| Year |
Citation |
Score |
| 2018 |
Arora R, Bharval P, Sarswati S, Sen TZ, Yennamalli RM. Structural dynamics of lytic polysaccharide monoxygenases reveals a highly flexible substrate binding region. Journal of Molecular Graphics & Modelling. 88: 1-10. PMID 30612037 DOI: 10.1016/J.Jmgm.2018.12.012 |
0.523 |
|
| 2018 |
Arora M, Yennamalli RM, Sen TZ. Application of Molecular Simulations Toward Understanding Cellulase Mechanisms Bioenergy Research. 11: 850-867. DOI: 10.1007/S12155-018-9944-X |
0.496 |
|
| 2018 |
Arora M, Yennamalli RM, Sen TZ. Application of Molecular Simulations Toward Understanding Cellulase Mechanisms Bioenergy Research. 11: 850-867. DOI: 10.1007/s12155-018-9944-x |
0.363 |
|
| 2017 |
Kandoi G, Leelananda SP, Jernigan RL, Sen TZ. Predicting Protein Secondary Structure Using Consensus Data Mining (CDM) Based on Empirical Statistics and Evolutionary Information. Methods in Molecular Biology (Clifton, N.J.). 1484: 35-44. PMID 27787818 DOI: 10.1007/978-1-4939-6406-2_4 |
0.758 |
|
| 2016 |
Jones DC, Zheng W, Huang S, Du C, Zhao X, Yennamalli RM, Sen TZ, Nettleton D, Wurtele ES, Li L. A Clade-Specific Arabidopsis Gene Connects Primary Metabolism and Senescence. Frontiers in Plant Science. 7: 983. PMID 27462324 DOI: 10.3389/Fpls.2016.00983 |
0.454 |
|
| 2015 |
Andorf CM, Cannon EK, Portwood JL, Gardiner JM, Harper LC, Schaeffer ML, Braun BL, Campbell DA, Vinnakota AG, Sribalusu VV, Huerta M, Cho KT, Wimalanathan K, Richter JD, Mauch ED, ... ... Sen TZ, et al. MaizeGDB update: new tools, data and interface for the maize model organism database. Nucleic Acids Research. PMID 26432828 DOI: 10.1093/Nar/Gkv1007 |
0.305 |
|
| 2014 |
Walsh JR, Sen TZ, Dickerson JA. A computational platform to maintain and migrate manual functional annotations for BioCyc databases. Bmc Systems Biology. 8: 115. PMID 25304126 DOI: 10.1186/S12918-014-0115-1 |
0.319 |
|
| 2014 |
Ilgu M, Fulton DB, Yennamalli RM, Lamm MH, Sen TZ, Nilsen-Hamilton M. An adaptable pentaloop defines a robust neomycin-B RNA aptamer with conditional ligand-bound structures. Rna (New York, N.Y.). 20: 815-24. PMID 24757168 DOI: 10.1261/Rna.041145.113 |
0.477 |
|
| 2013 |
Yennamalli RM, Rader AJ, Kenny AJ, Wolt JD, Sen TZ. Endoglucanases: insights into thermostability for biofuel applications. Biotechnology For Biofuels. 6: 136. PMID 24070146 DOI: 10.1186/1754-6834-6-136 |
0.452 |
|
| 2013 |
Andorf CM, Honavar V, Sen TZ. Predicting the binding patterns of hub proteins: a study using yeast protein interaction networks. Plos One. 8: e56833. PMID 23431393 DOI: 10.1371/Journal.Pone.0056833 |
0.396 |
|
| 2013 |
Monaco MK, Sen TZ, Dharmawardhana PD, Ren L, Schaeffer M, Naithani S, Amarasinghe V, Thomason J, Harper L, Gardiner J, Cannon EK, Lawrence CJ, Ware D, Jaiswal P. Maize Metabolic Network Construction and Transcriptome Analysis The Plant Genome. 6: plantgenome2012.09.0. DOI: 10.3835/Plantgenome2012.09.0025 |
0.302 |
|
| 2012 |
