Andrew S. McCallion - Publications

Affiliations: 
Johns Hopkins University, Baltimore, MD 
Area:
Cell Biology, Molecular Biology, Neuroscience Biology

39/55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Fufa TD, Harris ML, Watkins-Chow DE, Levy D, Gorkin DU, Gildea DE, Song L, Safi A, Crawford GE, Sviderskaya EV, Bennett DC, Mccallion AS, Loftus SK, Pavan WJ. Genomic analysis reveals distinct mechanisms and functional classes of SOX10-regulated genes in melanocytes. Human Molecular Genetics. 24: 5433-50. PMID 26206884 DOI: 10.1093/hmg/ddv267  0.48
2015 Lee D, Gorkin DU, Baker M, Strober BJ, Asoni AL, McCallion AS, Beer MA. A method to predict the impact of regulatory variants from DNA sequence. Nature Genetics. PMID 26075791 DOI: 10.1038/ng.3331  0.48
2015 Fischer A, Wolman M, Granato M, Parsons M, McCallion AS, Proescher J, English E. Carbamate nerve agent prophylatics exhibit distinct toxicological effects in the zebrafish embryo model. Neurotoxicology and Teratology. 50: 1-10. PMID 25968237 DOI: 10.1016/j.ntt.2015.05.001  0.48
2015 Xiang Y, Stine ZE, Xia J, Lu Y, O'Connor RS, Altman BJ, Hsieh AL, Gouw AM, Thomas AG, Gao P, Sun L, Song L, Yan B, Slusher BS, Zhuo J, ... ... McCallion AS, et al. Targeted inhibition of tumor-specific glutaminase diminishes cell-autonomous tumorigenesis. The Journal of Clinical Investigation. 125: 2293-306. PMID 25915584 DOI: 10.1172/JCI75836  0.48
2015 Jiang Q, Arnold S, Heanue T, Kilambi KP, Doan B, Kapoor A, Ling AY, Sosa MX, Guy M, Jiang Q, Burzynski G, West K, Bessling S, Griseri P, Amiel J, ... ... McCallion AS, et al. Functional loss of semaphorin 3C and/or semaphorin 3D and their epistatic interaction with ret are critical to Hirschsprung disease liability. American Journal of Human Genetics. 96: 581-96. PMID 25839327 DOI: 10.1016/j.ajhg.2015.02.014  0.48
2014 Liu Y, Pham X, Zhang L, Chen PL, Burzynski G, McGaughey DM, He S, McGrath JA, Wolyniec P, Fallin MD, Pierce MS, McCallion AS, Pulver AE, Avramopoulos D, Valle D. Functional variants in DPYSL2 sequence increase risk of schizophrenia and suggest a link to mTOR signaling. G3 (Bethesda, Md.). 5: 61-72. PMID 25416705 DOI: 10.1534/g3.114.015636  0.48
2014 Maragh S, Miller RA, Bessling SL, Wang G, Hook PW, McCallion AS. Rbm24a and Rbm24b are required for normal somitogenesis. Plos One. 9: e105460. PMID 25170925 DOI: 10.1371/journal.pone.0105460  0.56
2013 Praetorius C, Grill C, Stacey SN, Metcalf AM, Gorkin DU, Robinson KC, Van Otterloo E, Kim RS, Bergsteinsdottir K, Ogmundsdottir MH, Magnusdottir E, Mishra PJ, Davis SR, Guo T, Zaidi MR, ... ... McCallion AS, et al. A polymorphism in IRF4 affects human pigmentation through a tyrosinase-dependent MITF/TFAP2A pathway. Cell. 155: 1022-33. PMID 24267888 DOI: 10.1016/j.cell.2013.10.022  0.48
2013 Pol SU, Lang JK, O'Bara MA, Cimato TR, McCallion AS, Sim FJ. Sox10-MCS5 enhancer dynamically tracks human oligodendrocyte progenitor fate. Experimental Neurology. 247: 694-702. PMID 23507034 DOI: 10.1016/j.expneurol.2013.03.010  0.48
2012 Doyle AJ, Doyle JJ, Bessling SL, Maragh S, Lindsay ME, Schepers D, Gillis E, Mortier G, Homfray T, Sauls K, Norris RA, Huso ND, Leahy D, Mohr DW, Caulfield MJ, ... ... McCallion AS, et al. Mutations in the TGF-β repressor SKI cause Shprintzen-Goldberg syndrome with aortic aneurysm. Nature Genetics. 44: 1249-54. PMID 23023332 DOI: 10.1038/ng.2421  0.48
