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Congjun Li - Publications

Affiliations: 
ARS-USDA, USA 
Area:
epigenomics
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60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Kang X, Li C, Liu S, Baldwin RL, Liu GE, Li CJ. Genome-Wide Acetylation Modification of H3K27ac in Bovine Rumen Cell Following Butyrate Exposure. Biomolecules. 13. PMID 37509173 DOI: 10.3390/biom13071137  0.321
2022 Boschiero C, Gao Y, Baldwin RL, Ma L, Li CJ, Liu GE. Butyrate Induces Modifications of the CTCF-Binding Landscape in Cattle Cells. Biomolecules. 12. PMID 36139015 DOI: 10.3390/biom12091177  0.317
2022 Gao Y, Liu S, Baldwin Vi RL, Connor EE, Cole JB, Ma L, Fang L, Li CJ, Liu GE. Functional annotation of regulatory elements in cattle genome reveals the roles of extracellular interaction and dynamic change of chromatin states in rumen development during weaning. Genomics. 114: 110296. PMID 35143887 DOI: 10.1016/j.ygeno.2022.110296  0.332
2020 Zhou Y, Liu S, Hu Y, Fang L, Gao Y, Xia H, Schroeder SG, Rosen BD, Connor EE, Li CJ, Baldwin RL, Cole JB, Van Tassell CP, Yang L, Ma L, et al. Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns. Bmc Biology. 18: 85. PMID 32631327 DOI: 10.1186/S12915-020-00793-5  0.354
2020 Lin S, Fang L, Kang X, Liu S, Liu M, Connor EE, Baldwin RL, Liu G, Li CJ. Establishment and transcriptomic analyses of a cattle rumen epithelial primary cells (REPC) culture by bulk and single-cell RNA sequencing to elucidate interactions of butyrate and rumen development. Heliyon. 6: e04112. PMID 32551379 DOI: 10.1016/J.Heliyon.2020.E04112  0.704
2020 Fang L, Cai W, Liu S, Canela-Xandri O, Gao Y, Jiang J, Rawlik K, Li B, Schroeder SG, Rosen BD, Li CJ, Sonstegard TS, Alexander LJ, Van Tassell CP, VanRaden PM, et al. Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle. Genome Research. PMID 32424068 DOI: 10.1101/Gr.250704.119  0.363
2020 Kang X, Liu S, Fang L, Lin S, Liu M, Baldwin RL, Liu GE, Li CJ. Data of epigenomic profiling of histone marks and CTCF binding sites in bovine rumen epithelial primary cells before and after butyrate treatment. Data in Brief. 28: 104983. PMID 31890818 DOI: 10.1016/J.Dib.2019.104983  0.693
2020 McLean KJ, Baldwin RL, Li C, Klotz JL, Edwards JL, McLeod KR. Synthetic Alkaloid Treatment Influences the Intestinal Epithelium and Mesenteric Adipose Transcriptome in Holstein Steers Frontiers in Veterinary Science. 7. DOI: 10.3389/Fvets.2020.00615  0.381
2019 Liu S, Fang L, Zhou Y, Santos DJA, Xiang R, Daetwyler HD, Chamberlain AJ, Cole JB, Li CJ, Yu Y, Ma L, Zhang S, Liu GE. Analyses of inter-individual variations of sperm DNA methylation and their potential implications in cattle. Bmc Genomics. 20: 888. PMID 31752687 DOI: 10.1186/S12864-019-6228-6  0.338
2019 Fang L, Liu S, Liu M, Kang X, Lin S, Li B, Connor EE, Baldwin RL, Tenesa A, Ma L, Liu GE, Li CJ. Functional annotation of the cattle genome through systematic discovery and characterization of chromatin states and butyrate-induced variations. Bmc Biology. 17: 68. PMID 31419979 DOI: 10.1186/S12915-019-0687-8  0.687
