase elongation complex in solution using low-energy CD and fluorescence spectroscopy. Journal of Molecular Biology. 360: 800-13. PMID 16784751 DOI: 10.1016/J.Jmb.2006.05.053  0.418
2006 von Hippel PH. Transcriptional pausing caught in the act. Cell. 125: 1027-8. PMID 16777591 DOI: 10.1016/j.cell.2006.06.006  0.331
2005 Greive SJ, Lins AF, von Hippel PH. Assembly of an RNA-protein complex. Binding of NusB and NusE (S10) proteins to boxA RNA nucleates the formation of the antitermination complex involved in controlling rRNA transcription in Escherichia coli. The Journal of Biological Chemistry. 280: 36397-408. PMID 16109710 DOI: 10.1074/jbc.M507146200  0.396
2005 Johnson NP, Baase WA, von Hippel PH. Low energy CD of RNA hairpin unveils a loop conformation required for lambdaN antitermination activity. The Journal of Biological Chemistry. 280: 32177-83. PMID 16033760 DOI: 10.1074/jbc.M504619200  0.355
2005 Conant CR, Van Gilst MR, Weitzel SE, Rees WA, von Hippel PH. A quantitative description of the binding states and in vitro function of antitermination protein N of bacteriophage lambda. Journal of Molecular Biology. 348: 1039-57. PMID 15854643 DOI: 10.1016/J.Jmb.2005.03.042  0.824
2005 Delagoutte E, von Hippel PH. Mechanistic studies of the T4 DNA (gp41) replication helicase: functional interactions of the C-terminal Tails of the helicase subunits with the T4 (gp59) helicase loader protein. Journal of Molecular Biology. 347: 257-75. PMID 15740739 DOI: 10.1016/j.jmb.2005.01.036  0.323
2004 Johnson NP, Baase WA, Von Hippel PH. Low-energy circular dichroism of 2-aminopurine dinucleotide as a probe of local conformation of DNA and RNA. Proceedings of the National Academy of Sciences of the United States of America. 101: 3426-31. PMID 14993592 DOI: 10.1073/pnas.0400591101  0.325
2003 von Hippel PH, Delagoutte E. Macromolecular complexes that unwind nucleic acids. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 25: 1168-77. PMID 14635252 DOI: 10.1002/bies.10369  0.368
2003 Delagoutte E, Von Hippel PH. Function and assembly of the bacteriophage T4 DNA replication complex: interactions of the T4 polymerase with various model DNA constructs. The Journal of Biological Chemistry. 278: 25435-47. PMID 12700227 DOI: 10.1074/jbc.M303370200  0.476
2003 Delagoutte E, von Hippel PH. Helicase mechanisms and the coupling of helicases within macromolecular machines. Part II: Integration of helicases into cellular processes. Quarterly Reviews of Biophysics. 36: 1-69. PMID 12643042 DOI: 10.1017/S0033583502003864  0.342
2002 von Hippel PH, Pasman Z. Reaction pathways in transcript elongation. Biophysical Chemistry. 101: 401-23. PMID 12488017 DOI: 10.1016/S0301-4622(02)00160-6  0.333
2001 Pietroni P, Young MC, Latham GJ, von Hippel PH. Dissection of the ATP-driven reaction cycle of the bacteriophage T4 DNA replication processivity clamp loading system. Journal of Molecular Biology. 309: 869-91. PMID 11399065 DOI: 10.1006/Jmbi.2001.4687  0.815
2001 Delagoutte E, von Hippel PH. Molecular mechanisms of the functional coupling of the helicase (gp41) and polymerase (gp43) of bacteriophage T4 within the DNA replication fork. Biochemistry. 40: 4459-77. PMID 11284703 DOI: 10.1021/bi001306l  0.368
2000 Pasman Z, von Hippel PH. Regulation of rho-dependent transcription termination by NusG is specific to the Escherichia coli elongation complex. Biochemistry. 39: 5573-85. PMID 10820031 DOI: 10.1021/bi992658z  0.35
1999 Latham GJ, Dong F, Pietroni P, Dozono JM, Bacheller DJ, von Hippel PH. Opening of a monomer-monomer interface of the trimeric bacteriophage T4-coded GP45 sliding clamp is required for clamp loading onto DNA. Proceedings of the National Academy of Sciences of the United States of America. 96: 12448-53. PMID 10535942 DOI: 10.1073/Pnas.96.22.12448  0.817