Rader AJ, Yennamalli RM, Harter AK, Sen TZ. A rigid network of long-range contacts increases thermostability in a mutant endoglucanase. Journal of Biomolecular Structure & Dynamics. 30: 628-37. PMID 22731517 DOI: 10.1080/07391102.2012.689696 |
0.544 |
|
| 2011 |
Yennamalli RM, Wolt JD, Sen TZ. Dynamics of endoglucanase catalytic domains: implications towards thermostability. Journal of Biomolecular Structure & Dynamics. 29: 509-26. PMID 22066537 DOI: 10.1080/07391102.2011.10507402 |
0.526 |
|
| 2011 |
Yennamalli RM, Rader AJ, Wolt JD, Sen TZ. Thermostability in endoglucanases is fold-specific. Bmc Structural Biology. 11: 10. PMID 21291533 DOI: 10.1186/1472-6807-11-10 |
0.532 |
|
| 2011 |
Yennamalli RM, Wolt JD, Rader AJ, Sen TZ. Sequence, Structure and Dynamics Analysis of Thermostability in Endoglucanases Biophysical Journal. 100: 536a. DOI: 10.1016/J.Bpj.2010.12.3126 |
0.54 |
|
| 2010 |
Yennamalli RM, Wolt JD, Sen TZ. Origins of Thermophilicity in Endoglucanases Biophysical Journal. 98: 455a. DOI: 10.1016/J.Bpj.2009.12.2472 |
0.543 |
|
| 2010 |
Yennamalli RM, Wolt JD, Sen TZ. Origins of Thermophilicity in Endoglucanases Biophysical Journal. 98: 455a. DOI: 10.1016/j.bpj.2009.12.2472 |
0.356 |
|
| 2009 |
Sen TZ, Andorf CM, Schaeffer ML, Harper LC, Sparks ME, Duvick J, Brendel VP, Cannon E, Campbell DA, Lawrence CJ. MaizeGDB becomes 'sequence-centric'. Database : the Journal of Biological Databases and Curation. 2009: bap020. PMID 21847242 DOI: 10.1093/Database/Bap020 |
0.301 |
|
| 2008 |
Kurkcuoglu O, Doruker P, Sen TZ, Kloczkowski A, Jernigan RL. The ribosome structure controls and directs mRNA entry, translocation and exit dynamics. Physical Biology. 5: 046005. PMID 19029596 DOI: 10.1088/1478-3975/5/4/046005 |
0.685 |
|
| 2008 |
Sen TZ, Kloster M, Jernigan RL, Kolinski A, Bujnicki JM, Kloczkowski A. Predicting the complex structure and functional motions of the outer membrane transporter and signal transducer FecA. Biophysical Journal. 94: 2482-91. PMID 18178655 DOI: 10.1529/Biophysj.107.116046 |
0.54 |
|
| 2008 |
Sułkowska JI, Kloczkowski A, Sen TZ, Cieplak M, Jernigan RL. Predicting the order in which contacts are broken during single molecule protein stretching experiments. Proteins. 71: 45-60. PMID 17932935 DOI: 10.1002/Prot.21652 |
0.582 |
|
| 2007 |
Peto M, Sen TZ, Jernigan RL, Kloczkowski A. Generation and enumeration of compact conformations on the two-dimensional triangular and three-dimensional fcc lattices. The Journal of Chemical Physics. 127: 044101. PMID 17672675 DOI: 10.1063/1.2751169 |
0.724 |
|
| 2007 |
Cheng H, Sen TZ, Jernigan RL, Kloczkowski A. Consensus Data Mining (CDM) Protein Secondary Structure Prediction Server: combining GOR V and Fragment Database Mining (FDM). Bioinformatics (Oxford, England). 23: 2628-30. PMID 17660202 DOI: 10.1093/Bioinformatics/Btm379 |
0.75 |
|
| 2006 |