2019 Li CJ, Lin S, Ranilla-García MJ, Baldwin RL. Transcriptomic Profiling of Duodenal Epithelium Reveals Temporally Dynamic Impacts of Direct Duodenal Starch-Infusion During Dry Period of Dairy Cattle. Frontiers in Veterinary Science. 6: 214. PMID 31312641 DOI: 10.3389/Fvets.2019.00214  0.681
2019 Lin S, Zhang Z, Xie T, Hu B, Ruan Z, Zhang L, Li C, Li C, Luo W, Nie Q, Zhang X. Identification of a novel antisense RNA that regulates growth hormone receptor expression in chickens. Rna Biology. 1-13. PMID 30764709 DOI: 10.1080/15476286.2019.1572440  0.698
2019 Oh S, Li C, Baldwin RL, Song S, Liu F, Li RW. Temporal dynamics in meta longitudinal RNA-Seq data. Scientific Reports. 9: 763. PMID 30679697 DOI: 10.1038/S41598-018-37397-7  0.334
2018 Cai H, Li M, Sun X, Plath M, Li C, Lan X, Lei C, Huang Y, Bai Y, Qi X, Lin F, Chen H. Global Transcriptome Analysis During Adipogenic Differentiation and Involvement of Transthyretin Gene in Adipogenesis in Cattle. Frontiers in Genetics. 9: 463. PMID 30405687 DOI: 10.3389/Fgene.2018.00463  0.38
2018 Capuco AV, Bickhart D, Li C, Evock-Clover CM, Choudhary RK, Grossi P, Bertoni G, Trevisi E, Aiken GE, McLeod KR, Baldwin RL. Effect of consuming endophyte-infected fescue seed on transcript abundance in the mammary gland of lactating and dry cows, as assessed by RNA sequencing. Journal of Dairy Science. PMID 30146289 DOI: 10.3168/Jds.2018-14735  0.333
2018 Baldwin RL, Li RW, Jia Y, Li CJ. Transcriptomic Impacts of Rumen Epithelium Induced by Butyrate Infusion in Dairy Cattle in Dry Period. Gene Regulation and Systems Biology. 12: 1177625018774798. PMID 29785087 DOI: 10.1177/1177625018774798  0.392
2018 Lin S, Li C, Li C, Zhang X. Growth Hormone Receptor Mutations Related to Individual Dwarfism. International Journal of Molecular Sciences. 19. PMID 29748515 DOI: 10.3390/Ijms19051433  0.642
2018 Zhou Y, Connor EE, Bickhart DM, Li C, Baldwin RL, Schroeder SG, Rosen BD, Yang L, Van Tassell CP, Liu GE. Comparative whole genome DNA methylation profiling of cattle sperm and somatic tissues reveals striking hypomethylated patterns in sperm. Gigascience. PMID 29635292 DOI: 10.1093/Gigascience/Giy039  0.347
2018 Li C, Li RW, Vi RLB. Assembly and Analysis of Changes in Transcriptomes of Dairy Cattle Rumen Epithelia during Lactation and Dry Periods Agricultural Sciences. 9: 619-638. DOI: 10.4236/As.2018.95043  0.36
2017 Die JV, Baldwin RL, Rowland LJ, Li R, Oh S, Li C, Connor EE, Ranilla MJ. Selection of internal reference genes for normalization of reverse transcription quantitative polymerase chain reaction (RT-qPCR) analysis in the rumen epithelium. Plos One. 12: e0172674. PMID 28234977 DOI: 10.1371/Journal.Pone.0172674  0.355
2017 Li CJ. Flow Cytometry Analysis of Cell Cycle and Specific Cell Synchronization with Butyrate. Methods in Molecular Biology (Clifton, N.J.). 1524: 149-159. PMID 27815901 DOI: 10.1007/978-1-4939-6603-5_9  0.343
2017 Zhou Y, Li M, Hu X, Cai H, Hua L, Wang J, Huang Y, Lan X, Lei C, Liu GE, Li C, Plath M, Chen H. Characterization of candidate genes for bovine adipogenesis reveals differences of TUSC5 isoforms caused by novel alternative splicing Oncotarget. 9: 287-298. DOI: 10.18632/Oncotarget.23482  0.37