1999 Jing DH, Dong F, Latham GJ, von Hippel PH. Interactions of bacteriophage T4-coded primase (gp61) with the T4 replication helicase (gp41) and DNA in primosome formation. The Journal of Biological Chemistry. 274: 27287-98. PMID 10480949 DOI: 10.1074/jbc.274.38.27287  0.323
1999 Daube SS, von Hippel PH. Interactions of Escherichia coli sigma(70) within the transcription elongation complex. Proceedings of the National Academy of Sciences of the United States of America. 96: 8390-5. PMID 10411885 DOI: 10.1073/pnas.96.15.8390  0.432
1999 Wilson KS, Conant CR, von Hippel PH. Determinants of the stability of transcription elongation complexes: interactions of the nascent RNA with the DNA template and the RNA polymerase. Journal of Molecular Biology. 289: 1179-94. PMID 10373360 DOI: 10.1006/Jmbi.1999.2814  0.815
1998 Zhu AQ, von Hippel PH. Rho-dependent termination within the trp t' terminator. II. Effects of kinetic competition and rho processivity. Biochemistry. 37: 11215-22. PMID 9698367 DOI: 10.1021/bi972912s  0.354
1998 Zhu AQ, von Hippel PH. Rho-dependent termination within the trp t' terminator. I. Effects of rho loading and template sequence. Biochemistry. 37: 11202-14. PMID 9698366 DOI: 10.1021/bi9729110  0.329
1998 Walstrom KM, Dozono JM, von Hippel PH. Effects of reaction conditions on RNA secondary structure and on the helicase activity of Escherichia coli transcription termination factor Rho. Journal of Molecular Biology. 279: 713-26. PMID 9642055 DOI: 10.1006/jmbi.1998.1814  0.332
1998 Lott WB, Pontius BW, von Hippel PH. A two-metal ion mechanism operates in the hammerhead ribozyme-mediated cleavage of an RNA substrate. Proceedings of the National Academy of Sciences of the United States of America. 95: 542-7. PMID 9435228 DOI: 10.1073/Pnas.95.2.542  0.659
1998 Latham GJ, Von Hippel PH. Interactions of the t4 dna replication helicase with primase in the formation of the primosome. hjinfc Faseb Journal. 12: A1352.  0.302
1997 Van Gilst MR, von Hippel PH. Assembly of the N-dependent antitermination complex of phage lambda: NusA and RNA bind independently to different unfolded domains of the N protein. Journal of Molecular Biology. 274: 160-73. PMID 9398524 DOI: 10.1006/jmbi.1997.1389  0.379
1997 Latham GJ, Bacheller DJ, Pietroni P, von Hippel PH. Structural analyses of gp45 sliding clamp interactions during assembly of the bacteriophage T4 DNA polymerase holoenzyme. III. The Gp43 DNA polymerase binds to the same face of the sliding clamp as the clamp loader. The Journal of Biological Chemistry. 272: 31685-92. PMID 9395510 DOI: 10.1074/Jbc.272.50.31685  0.815
1997 Latham GJ, Bacheller DJ, Pietroni P, von Hippel PH. Structural analyses of gp45 sliding clamp interactions during assembly of the bacteriophage T4 DNA polymerase holoenzyme. II. The Gp44/62 clamp loader interacts with a single defined face of the sliding clamp ring. The Journal of Biological Chemistry. 272: 31677-84. PMID 9395509 DOI: 10.1074/Jbc.272.50.31677  0.8
1997 Pietroni P, Young MC, Latham GJ, von Hippel PH. Structural analyses of gp45 sliding clamp interactions during assembly of the bacteriophage T4 DNA polymerase holoenzyme. I. Conformational changes within the gp44/62-gp45-ATP complex during clamp loading. The Journal of Biological Chemistry. 272: 31666-76. PMID 9395508 DOI: 10.1074/Jbc.272.50.31666  0.822
1997 Rees WA, Weitzel SE, Das A, von Hippel PH. Regulation of the elongation-termination decision at intrinsic terminators by antitermination protein N of phage lambda. Journal of Molecular Biology. 273: 797-813. PMID 9367773 DOI: 10.1006/jmbi.1997.1327  0.323
1997 Rippe K, Guthold M, von Hippel PH, Bustamante C. Transcriptional activation via DNA-looping: visualization of intermediates in the activation pathway of E. coli RNA polymerase x sigma 54 holoenzyme by scanning force microscopy. Journal of Molecular Biology. 270: 125-38. PMID 9236116 DOI: 10.1006/Jmbi.1997.1079  0.637
