Joshua H. Siegle - Publications

Neural Coding Allen Institute for Brain Science, Seattle, WA, United States 
visual cortex, electrophysiology, optogenetics

25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Jia X, Siegle JH, Durand S, Heller G, Ramirez TK, Koch C, Olsen SR. Multi-regional module-based signal transmission in mouse visual cortex. Neuron. PMID 35143752 DOI: 10.1016/j.neuron.2022.01.027  0.489
2021 Lecoq J, Oliver M, Siegle JH, Orlova N, Ledochowitsch P, Koch C. Removing independent noise in systems neuroscience data using DeepInterpolation. Nature Methods. 18: 1401-1408. PMID 34650233 DOI: 10.1038/s41592-021-01285-2  0.715
2021 Petersen PC, Siegle JH, Steinmetz NA, Mahallati S, Buzsáki G. CellExplorer: A framework for visualizing and characterizing single neurons. Neuron. PMID 34592168 DOI: 10.1016/j.neuron.2021.09.002  0.317
2021 Siegle JH, Ledochowitsch P, Jia X, Millman DJ, Ocker GK, Caldejon S, Casal L, Cho A, Denman DJ, Durand S, Groblewski PA, Heller G, Kato I, Kivikas S, Lecoq J, et al. Reconciling functional differences in populations of neurons recorded with two-photon imaging and electrophysiology. Elife. 10. PMID 34270411 DOI: 10.7554/eLife.69068  0.768
2021 Siegle JH, Jia X, Durand S, Gale S, Bennett C, Graddis N, Heller G, Ramirez TK, Choi H, Luviano JA, Groblewski PA, Ahmed R, Arkhipov A, Bernard A, Billeh YN, et al. Survey of spiking in the mouse visual system reveals functional hierarchy. Nature. PMID 33473216 DOI: 10.1038/s41586-020-03171-x  0.761
2020 Billeh YN, Cai B, Gratiy SL, Dai K, Iyer R, Gouwens NW, Abbasi-Asl R, Jia X, Siegle JH, Olsen SR, Koch C, Mihalas S, Arkhipov A. Systematic Integration of Structural and Functional Data into Multi-scale Models of Mouse Primary Visual Cortex. Neuron. PMID 32142648 DOI: 10.1016/J.Neuron.2020.01.040  0.464
2019 Putzeys J, Raducanu BC, Carton A, De Ceulaer J, Karsh B, Siegle JH, Van Helleputte N, Harris TD, Dutta B, Musa S, Lopez CM. Neuropixels Data-Acquisition System: A Scalable Platform for Parallel Recording of 10,000+ Electrophysiological Signals. Ieee Transactions On Biomedical Circuits and Systems. PMID 31545742 DOI: 10.1109/TBCAS.2019.2943077  0.307
2019 Jia X, Siegle JH, Bennett C, Gale SD, Denman DJ, Koch C, Olsen SR. High-density extracellular probes reveal dendritic backpropagation and facilitate neuron classification. Journal of Neurophysiology. PMID 30840526 DOI: 10.1152/Jn.00680.2018  0.783
2017 Jun JJ, Steinmetz NA, Siegle JH, Denman DJ, Bauza M, Barbarits B, Lee AK, Anastassiou CA, Andrei A, Aydın Ç, Barbic M, Blanche TJ, Bonin V, Couto J, Dutta B, et al. Fully integrated silicon probes for high-density recording of neural activity. Nature. 551: 232-236. PMID 29120427 DOI: 10.1038/Nature24636  0.753
2017 Siegle JH, Cuevas López A, Patel Y, Abramov K, Ohayon S, Voigts J. Open Ephys: An open-source, plugin-based platform for multichannel electrophysiology. Journal of Neural Engineering. PMID 28169219 DOI: 10.1088/1741-2552/Aa5Eea  0.727
2016 Denman DJ, Siegle JH, Koch C, Reid RC, Blanche TJ. Spatial organization of chromatic pathways in the mouse dorsal lateral geniculate nucleus. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 27986926 DOI: 10.1523/Jneurosci.1742-16.2016  0.743