2016 Li M, Sun X, Cai H, Sun Y, Plath M, Li C, Lan X, Lei C, Lin F, Chen H, Bai Y. Long non-coding RNA ADNCR suppresses adipogenic differentiation by targeting miR-204. Biochimica Et Biophysica Acta. PMID 27156885 DOI: 10.1016/J.Bbagrm.2016.05.003  0.329
2016 Li CJ, Li RW, Baldwin RL, Blomberg le A, Wu S, Li W. Transcriptomic Sequencing Reveals a Set of Unique Genes Activated by Butyrate-Induced Histone Modification. Gene Regulation and Systems Biology. 10: 1-8. PMID 26819550 DOI: 10.4137/Grsb.S35607  0.414
2015 Wang J, Hua LS, Pan H, Zhang LZ, Li MX, Huang YZ, Li ZJ, Lan XY, Lei CZ, Li CJ, Chen H. Haplotypes in the promoter region of the CIDEC gene associated with growth traits in Nanyang cattle. Scientific Reports. 5: 12075. PMID 26189824 DOI: 10.1038/Srep12075  0.323
2015 Li RW, Wu S, Li CJ, Li W, Schroeder SG. Splice variants and regulatory networks associated with host resistance to the intestinal worm Cooperia oncophora in cattle. Veterinary Parasitology. 211: 241-50. PMID 26025321 DOI: 10.1016/J.Vetpar.2015.05.010  0.32
2014 Huang YZ, Sun JJ, Zhang LZ, Li CJ, Womack JE, Li ZJ, Lan XY, Lei CZ, Zhang CL, Zhao X, Chen H. Genome-wide DNA methylation profiles and their relationships with mRNA and the microRNA transcriptome in bovine muscle tissue (Bos taurine). Scientific Reports. 4: 6546. PMID 25306978 DOI: 10.1038/Srep06546  0.358
2014 Zhou Y, Sun J, Li C, Wang Y, Li L, Cai H, Lan X, Lei C, Zhao X, Chen H. Characterization of transcriptional complexity during adipose tissue development in bovines of different ages and sexes. Plos One. 9: e101261. PMID 24983926 DOI: 10.1371/Journal.Pone.0101261  0.355
2014 Zhang L, Jia S, Yang M, Xu Y, Li C, Sun J, Huang Y, Lan X, Lei C, Zhou Y, Zhang C, Zhao X, Chen H. Detection of copy number variations and their effects in Chinese bulls. Bmc Genomics. 15: 480. PMID 24935859 DOI: 10.1186/1471-2164-15-480  0.356
2014 Connor EE, Baldwin RL, Walker MP, Ellis SE, Li C, Kahl S, Chung H, Li RW. Transcriptional regulators transforming growth factor-β1 and estrogen-related receptor-α identified as putative mediators of calf rumen epithelial tissue development and function during weaning. Journal of Dairy Science. 97: 4193-207. PMID 24767884 DOI: 10.3168/Jds.2013-7471  0.369
2014 Huang YZ, Zhang LZ, Lai XS, Li MX, Sun YJ, Li CJ, Lan XY, Lei CZ, Zhang CL, Zhao X, Chen H. Transcription factor ZBED6 mediates IGF2 gene expression by regulating promoter activity and DNA methylation in myoblasts. Scientific Reports. 4: 4570. PMID 24691566 DOI: 10.1038/Srep04570  0.383
2014 Zhang L, Yang M, Li C, Xu Y, Sun J, Lei C, Lan X, Zhang C, Chen H. Identification and genetic effect of a variable duplication in the promoter region of the cattle ADIPOQ gene. Animal Genetics. 45: 171-179. PMID 24341634 DOI: 10.1111/Age.12112  0.341
2013 Huang YZ, Li MX, Wang J, Zhan ZY, Sun YJ, Sun JJ, Li CJ, Lan XY, Lei CZ, Zhang CL, Chen H. A 5'-regulatory region and two coding region polymorphisms modulate promoter activity and gene expression of the growth suppressor gene ZBED6 in cattle. Plos One. 8: e79744. PMID 24223190 DOI: 10.1371/Journal.Pone.0079744  0.364
2013 Shin JH, Li RW, Gao Y, Bickhart DM, Liu GE, Li W, Wu S, Li CJ. Butyrate Induced IGF2 Activation Correlated with Distinct Chromatin Signatures Due to Histone Modification. Gene Regulation and Systems Biology. 7: 57-70. PMID 23645985 DOI: 10.4137/Grsb.S11243  0.374