1997 Walstrom KM, Dozono JM, von Hippel PH. Kinetics of the RNA-DNA helicase activity of Escherichia coli transcription termination factor rho. 2. Processivity, ATP consumption, and RNA binding. Biochemistry. 36: 7993-8004. PMID 9201946 DOI: 10.1021/bi963180r  0.423
1997 Walstrom KM, Dozono JM, Robic S, von Hippel PH. Kinetics of the RNA-DNA helicase activity of Escherichia coli transcription termination factor rho. 1. Characterization and analysis of the reaction. Biochemistry. 36: 7980-92. PMID 9201945 DOI: 10.1021/bi963179s  0.4
1997 Pontius BW, Lott WB, von Hippel PH. Observations on catalysis by hammerhead ribozymes are consistent with a two-divalent-metal-ion mechanism. Proceedings of the National Academy of Sciences of the United States of America. 94: 2290-4. PMID 9122187 DOI: 10.1073/Pnas.94.6.2290  0.605
1997 Van Gilst MR, Rees WA, Das A, von Hippel PH. Complexes of N antitermination protein of phage lambda with specific and nonspecific RNA target sites on the nascent transcript. Biochemistry. 36: 1514-24. PMID 9063900 DOI: 10.1021/bi961920q  0.4
1996 Young MC, Weitzel SE, von Hippel PH. The kinetic mechanism of formation of the bacteriophage T4 DNA polymerase sliding clamp. Journal of Molecular Biology. 264: 440-52. PMID 8969296 DOI: 10.1006/jmbi.1996.0652  0.377
1996 Latham GJ, Pietroni P, Dong F, Young MC, von Hippel PH. Fluorescence monitoring of T4 polymerase holoenzyme accessory protein interactions during loading of the sliding clamp onto the template-primer junction. Journal of Molecular Biology. 264: 426-39. PMID 8969295 DOI: 10.1006/Jmbi.1996.0651  0.808
1996 Dong F, Weitzel SE, von Hippel PH. A coupled complex of T4 DNA replication helicase (gp41) and polymerase (gp43) can perform rapid and processive DNA strand-displacement synthesis. Proceedings of the National Academy of Sciences of the United States of America. 93: 14456-61. PMID 8962073 DOI: 10.1073/pnas.93.25.14456  0.392
1996 Das A, Pal M, Mena JG, Whalen W, Wolska K, Crossley R, Rees W, von Hippel PH, Costantino N, Court D, Mazzulla M, Altieri AS, Byrd RA, Chattopadhyay S, DeVito J, et al. Components of multiprotein-RNA complex that controls transcription elongation in Escherichia coli phage lambda. Methods in Enzymology. 274: 374-402. PMID 8902820 DOI: 10.1016/S0076-6879(96)74032-6  0.363
1996 Dong F, von Hippel PH. The ATP-activated hexameric helicase of bacteriophage T4 (gp41) forms a stable primosome with a single subunit of T4-coded primase (gp61). The Journal of Biological Chemistry. 271: 19625-31. PMID 8702659 DOI: 10.1074/jbc.271.32.19625  0.402
1996 von Hippel PH, Rees WA, Rippe K, Wilson KS. Specificity mechanisms in the control of transcription. Biophysical Chemistry. 59: 231-46. PMID 8672714 DOI: 10.1016/0301-4622(96)00006-3  0.775
1996 Rees WA, Weitzel SE, Yager TD, Das A, von Hippel PH. Bacteriophage lambda N protein alone can induce transcription antitermination in vitro. Proceedings of the National Academy of Sciences of the United States of America. 93: 342-6. PMID 8552635 DOI: 10.1073/pnas.93.1.342  0.315
1995 Van Gilst M, Rees WA, von Hippel PH. Structural and thermodynamic characteristics of the binding of the lambda N protein to a RNA hairpin. Nucleic Acids Symposium Series. 145-7. PMID 8643353  0.37
1995 Walstrom KM, von Hippel PH. Production of RNA strands containing nucleotide analogs in only one section. Nucleic Acids Symposium Series. 126-8. PMID 8643346  0.419
1995 von Hippel PH, Rees WA, Wilson KS. RNA interactions in the regulation of transcription. Nucleic Acids Symposium Series. 1-4. PMID 8643338  0.391
1995 Rippe K, von Hippel PH, Langowski J. Action at a distance: DNA-looping and initiation of transcription. Trends in Biochemical Sciences. 20: 500-6. PMID 8571451 DOI: 10.1016/S0968-0004(00)89117-3  0.648