2012 Gorkin DU, Lee D, Reed X, Fletez-Brant C, Bessling SL, Loftus SK, Beer MA, Pavan WJ, McCallion AS. Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes. Genome Research. 22: 2290-301. PMID 23019145 DOI: 10.1101/gr.139360.112  0.56
2012 Burzynski GM, Reed X, Taher L, Stine ZE, Matsui T, Ovcharenko I, McCallion AS. Systematic elucidation and in vivo validation of sequences enriched in hindbrain transcriptional control. Genome Research. 22: 2278-89. PMID 22759862 DOI: 10.1101/gr.139717.112  0.48
2012 Harden MV, Pereiro L, Ramialison M, Wittbrodt J, Prasad MK, McCallion AS, Whitlock KE. Close association of olfactory placode precursors and cranial neural crest cells does not predestine cell mixing. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 241: 1143-54. PMID 22539261 DOI: 10.1002/dvdy.23797  0.48
2012 Hodonsky CJ, Kleinbrink EL, Charney KN, Prasad M, Bessling SL, Jones EA, Srinivasan R, Svaren J, McCallion AS, Antonellis A. SOX10 regulates expression of the SH3-domain kinase binding protein 1 (Sh3kbp1) locus in Schwann cells via an alternative promoter. Molecular and Cellular Neurosciences. 49: 85-96. PMID 22037207 DOI: 10.1016/j.mcn.2011.10.004  0.48
2011 Maragh S, Miller RA, Bessling SL, McGaughey DM, Wessels MW, de Graaf B, Stone EA, Bertoli-Avella AM, Gearhart JD, Fisher S, McCallion AS. Identification of RNA binding motif proteins essential for cardiovascular development. Bmc Developmental Biology. 11: 62. PMID 22011202 DOI: 10.1186/1471-213X-11-62  0.56
2011 Cox JA, McAdow AR, Dinitz AE, McCallion AS, Johnson SL, Voigt MM. A zebrafish SKIV2L2-enhancer trap line provides a useful tool for the study of peripheral sensory circuit development. Gene Expression Patterns : Gep. 11: 409-14. PMID 21742057 DOI: 10.1016/j.gep.2011.06.002  0.48
2011 Stine ZE, McGaughey DM, Bessling SL, Li S, McCallion AS. Steroid hormone modulation of RET through two estrogen responsive enhancers in breast cancer. Human Molecular Genetics. 20: 3746-56. PMID 21737465 DOI: 10.1093/hmg/ddr291  0.56
2011 Prasad MK, Reed X, Gorkin DU, Cronin JC, McAdow AR, Chain K, Hodonsky CJ, Jones EA, Svaren J, Antonellis A, Johnson SL, Loftus SK, Pavan WJ, McCallion AS. SOX10 directly modulates ERBB3 transcription via an intronic neural crest enhancer. Bmc Developmental Biology. 11: 40. PMID 21672228 DOI: 10.1186/1471-213X-11-40  0.48
2011 Taher L, McGaughey DM, Maragh S, Aneas I, Bessling SL, Miller W, Nobrega MA, McCallion AS, Ovcharenko I. Genome-wide identification of conserved regulatory function in diverged sequences. Genome Research. 21: 1139-49. PMID 21628450 DOI: 10.1101/gr.119016.110  0.56
2010 Antonellis A, Dennis MY, Burzynski G, Huynh J, Maduro V, Hodonsky CJ, Khajavi M, Szigeti K, Mukkamala S, Bessling SL, Pavan WJ, McCallion AS, Lupski JR, Green ED. A rare myelin protein zero (MPZ) variant alters enhancer activity in vitro and in vivo. Plos One. 5: e14346. PMID 21179557 DOI: 10.1371/journal.pone.0014346  0.48
2010 Emison ES, Garcia-Barcelo M, Grice EA, Lantieri F, Amiel J, Burzynski G, Fernandez RM, Hao L, Kashuk C, West K, Miao X, Tam PK, Griseri P, Ceccherini I, Pelet A, ... ... McCallion AS, et al. Differential contributions of rare and common, coding and noncoding Ret mutations to multifactorial Hirschsprung disease liability. American Journal of Human Genetics. 87: 60-74. PMID 20598273 DOI: 10.1016/j.ajhg.2010.06.007  0.48