2013 Connor EE, Baldwin RL, Li CJ, Li RW, Chung H. Gene expression in bovine rumen epithelium during weaning identifies molecular regulators of rumen development and growth. Functional & Integrative Genomics. 13: 133-42. PMID 23314861 DOI: 10.1007/S10142-012-0308-X  0.356
2013 Li RW, Li C, Wang TT. Transcriptomic alterations in human prostate cancer cell LNCaP tumor xenograft modulated by dietary phenethyl isothiocyanate. Molecular Carcinogenesis. 52: 426-37. PMID 22308101 DOI: 10.1002/Mc.21873  0.311
2012 Wu S, Li C, Huang W, Li W, Li RW. Alternative splicing regulated by butyrate in bovine epithelial cells. Plos One. 7: e39182. PMID 22720068 DOI: 10.1371/Journal.Pone.0039182  0.389
2012 Baldwin RL, Wu S, Li W, Li C, Bequette BJ, Li RW. Quantification of Transcriptome Responses of the Rumen Epithelium to Butyrate Infusion using RNA-seq Technology. Gene Regulation and Systems Biology. 6: 67-80. PMID 22654504 DOI: 10.4137/Grsb.S9687  0.361
2012 Wu S, Li RW, Li W, Li CJ. Transcriptome characterization by RNA-seq unravels the mechanisms of butyrate-induced epigenomic regulation in bovine cells. Plos One. 7: e36940. PMID 22615851 DOI: 10.1371/Journal.Pone.0036940  0.399
2012 Baldwin RL, Li RW, Li CJ, Thomson JM, Bequette BJ. Characterization of the longissimus lumborum transcriptome response to adding propionate to the diet of growing Angus beef steers. Physiological Genomics. 44: 543-50. PMID 22454452 DOI: 10.1152/Physiolgenomics.00144.2011  0.351
2012 Shin JH, Li RW, Gao Y, Baldwin R, Li CJ. Genome-wide ChIP-seq mapping and analysis reveal butyrate-induced acetylation of H3K9 and H3K27 correlated with transcription activity in bovine cells. Functional & Integrative Genomics. 12: 119-30. PMID 22249597 DOI: 10.1007/S10142-012-0263-6  0.346
2012 Hou Y, Liu GE, Bickhart DM, Matukumalli LK, Li C, Song J, Gasbarre LC, Van Tassell CP, Sonstegard TS. Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle Functional and Integrative Genomics. 12: 81-92. PMID 21928070 DOI: 10.1007/S10142-011-0252-1  0.358
2011 Li C. Specific cell cycle synchronization with butyrate and cell cycle analysis. Methods in Molecular Biology (Clifton, N.J.). 761: 125-36. PMID 21755445 DOI: 10.1007/978-1-61779-182-6_8  0.344
2010 Connor EE, Li RW, Baldwin RL, Li C. Gene expression in the digestive tissues of ruminants and their relationships with feeding and digestive processes. Animal : An International Journal of Animal Bioscience. 4: 993-1007. PMID 22444605 DOI: 10.1017/S1751731109991285  0.399
2010 Li CJ, Li RW, Elsasser TH. Alpha-Tocopherol Modulates Transcriptional Activities that Affect Essential Biological Processes in Bovine Cells. Gene Regulation and Systems Biology. 4: 109-24. PMID 21157515 DOI: 10.4137/Grsb.S6007  0.354
2009 Liu GE, Ventura M, Cellamare A, Chen L, Cheng Z, Zhu B, Li C, Song J, Eichler EE. Analysis of recent segmental duplications in the bovine genome. Bmc Genomics. 10: 571. PMID 19951423 DOI: 10.1186/1471-2164-10-571  0.336
2009 Li RW, Li C, Elsasser TH, Liu G, Garrett WM, Gasbarre LC. Mucin biosynthesis in the bovine goblet cell induced by Cooperia oncophora infection. Veterinary Parasitology. 165: 281-9. PMID 19647371 DOI: 10.1016/J.Vetpar.2009.07.008  0.328