1995 von Hippel PH. A ring to bind eukaryotic DNA polymerase. Structure (London, England : 1993). 3: 123-4. PMID 7743127  0.377
1995 Dong F, Gogol EP, von Hippel PH. The phage T4-coded DNA replication helicase (gp41) forms a hexamer upon activation by nucleoside triphosphate. The Journal of Biological Chemistry. 270: 7462-73. PMID 7706292  0.741
1995 Wilson KS, von Hippel PH. Transcription termination at intrinsic terminators: the role of the RNA hairpin. Proceedings of the National Academy of Sciences of the United States of America. 92: 8793-7. PMID 7568019 DOI: 10.1073/Pnas.92.19.8793  0.703
1994 Johnson NP, Lindstrom J, Baase WA, von Hippel PH. Double-stranded DNA templates can induce alpha-helical conformation in peptides containing lysine and alanine: functional implications for leucine zipper and helix-loop-helix transcription factors. Proceedings of the National Academy of Sciences of the United States of America. 91: 4840-4. PMID 8197144 DOI: 10.1073/pnas.91.11.4840  0.336
1994 Young MC, Schultz DE, Ring D, von Hippel PH. Kinetic parameters of the translocation of bacteriophage T4 gene 41 protein helicase on single-stranded DNA. Journal of Molecular Biology. 235: 1447-58. PMID 8107085 DOI: 10.1006/jmbi.1994.1100  0.426
1994 Wilson KS, von Hippel PH. Stability of Escherichia coli transcription complexes near an intrinsic terminator. Journal of Molecular Biology. 244: 36-51. PMID 7966320 DOI: 10.1006/Jmbi.1994.1702  0.692
1994 von Hippel PH. Template copying. Passing lanes for polymerases? Current Biology : Cb. 4: 333-6. PMID 7922342 DOI: 10.1016/S0960-9822(00)00072-5  0.372
1994 Daube SS, Hart CR, von Hippel PH. Coupling of RNA displacement and intrinsic termination in transcription from synthetic RNA.DNA bubble duplex constructs. Proceedings of the National Academy of Sciences of the United States of America. 91: 9539-43. PMID 7524080  0.398
1994 Daube SS, von Hippel PH. RNA displacement pathways during transcription from synthetic RNA-DNA bubble duplexes. Biochemistry. 33: 340-7. PMID 7506932  0.397
1993 Reddy MK, Weitzel SE, von Hippel PH. Assembly of a functional replication complex without ATP hydrolysis: a direct interaction of bacteriophage T4 gp45 with T4 DNA polymerase. Proceedings of the National Academy of Sciences of the United States of America. 90: 3211-5. PMID 8475061  0.331
1993 Rees WA, Yager TD, Korte J, von Hippel PH. Betaine can eliminate the base pair composition dependence of DNA melting. Biochemistry. 32: 137-44. PMID 8418834  0.328
1993 Hockensmith JW, Kubasek WL, Evertsz EM, Mesner LD, von Hippel PH. Laser cross-linking of proteins to nucleic acids. II. Interactions of the bacteriophage T4 DNA replication polymerase accessory proteins complex with DNA. The Journal of Biological Chemistry. 268: 15721-30. PMID 8340396  0.379
1993 Wang Y, von Hippel PH. Escherichia coli transcription termination factor rho. II. Binding of oligonucleotide cofactors. The Journal of Biological Chemistry. 268: 13947-55. PMID 8314761  0.405
1993 Wang Y, von Hippel PH. Escherichia coli transcription termination factor rho. I. ATPase activation by oligonucleotide cofactors. The Journal of Biological Chemistry. 268: 13940-6. PMID 8314760  0.386
1993 Erie DA, Hajiseyedjavadi O, Young MC, von Hippel PH. Multiple RNA polymerase conformations and GreA: control of the fidelity of transcription. Science (New York, N.Y.). 262: 867-73. PMID 8235608 DOI: 10.1126/Science.8235608  0.677
1993 Geiselmann J, Wang Y, Seifried SE, von Hippel PH. A physical model for the translocation and helicase activities of Escherichia coli transcription termination protein Rho. Proceedings of the National Academy of Sciences of the United States of America. 90: 7754-8. PMID 7689228  0.452