2010 Noonan JP, McCallion AS. Genomics of long-range regulatory elements. Annual Review of Genomics and Human Genetics. 11: 1-23. PMID 20438361 DOI: 10.1146/annurev-genom-082509-141651  0.48
2010 McGaughey DM, McCallion AS. Efficient discovery of ASCL1 regulatory sequences through transgene pooling. Genomics. 95: 363-9. PMID 20206680 DOI: 10.1016/j.ygeno.2010.02.011  0.56
2009 Stine ZE, Huynh JL, Loftus SK, Gorkin DU, Salmasi AH, Novak T, Purves T, Miller RA, Antonellis A, Gearhart JP, Pavan WJ, McCallion AS. Oligodendroglial and pan-neural crest expression of Cre recombinase directed by Sox10 enhancer. Genesis (New York, N.Y. : 2000). 47: 765-70. PMID 19830815 DOI: 10.1002/dvg.20559  0.48
2009 de Pontual L, Zaghloul NA, Thomas S, Davis EE, McGaughey DM, Dollfus H, Baumann C, Bessling SL, Babarit C, Pelet A, Gascue C, Beales P, Munnich A, Lyonnet S, Etchevers H, ... ... McCallion AS, et al. Epistasis between RET and BBS mutations modulates enteric innervation and causes syndromic Hirschsprung disease. Proceedings of the National Academy of Sciences of the United States of America. 106: 13921-6. PMID 19666486 DOI: 10.1073/pnas.0901219106  0.48
2009 McGaughey DM, Stine ZE, Huynh JL, Vinton RM, McCallion AS. Asymmetrical distribution of non-conserved regulatory sequences at PHOX2B is reflected at the ENCODE loci and illuminates a possible genome-wide trend Bmc Genomics. 10. PMID 19128492 DOI: 10.1186/1471-2164-10-8  0.48
2009 Loftus SK, Antonellis A, Matera I, Renaud G, Baxter LL, Reid D, Wolfsberg TG, Chen Y, Wang C, Prasad MK, Bessling SL, McCallion AS, Green ED, Bennett DC, et al. Gpnmb is a melanoblast-expressed, MITF-dependent gene. Pigment Cell & Melanoma Research. 22: 99-110. PMID 18983539 DOI: 10.1111/j.1755-148X.2008.00518.x  0.48
2008 Antonellis A, Huynh JL, Lee-Lin SQ, Vinton RM, Renaud G, Loftus SK, Elliot G, Wolfsberg TG, Green ED, McCallion AS, Pavan WJ. Identification of neural crest and glial enhancers at the mouse Sox10 locus through transgenesis in zebrafish Plos Genetics. 4. PMID 18773071 DOI: 10.1371/journal.pgen.1000174  0.48
2008 Miller RA, Christoforou N, Pevsner J, McCallion AS, Gearhart JD. Efficient array-based identification of novel cardiac genes through differentiation of mouse ESCs. Plos One. 3: e2176. PMID 18478100 DOI: 10.1371/journal.pone.0002176  0.48
2008 McGaughey DM, Vinton RM, Huynh J, Al-Saif A, Beer MA, McCallion AS. Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b Genome Research. 18: 252-260. PMID 18071029 DOI: 10.1101/gr.6929408  0.48
2007 Xie J, Bessling SL, Cooper TK, Dietz HC, McCallion AS, Fisher S. Manipulating mitotic recombination in the zebrafish embryo through RecQ helicases. Genetics. 176: 1339-42. PMID 17483412 DOI: 10.1534/genetics.107.072983  0.56
2006 Fisher S, Grice EA, Vinton RM, Bessling SL, Urasaki A, Kawakami K, McCallion AS. Evaluating the biological relevance of putative enhancers using Tol2 transposon-mediated transgenesis in zebrafish. Nature Protocols. 1: 1297-305. PMID 17406414 DOI: 10.1038/nprot.2006.230  0.56
2006 Cranston AN, Carniti C, Oakhill K, Radzio-Andzelm E, Stone EA, McCallion AS, Hodgson S, Clarke S, Mondellini P, Leyland J, Pierotti MA, Whittaker J, Taylor SS, Bongarzone I, Ponder BA. RET is constitutively activated by novel tandem mutations that alter the active site resulting in multiple endocrine neoplasia type 2B. Cancer Research. 66: 10179-87. PMID 17047083 DOI: 10.1158/0008-5472.CAN-06-0884  0.48