2015 Teeters JL, Godfrey K, Young R, Dang C, Friedsam C, Wark B, Asari H, Peron S, Li N, Peyrache A, Denisov G, Siegle JH, Olsen SR, Martin C, Chun M, et al. Neurodata Without Borders: Creating a Common Data Format for Neurophysiology. Neuron. 88: 629-634. PMID 26590340 DOI: 10.1016/J.Neuron.2015.10.025  0.706
2015 Pak N, Siegle JH, Kinney JP, Denman DJ, Blanche TJ, Boyden ES. Closed-loop, ultraprecise, automated craniotomies. Journal of Neurophysiology. 113: 3943-53. PMID 25855700 DOI: 10.1152/Jn.01055.2014  0.749
2015 Pritchett DL, Siegle JH, Deister CA, Moore CI. For things needing your attention: the role of neocortical gamma in sensory perception. Current Opinion in Neurobiology. 31: 254-63. PMID 25770854 DOI: 10.1016/j.conb.2015.02.004  0.776
2015 Siegle JH, Hale GJ, Newman JP, Voigts J. Neural ensemble communities: open-source approaches to hardware for large-scale electrophysiology. Current Opinion in Neurobiology. 32: 53-59. PMID 25528614 DOI: 10.1016/J.Conb.2014.11.004  0.75
2014 Brunetti PM, Wimmer RD, Liang L, Siegle JH, Voigts J, Wilson M, Halassa MM. Design and fabrication of ultralight weight, adjustable multi-electrode probes for electrophysiological recordings in mice. Journal of Visualized Experiments : Jove. e51675. PMID 25225749 DOI: 10.3791/51675  0.776
2014 Siegle JH, Pritchett DL, Moore CI. Gamma-range synchronization of fast-spiking interneurons can enhance detection of tactile stimuli. Nature Neuroscience. 17: 1371-9. PMID 25151266 DOI: 10.1038/nn.3797  0.68
2014 Siegle JH, Wilson MA. Enhancement of encoding and retrieval functions through theta phase-specific manipulation of hippocampus. Elife. 3: e03061. PMID 25073927 DOI: 10.7554/Elife.03061  0.485
2014 Siegle JH, Wilson MA. Author response: Enhancement of encoding and retrieval functions through theta phase-specific manipulation of hippocampus Elife. DOI: 10.7554/Elife.03061.011  0.456
2013 Voigts J, Siegle JH, Pritchett DL, Moore CI. The flexDrive: an ultra-light implant for optical control and highly parallel chronic recording of neuronal ensembles in freely moving mice. Frontiers in Systems Neuroscience. 7: 8. PMID 23717267 DOI: 10.3389/fnsys.2013.00008  0.78
2012 Carlén M, Meletis K, Siegle JH, Cardin JA, Futai K, Vierling-Claassen D, Rühlmann C, Jones SR, Deisseroth K, Sheng M, Moore CI, Tsai LH. A critical role for NMDA receptors in parvalbumin interneurons for gamma rhythm induction and behavior. Molecular Psychiatry. 17: 537-48. PMID 21468034 DOI: 10.1038/Mp.2011.31  0.691
2011 Siegle JH, Carlen M, Meletis K, Tsai LH, Moore CI, Ritt J. Chronically implanted hyperdrive for cortical recording and optogenetic control in behaving mice. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2011: 7529-32. PMID 22256080 DOI: 10.1109/IEMBS.2011.6091856  0.769
2011 Siegle JH, Moore CI. Cortical circuits: finding balance in the brain. Current Biology : Cb. 21: R956-7. PMID 22153164 DOI: 10.1016/J.Cub.2011.10.026  0.54
2011 Halassa MM, Siegle JH, Ritt JT, Ting JT, Feng G, Moore CI. Selective optical drive of thalamic reticular nucleus generates thalamic bursts and cortical spindles. Nature Neuroscience. 14: 1118-20. PMID 21785436 DOI: 10.1038/Nn.2880  0.753
2010 Knoblich U, Siegle JH, Pritchett DL, Moore CI. What do we gain from gamma? Local dynamic gain modulation drives enhanced efficacy and efficiency of signal transmission. Frontiers in Human Neuroscience. 4: 185. PMID 21151350 DOI: 10.3389/Fnhum.2010.00185  0.775
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