1992 Reddy MK, Weitzel SE, von Hippel PH. Processive proofreading is intrinsic to T4 DNA polymerase. The Journal of Biological Chemistry. 267: 14157-66. PMID 1629215  0.377
1992 Von Hippel PH, Yager TD. The elongation-termination decision in transcription Science. 255: 809-812. PMID 1536005  0.304
1992 Gogol EP, Young MC, Kubasek WL, Jarvis TC, von Hippel PH. Cryoelectron microscopic visualization of functional subassemblies of the bacteriophage T4 DNA replication complex Journal of Molecular Biology. 224: 395-412. PMID 1532838 DOI: 10.1016/0022-2836(92)91003-8  0.721
1992 Seifried SE, Easton JB, von Hippel PH. ATPase activity of transcription-termination factor rho: functional dimer model. Proceedings of the National Academy of Sciences of the United States of America. 89: 10454-8. PMID 1438233  0.372
1992 Erie DA, Yager TD, von Hippel PH. The single-nucleotide addition cycle in transcription: a biophysical and biochemical perspective. Annual Review of Biophysics and Biomolecular Structure. 21: 379-415. PMID 1381976 DOI: 10.1146/Annurev.Bb.21.060192.002115  0.612
1992 Geiselmann J, Von Hippel PH. Functional interactions of ligand cofactors with Escherichia coli transcription termination factor rho. I. Binding of ATP Protein Science. 1: 850-860. PMID 1304371  0.372
1992 Geiselmann J, Yager TD, Von Hippel PH. Functional interactions of ligand cofactors with Escherichia coli transcription termination factor rho. II. Binding of RNA Protein Science. 1: 861-873. PMID 1284680  0.403
1992 Daube SS, von Hippel PH. Functional transcription elongation complexes from synthetic RNA-DNA bubble duplexes. Science (New York, N.Y.). 258: 1320-4. PMID 1280856  0.424
1991 Jarvis TC, Newport JW, von Hippel PH. Stimulation of the processivity of the DNA polymerase of bacteriophage T4 by the polymerase accessory proteins. The role of ATP hydrolysis. The Journal of Biological Chemistry. 266: 1830-40. PMID 1988449  0.685
1991 Gill SC, Weitzel SE, von Hippel PH. Escherichia coli σ70 and NusA proteins. I. Binding interactions with core RNA polymerase in solution and within the transcription complex Journal of Molecular Biology. 220: 307-324. PMID 1856861 DOI: 10.1016/0022-2836(91)90015-X  0.395
1991 Seifried SE, Bjornson KP, von Hippel PH. Structure and assembly of the Escherichia coli transcription termination factor rho and its interactions with RNA II. Physical chemical studies Journal of Molecular Biology. 221: 1139-1151. PMID 1719216 DOI: 10.1016/0022-2836(91)90924-U  0.349
1991 Gogol EP, Seifried SE, von Hippel PH. Structure and assembly of the Escherichia coli transcription termination factor rho and its interactions with RNA I. Cryoelectron microscopic studies Journal of Molecular Biology. 221: 1127-1138. PMID 1719215 DOI: 10.1016/0022-2836(91)90923-T  0.706
1990 Jarvis TC, Ring DM, Daube SS, Von Hippel PH. "Macromolecular crowding": Thermodynamic consequences for protein-protein interactions within the T4 DNA replication complex Journal of Biological Chemistry. 265: 15160-15167. PMID 2168402  0.363
1990 C. Gill S, D. Yager T, von Hippel PH. Thermodynamic analysis of the transcription cycle in E. coli Biophysical Chemistry. 37: 239-250. PMID 1704801 DOI: 10.1016/0301-4622(90)88023-L  0.325
1989 Berg OG, von Hippel PH. Selection of DNA binding sites by regulatory proteins. Trends in Biochemical Sciences. 13: 207-11. PMID 3079537 DOI: 10.1016/0968-0004(88)90085-0  0.369
1989 Jarvis TC, Paul LS, Von Hippel PH. Structural and enzymatic studies of the T4 DNA replication system. I. Physical characterization of the polymerase accessory protein complex Journal of Biological Chemistry. 264: 12709-12716. PMID 2663867  0.331
1989 Jarvis TC, Paul LS, Hockensmith JW, Von Hippel PH. Structural and enzymatic studies of the T4 DNA replication system. II. ATPase properties of the polymerase accessory protein complex Journal of Biological Chemistry. 264: 12717-12729. PMID 2526128  0.469