2009 Li CJ, Li RW, Elsasser TH, Kahl S. Lipopolysaccharide-induced early response genes in bovine peripheral blood mononuclear cells implicate GLG1/E-selectin as a key ligand-receptor interaction. Functional & Integrative Genomics. 9: 335-49. PMID 19263101 DOI: 10.1007/S10142-009-0116-0  0.351
2008 Li C, Li RW. Butyrate induced cell cycle arrest in bovine cells through targeting gene expression relevant to DNA replication apparatus. Gene Regulation and Systems Biology. 2: 113-123. PMID 19787080 DOI: 10.4137/Grsb.S465  0.418
2007 Li C, Li RW, Wang Y, Elsasser TH. Pathway analysis identifies perturbation of genetic networks induced by butyrate in a bovine kidney epithelial cell line Functional & Integrative Genomics. 7: 193-205. PMID 17186197 DOI: 10.1007/S10142-006-0043-2  0.394
2006 Li RW, Li C. Butyrate induces profound changes in gene expression related to multiple signal pathways in bovine kidney epithelial cells. Bmc Genomics. 7: 234. PMID 16972989 DOI: 10.1186/1471-2164-7-234  0.38
2004 Li CJ, Vassilev A, DePamphilis ML. Role for Cdk1 (Cdc2)/cyclin A in preventing the mammalian origin recognition complex's largest subunit (Orc1) from binding to chromatin during mitosis. Molecular and Cellular Biology. 24: 5875-86. PMID 15199143 DOI: 10.1128/Mcb.24.13.5875-5886.2004  0.607
2002 Li CJ, DePamphilis ML. Mammalian Orc1 protein is selectively released from chromatin and ubiquitinated during the S-to-M transition in the cell division cycle. Molecular and Cellular Biology. 22: 105-16. PMID 11739726 DOI: 10.1128/Mcb.22.1.105-116.2002  0.588
2000 Natale DA, Li CJ, Sun WH, DePamphilis ML. Selective instability of Orc1 protein accounts for the absence of functional origin recognition complexes during the M-G(1) transition in mammals. The Embo Journal. 19: 2728-38. PMID 10835370 DOI: 10.1093/Emboj/19.11.2728  0.593
2000 Li CJ, Bogan JA, Natale DA, DePamphilis ML. Selective activation of pre-replication complexes in vitro at specific sites in mammalian nuclei. Journal of Cell Science. 113: 887-98. PMID 10671378  0.558
1997 Li C, Englund PT. A mitochondrial DNA primase from the trypanosomatid Crithidia fasciculata. The Journal of Biological Chemistry. 272: 20787-92. PMID 9252402 DOI: 10.1074/Jbc.272.33.20787  0.579
1995 Li CJ, Hwa KY, Englund PT. A DNase from the trypanosomatid Crithidia fasciculata. Nucleic Acids Research. 23: 4426-33. PMID 7501466  0.524
1994 Li C, Goodchild J, Baril EF. DNA ligase I is associated with the 21 s complex of enzymes for DNA synthesis in HeLa cells Nucleic Acids Research. 22: 632-638. PMID 8127711 DOI: 10.1093/Nar/22.4.632  0.682
1993 Li C, Cao LG, Wang YL, Baril EF. Further purification and characterization of a multienzyme complex for DNA synthesis in human cells. Journal of Cellular Biochemistry. 53: 405-19. PMID 8300757 DOI: 10.1002/Jcb.240530418  0.686
1990 Malkas LH, Hickey RJ, Li C, Pedersen N, Baril EF. A 21S enzyme complex from HeLa cells that functions in simian virus 40 DNA replication in vitro. Biochemistry. 29: 6362-74. PMID 2169868 DOI: 10.1021/Bi00479A004  0.687
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