2006 Fisher S, Grice EA, Vinton RM, Bessling SL, McCallion AS. Conservation of RET regulatory function from human to zebrafish without sequence similarity. Science (New York, N.Y.). 312: 276-9. PMID 16556802 DOI: 10.1126/science.1124070  0.56
2005 Grice EA, Rochelle ES, Green ED, Chakravarti A, McCallion AS. Evaluation of the RET regulatory landscape reveals the biological relevance of a HSCR-implicated enhancer. Human Molecular Genetics. 14: 3837-45. PMID 16269442 DOI: 10.1093/hmg/ddi408  0.56
2005 Kashuk CS, Stone EA, Grice EA, Portnoy ME, Green ED, Sidow A, Chakravarti A, McCallion AS. Phenotype-genotype correlation in Hirschsprung disease is illuminated by comparative analysis of the RET protein sequence. Proceedings of the National Academy of Sciences of the United States of America. 102: 8949-54. PMID 15956201 DOI: 10.1073/pnas.0503259102  0.56
2005 Emison ES, McCallion AS, Kashuk CS, Bush RT, Grice E, Lin S, Portnoy ME, Cutler DJ, Green ED, Chakravarti A. A common sex-dependent mutation in a RET enhancer underlies Hirschsprung disease risk. Nature. 434: 857-63. PMID 15829955 DOI: 10.1038/nature03467  0.48
2003 McCallion AS, Stames E, Conlon RA, Chakravarti A. Phenotype variation in two-locus mouse models of Hirschsprung disease: tissue-specific interaction between Ret and Ednrb. Proceedings of the National Academy of Sciences of the United States of America. 100: 1826-31. PMID 12574515 DOI: 10.1073/pnas.0337540100  0.48
2002 Carrasquillo MM, McCallion AS, Puffenberger EG, Kashuk CS, Nouri N, Chakravarti A. Genome-wide association study and mouse model identify interaction between RET and EDNRB pathways in Hirschsprung disease. Nature Genetics. 32: 237-44. PMID 12355085 DOI: 10.1038/ng998  0.48
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2018 McClymont SA, Hook PW, Soto AI, Reed X, Law WD, Kerans SJ, Waite EL, Briceno NJ, Thole JF, Heckman MG, Diehl NN, Wszolek ZK, Moore CD, Zhu H, Akiyama JA, ... ... McCallion AS, et al. Parkinson-Associated SNCA Enhancer Variants Revealed by Open Chromatin in Mouse Dopamine Neurons. American Journal of Human Genetics. 103: 874-892. PMID 30503521 DOI: 10.1016/j.ajhg.2018.10.018  0.28
2017 Wang D, Wu F, Yuan H, Wang A, Kang GJ, Truong T, Chen L, McCallion AS, Gong X, Li S. Sox10+ Cells Contribute to Vascular Development in Multiple Organs. Arteriosclerosis, Thrombosis, and Vascular Biology. PMID 28751573 DOI: 10.1161/ATVBAHA.117.309774  0.28
2013 Fletez-Brant C, Lee D, McCallion AS, Beer MA. kmer-SVM: a web server for identifying predictive regulatory sequence features in genomic data sets. Nucleic Acids Research. 41: W544-56. PMID 23771147 DOI: 10.1093/nar/gkt519  0.28
2010 Zhu YT, Jia Y, Hu L, Qi C, Prasad MK, McCallion AS, Zhu YJ. Peroxisome-proliferator-activated receptor-binding protein (PBP) is essential for the growth of active Notch4-immortalized mammary epithelial cells by activating SOX10 expression. The Biochemical Journal. 425: 435-44. PMID 19852756 DOI: 10.1042/BJ20091237  0.2
2018 Gould RA, Aziz H, Woods CE, Seman-Senderos MA, Sparks E, Preuss C, Wünnemann F, Bedja D, Moats CR, McClymont SA, Rose R, Sobreira N, Ling H, MacCarrick G, Kumar AA, ... ... McCallion AS, et al. ROBO4 variants predispose individuals to bicuspid aortic valve and thoracic aortic aneurysm. Nature Genetics. PMID 30455415 DOI: 10.1038/s41588-018-0265-y  0.12