1988 Berg OG, von Hippel PH. Selection of DNA binding sites by regulatory proteins. II. The binding specificity of cyclic AMP receptor protein to recognition sites Journal of Molecular Biology. 200: 709-723. PMID 3045325 DOI: 10.1016/0022-2836(88)90482-2  0.327
1988 Seifried SE, Wang Y, Von Hippel PH. Fluorescent modification of the cysteine 202 residue of Escherichia coli transcription termination factor Rho Journal of Biological Chemistry. 263: 13511-13514. PMID 2458348  0.356
1988 Bear DG, Hicks PS, Escudero KW, Andrews CL, McSwiggen JA, von Hippel PH. Interactions of Escherichia coli transcription termination factor rho with RNA. II. Electron microscopy and nuclease protection experiments. Journal of Molecular Biology. 199: 623-35. PMID 2451029 DOI: 10.1016/0022-2836(88)90306-3  0.827
1988 McSwiggen JA, Bear DG, von Hippel PH. Interactions of Escherichia coli transcription termination factor rho with RNA. I. Binding stoichiometries and free energies Journal of Molecular Biology. 199: 609-622. PMID 2451028 DOI: 10.1016/0022-2836(88)90305-1  0.417
1987 Berg OG, von Hippel PH. Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters Journal of Molecular Biology. 193: 723-743. PMID 3612791 DOI: 10.1016/0022-2836(87)90354-8  0.305
1986 Hockensmith JW, Kubasek WL, Vorachek WR, Von Hippel PH. Laser cross-linking of nucleic acids to proteins. Methodology and first applications to the phage T4 DNA replication system Journal of Biological Chemistry. 261: 3512-3518. PMID 3949776  0.352
1986 Kowalczykowski SC, Paul LS, Lonberg N, Newport JW, McSwiggen JA, von Hippel PH. Cooperative and noncooperative binding of protein ligands to nucleic acid lattices: experimental approaches to the determination of thermodynamic parameters. Biochemistry. 25: 1226-40. PMID 3486003 DOI: 10.1021/Bi00354A006  0.735
1986 Von Hippel PH, Berg OG. On the specificity of DNA-protein interactions Proceedings of the National Academy of Sciences of the United States of America. 83: 1608-1612. PMID 3456604  0.359
1985 Bear DG, Andrews CL, Singer JD, Morgan WD, Grant RA, von Hippel PH, Platt T. Escherichia coli transcription termination factor rho has a two-domain structure in its activated form. Proceedings of the National Academy of Sciences of the United States of America. 82: 1911-5. PMID 2580303 DOI: 10.1073/Pnas.82.7.1911  0.798
1985 Morgan WD, Bear DG, Litchman BL, von Hippel PH. RNA sequence and secondary structure requirements for rho-dependent transcription termination. Nucleic Acids Research. 13: 3739-54. PMID 2409526 DOI: 10.1093/Nar/13.10.3739  0.813
1984 Morgan WD, Bear DG, von Hippel PH. Specificity of release by Escherichia coli transcription termination factor rho of nascent mRNA transcripts initiated at the lambda PR. The Journal of Biological Chemistry. 259: 8664-71. PMID 6330119  0.354
1984 von Hippel PH, Bear DG, Morgan WD, McSwiggen JA. Protein-nucleic acid interactions in transcription: a molecular analysis. Annual Review of Biochemistry. 53: 389-446. PMID 6206781 DOI: 10.1146/Annurev.Bi.53.070184.002133  0.808
1983 Fairfield FR, Newport JW, Dolejsi MK, von Hippel PH. On the processivity of DNA replication. Journal of Biomolecular Structure & Dynamics. 1: 715-27. PMID 6400896 DOI: 10.1080/07391102.1983.10507477  0.644
1983 Morgan WD, Bear DG, von Hippel PH. Rho-dependent termination of transcription. II. Kinetics of mRNA elongation during transcription from the bacteriophage lambda PR promoter. The Journal of Biological Chemistry. 258: 9565-74. PMID 6223930  0.367
1983 Morgan WD, Bear DG, von Hippel PH. Rho-dependent termination of transcription. I. Identification and characterization of termination sites for transcription from the bacteriophage lambda PR promoter. The Journal of Biological Chemistry. 258: 9553-64. PMID 6223929  0.364