Sen TZ, Feng Y, Garcia JV, Kloczkowski A, Jernigan RL. The Extent of Cooperativity of Protein Motions Observed with Elastic Network Models Is Similar for Atomic and Coarser-Grained Models. Journal of Chemical Theory and Computation. 2: 696-704. PMID 17710199 DOI: 10.1021/Ct600060D |
0.677 |
|
| 2006 |
Sen TZ, Cheng H, Kloczkowski A, Jernigan RL. A Consensus Data Mining secondary structure prediction by combining GOR V and Fragment Database Mining. Protein Science : a Publication of the Protein Society. 15: 2499-506. PMID 17001039 DOI: 10.1110/Ps.062125306 |
0.738 |
|
| 2006 |
Sen TZ, Kloczkowski A, Jernigan RL. A DNA-centric look at protein-DNA complexes. Structure (London, England : 1993). 14: 1341-2. PMID 16962964 DOI: 10.1016/J.Str.2006.08.003 |
0.521 |
|
| 2006 |
Sen TZ, Kloczkowski A, Jernigan RL. Functional clustering of yeast proteins from the protein-protein interaction network. Bmc Bioinformatics. 7: 355. PMID 16863590 DOI: 10.1186/1471-2105-7-355 |
0.542 |
|
| 2005 |
Cheng H, Sen TZ, Kloczkowski A, Margaritis D, Jernigan RL. Prediction of protein secondary structure by mining structural fragment database. Polymer. 46: 4314-4321. PMID 19081746 DOI: 10.1016/J.Polymer.2005.02.040 |
0.743 |
|
| 2005 |
Fernández A, Tawfik DS, Berkhout B, Sanders R, Kloczkowski A, Sen T, Jernigan B. Protein promiscuity: drug resistance and native functions--HIV-1 case. Journal of Biomolecular Structure & Dynamics. 22: 615-24. PMID 15842167 DOI: 10.1080/07391102.2005.10531228 |
0.341 |
|
| 2005 |
Sen TZ, Jernigan RL, Garnier J, Kloczkowski A. GOR V server for protein secondary structure prediction. Bioinformatics (Oxford, England). 21: 2787-8. PMID 15797907 DOI: 10.1093/Bioinformatics/Bti408 |
0.572 |
|
| 2004 |
Sen TZ, Kloczkowski A, Jernigan RL, Yan C, Honavar V, Ho KM, Wang CZ, Ihm Y, Cao H, Gu X, Dobbs D. Predicting binding sites of hydrolase-inhibitor complexes by combining several methods. Bmc Bioinformatics. 5: 205. PMID 15606919 DOI: 10.1186/1471-2105-5-205 |
0.565 |
|
| 2004 |
Kloczkowski A, Sen TZ, Jernigan RL. The transfer matrix method for lattice proteins—an application with cooperative interactions Polymer. 45: 707-716. DOI: 10.1016/J.Polymer.2003.10.072 |
0.546 |
|
| 2002 |
Valladares D, Toki S, Sen T, Yalcin B, Cakmak M. The effect of natural rubber crosslink density on real time birefringence, true stress and true strain behavior Macromolecular Symposia. 185: 149-166. DOI: 10.1002/1521-3900(200208)185:1<149::Aid-Masy149>3.0.Co;2-8 |
0.47 |
|
| 2001 |
Konuklar FA, Aviyente V, Sen TZ, Bahar I. Modeling the deamidation of asparagine residues via succinimide intermediates Journal of Molecular Modeling. 7: 147-160. DOI: 10.1007/S008940100025 |
0.574 |
|
| 1999 |
Sen TZ, Bahar I, Erman B, Lauprêtre F, Monnerie L. Local dynamics of cis-1,4-polybutadiene and cis-1,4-polyisoprene. A comparative study based on cooperative kinematics theory and NMR experiments Macromolecules. 32: 3017-3024. DOI: 10.1021/Ma9811167 |
0.677 |
|
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