2018 Hook PW, McClymont SA, Cannon GH, Law WD, Morton AJ, Goff LA, McCallion AS. Single-Cell RNA-Seq of Mouse Dopaminergic Neurons Informs Candidate Gene Selection for Sporadic Parkinson Disease. American Journal of Human Genetics. 102: 427-446. PMID 29499164 DOI: 10.1016/j.ajhg.2018.02.001  0.12
2017 Gillis E, Kumar AA, Luyckx I, Preuss C, Cannaerts E, van de Beek G, Wieschendorf B, Alaerts M, Bolar N, Vandeweyer G, Meester J, Wünnemann F, Gould RA, Zhurayev R, Zerbino D, ... ... McCallion AS, et al. Corrigendum: Candidate Gene Resequencing in a Large Bicuspid Aortic Valve-Associated Thoracic Aortic Aneurysm Cohort: SMAD6 as an Important Contributor. Frontiers in Physiology. 8: 730. PMID 28974934 DOI: 10.3389/fphys.2017.00730  0.12
2017 Gillis E, Kumar AA, Luyckx I, Preuss C, Cannaerts E, van de Beek G, Wieschendorf B, Alaerts M, Bolar N, Vandeweyer G, Meester J, Wünnemann F, Gould RA, Zhurayev R, Zerbino D, ... ... McCallion AS, et al. Candidate Gene Resequencing in a Large Bicuspid Aortic Valve-Associated Thoracic Aortic Aneurysm Cohort: SMAD6 as an Important Contributor. Frontiers in Physiology. 8: 400. PMID 28659821 DOI: 10.3389/fphys.2017.00400  0.12
2015 Turner TN, Hormozdiari F, Duyzend MH, McClymont SA, Hook PW, Iossifov I, Raja A, Baker C, Hoekzema K, Stessman HA, Zody MC, Nelson BJ, Huddleston J, Sandstrom R, Smith JD, ... ... McCallion AS, et al. Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA. American Journal of Human Genetics. PMID 26749308 DOI: 10.1016/j.ajhg.2015.11.023  0.12
2013 Burzynski GM, Reed X, Maragh S, Matsui T, McCallion AS. Integration of genomic and functional approaches reveals enhancers at LMX1A and LMX1B. Molecular Genetics and Genomics : Mgg. 288: 579-89. PMID 23942840 DOI: 10.1007/s00438-013-0771-7  0.12
2008 Christoforou N, Miller RA, Hill CM, Jie CC, McCallion AS, Gearhart JD. Mouse ES cell-derived cardiac precursor cells are multipotent and facilitate identification of novel cardiac genes. The Journal of Clinical Investigation. 118: 894-903. PMID 18246200 DOI: 10.1172/JCI33942  0.12
2018 Edie S, Zaghloul NA, Leitch CC, Klinedinst DK, Lebron J, Thole JF, McCallion AS, Katsanis N, Reeves RH. Survey of Human Chromosome 21 Gene Expression Effects on Early Development in . G3 (Bethesda, Md.). PMID 29760202 DOI: 10.1534/g3.118.200144  0.04
2020 Law W, Warren RL, McCallion AS. Establishment of an eHAP1 human haploid cell line hybrid reference genome assembled from short and long reads. Genomics. PMID 31962144 DOI: 10.1016/j.ygeno.2020.01.009  0.01
2016 Eckart N, Song Q, Yang R, Wang R, Zhu H, McCallion AS, Avramopoulos D. Functional Characterization of Schizophrenia-Associated Variation in CACNA1C. Plos One. 11: e0157086. PMID 27276213 DOI: 10.1371/journal.pone.0157086  0.01
2006 Montague P, McCallion AS, Davies RW, Griffiths IR. Myelin-associated oligodendrocytic basic protein: a family of abundant CNS myelin proteins in search of a function. Developmental Neuroscience. 28: 479-87. PMID 17028425 DOI: 10.1159/000095110  0.01
2005 Montague P, McCallion AS, Barrie JE, Edgar JM, McLaughlin M, Davies RW, Griffiths IR. Characterization of the murine splice variant Mobp155: developmental CNS expression pattern and subcellular localization of epitope-tagged protein. Glia. 50: 80-5. PMID 15625715 DOI: 10.1002/glia.20155  0.01
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