1982 von Hippel PH, Kowalczykowski SC, Lonberg N, Newport JW, Paul LS, Stormo GD, Gold L. Autoregulation of gene expression. Quantitative evaluation of the expression and function of the bacteriophage T4 gene 32 (single-stranded DNA binding) protein system. Journal of Molecular Biology. 162: 795-818. PMID 6984860 DOI: 10.1016/0022-2836(82)90548-4  0.759
1981 Berg OG, Winter RB, von Hippel PH. Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory Biochemistry. 20: 6929-6948. PMID 7317363  0.389
1981 Kowalczykowski SC, Lonberg N, Newport JW, von Hippel PH. Interactions of bacteriophage T4-coded gene 32 protein with nucleic acids. I. Characterization of the binding interactions. Journal of Molecular Biology. 145: 75-104. PMID 7265204 DOI: 10.1016/0022-2836(81)90335-1  0.739
1981 Newport JW, Lonberg N, Kowalczykowski SC, von Hippel PH. Interactions of bacteriophage T4-coded gene 32 protein with nucleic acids. II. Specificity of binding to DNA and RNA. Journal of Molecular Biology. 145: 105-21. PMID 7265197 DOI: 10.1016/0022-2836(81)90336-3  0.754
1981 Winter RB, Berg OG, Von Hippel PH. Diffusion-driven mechanisms of protein translocation on nucleic acids. III. The Escherichia coli lac repressor-operator interaction: Kinetic measurements and conclusions Biochemistry. 20: 6961-6977. PMID 7032584  0.358
1981 Lonberg N, Kowalczykowski SC, Paul LS, von Hippel PH. Interactions of bacteriophage T4-coded gene 32 protein with nucleic acids. III. Binding properties of two specific proteolytic digestion products of the protein (G32P*I and G32P*III). Journal of Molecular Biology. 145: 123-38. PMID 6455528 DOI: 10.1016/0022-2836(81)90337-5  0.615
1981 Kowalczykowski SC, Bear DG, Von Hippel PH. 21 Single-Stranded DNA Binding Proteins Enzymes. 14: 373-444. DOI: 10.1016/S1874-6047(08)60347-9  0.826
1980 Kowalczykowski SC, Lonberg N, Newport JW, Paul LS, von Hippel PH. On the thermodynamics and kinetics of the cooperative binding of bacteriophage T4-coded gene 32 (helix destabilizing) protein to nucleic acid lattices. Biophysical Journal. 32: 403-18. PMID 6264988 DOI: 10.1016/S0006-3495(80)84964-2  0.762
1980 Woodbury CP, Hagenbüchle O, von Hippel PH. DNA site recognition and reduced specificity of the Eco RI endonuclease Journal of Biological Chemistry. 255: 11534-11548. PMID 6254972  0.303
1979 Draper DE, von Hippel PH. Interaction of Escherichia coli ribosomal protein S1 with ribosomes. Proceedings of the National Academy of Sciences of the United States of America. 76: 1040-4. PMID 375222  0.63
1979 Draper DE, von Hippel PH. Measurement of macromolecular equilibrium binding constants by a sucrose gradient band sedimentation method. Application to protein-nucleic acid interactions. Biochemistry. 18: 753-60. PMID 369606 DOI: 10.1021/Bi00572A003  0.56
1978 Draper DE, von Hippel PH. Nucleic acid binding properties of Escherichia coli ribosomal protein S1. II. Co-operativity and specificity of binding site II. Journal of Molecular Biology. 122: 339-59. PMID 357732 DOI: 10.1016/0022-2836(78)90194-8  0.579
1978 Draper DE, von Hippel PH. Nucleic acid binding properties of Escherichia coli ribosomal protein S1. I. Structure and interactions of binding site I. Journal of Molecular Biology. 122: 321-38. PMID 357731 DOI: 10.1016/0022-2836(78)90193-6  0.606
1978 Draper DE, Von Hippel PH. Determination of co-operativity parameters for nucleic acid binding proteins using oligonucleotides of defined length Journal of Molecular Biology. 122: 355-359.  0.566
1977 McGhee JD, Von Hippel PH. Formaldehyde as a probe of DNA structure. 3. Equilibrium denaturation of DNA and synthetic polynucleotides Biochemistry. 16: 3267-3276. PMID 560859  0.305
1977 Kao-Huang Y, Revzin A, Butler AP, O'Conner P, Noble DW, von Hippel PH. Nonspecific DNA binding of genome-regulating proteins as a biological control mechanism: measurement of DNA-bound Escherichia coli lac repressor in vivo Proceedings of the National Academy of Sciences of the United States of America. 74: 4228-4232. PMID 412185  0.341
1977 Draper DE, Pratt CW, von Hippel PH. Escherichia coli ribosomal protein S1 has two polynucleotide binding sites. Proceedings of the National Academy of Sciences of the United States of America. 74: 4786-90. PMID 337301  0.685
1977 Wang AC, Revzin A, Butler AP, von Hippel PH. Binding of E. coli lac repressor to non operator DNA Nucleic Acids Research. 4: 1579-1593. PMID 331259 DOI: 10.1093/nar/4.5.1579  0.368
1977 Revzin A, Von Hippel PH. Direct measurement of association constants for the binding of Escherichia coli lac repressor to non-operator DNA Biochemistry. 16: 4769-4776. PMID 20938  0.323
1976 Kelly RC, Jensen DE, von Hippel PH. DNA "melting" proteins. IV. Fluorescence measurements of binding parameters for bacteriophage T4 gene 32-protein to mono-, oligo-, and polynucleotides. The Journal of Biological Chemistry. 251: 7240-50. PMID 993212  0.351
1976 Jensen DE, Von Hippel PH. DNA 'melting' proteins. I. Effects of bovine pancreatic ribonuclease binding on the conformation and stability of DNA Journal of Biological Chemistry. 251: 7198-7214. PMID 993211  0.46
1976 Kelly RC, von Hippel PH. DNA "melting" proteins. III. Fluorescence "mapping" of the nucleic acid binding site of bacteriophage T4 gene 32-protein. The Journal of Biological Chemistry. 251: 7229-39. PMID 791946  0.383
1976 Jensen DE, Kelly RC, von Hippel PH. DNA "melting" proteins. II. Effects of bacteriophage T4 gene 32-protein binding on the conformation and stability of nucleic acid structures. The Journal of Biological Chemistry. 251: 7215-28. PMID 791945  0.421
1976 Butler AP, Revzin A, Von Hippel PH. Characterization of the interaction of lac repressor with nonoperator DNA and inducer Biophysical Journal. 16: 90A.  0.306
1974 von Hippel PH, Revzin A, Gross CA, Wang AC. Non-specific DNA binding of genome regulating proteins as a biological control mechanism: I. The lac operon: equilibrium aspects Proceedings of the National Academy of Sciences of the United States of America. 71: 4808-4812. PMID 4612528 DOI: 10.1073/Pnas.71.12.4808  0.648
1973 Melchior WB, Von Hippel PH. Alteration of the relative stability of dA-dT and dG-dC base pairs in DNA Proceedings of the National Academy of Sciences of the United States of America. 70: 298-302. PMID 4346879  0.325
1972 Von Hippel PH, McGhee JD. DNA-protein interactions Annual Review of Biochemistry. 41: 231-300. PMID 4570958  0.322
1972 Laiken SL, Gross CA, von Hippel PH. Equilibrium and kinetic studies of Escherichia coli lac repressor-inducer interactions Journal of Molecular Biology. 66: 143-155. PMID 4557195 DOI: 10.1016/S0022-2836(72)80012-3  0.555
1971 Schleich T, Rollefson B, Von Hippel PH. Proton exchange of N-methylacetamide in concentrated aqueous electrolyte solutions. II. Acid catalysis in water-dioxane mixtures and base catalysis Journal of the American Chemical Society. 93: 7070-7074.  0.677
1970 Schleich T, von Hippel PH. Ion-induced water-proton chemical shifts and the conformational stability of macromolecules. Biochemistry. 9: 1059-66. PMID 4313934  0.672
1968 Olins DE, Olins AL, Von Hippel PH. On the structure and stability of DNA-Protamine and DNA-polypeptide complexes Journal of Molecular Biology. 33: 265-281. PMID 5646647  0.317
1968 Wingert L, Von Hippel PH. The conformation dependent hydrolysis of DNA by micrococcal nuclease Bba Section Nucleic Acids and Protein Synthesis. 157: 114-126. PMID 4296058  0.331
1967 Olins DE, Olins AL, von Hippel PH. Model nucleoprotein complexes: Studies on the interaction of cationic homopolypeptides with DNA Journal of Molecular Biology. 24: 157-176. PMID 6030025  0.308
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