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Rafal Adamczak, PhD - Publications

Affiliations: 
of Informatics Nicolaus Copernicus University 
Area:
neural networks, machine learning, data mining, bioinformatics
Website:
http://www.fizyka.umk.pl/~raad/
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20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Thorman AW, Reigle J, Chutipongtanate S, Yang J, Shamsaei B, Pilarczyk M, Fazel-Najafabadi M, Adamczak R, Kouril M, Bhatnagar S, Hummel S, Niu W, Morrow AL, Czyzyk-Krzeska MF, McCullumsmith R, et al. Accelerating drug discovery and repurposing by combining transcriptional signature connectivity with docking. Science Advances. 10: eadj3010. PMID 39213358 DOI: 10.1126/sciadv.adj3010  0.514
2024 Bischoff ME, Shamsaei B, Yang J, Secic D, Vemuri B, Reisz JA, D'Alessandro A, Bartolacci C, Adamczak R, Schmidt L, Wang J, Martines A, Biesiada J, Vest KE, Scaglioni PP, et al. Copper drives remodeling of metabolic state and progression of clear cell renal cell carcinoma. Biorxiv : the Preprint Server For Biology. PMID 38293110 DOI: 10.1101/2024.01.16.575895  0.46
2020 Thorman AW, Reigle J, Chutipongtanate S, Shamsaei B, Pilarczyk M, Fazel-Najafabadi M, Adamczak R, Kouril M, Medvedovic M, Meller J. Connectivity Enhanced Structure Activity Relationship (ceSAR): A Novel Approach to Increase Accuracy and Speed of Virtual Drug Discovery The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.05660  0.554
2016 Adamczak R, Meller J. UQlust: combining profile hashing with linear-time ranking for efficient clustering and analysis of big macromolecular data. Bmc Bioinformatics. 17: 546. PMID 28031034 DOI: 10.1186/S12859-016-1381-2  0.582
2011 Phatak M, Adamczak R, Cao B, Wagner M, Meller J. Solvent and lipid accessibility prediction as a basis for model quality assessment in soluble and membrane proteins. Current Protein & Peptide Science. 12: 563-73. PMID 21787302 DOI: 10.2174/138920311796957603  0.532
2011 Adamczak R, Pillardy J, Vallat BK, Meller J. Fast geometric consensus approach for protein model quality assessment. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1807-18. PMID 21244273 DOI: 10.1089/Cmb.2010.0170  0.494
2010 Swaminathan K, Adamczak R, Porollo A, Meller J. Enhanced prediction of conformational flexibility and phosphorylation in proteins. Advances in Experimental Medicine and Biology. 680: 307-19. PMID 20865514 DOI: 10.1007/978-1-4419-5913-3_35  0.547
2007 Cushion MT, Smulian AG, Slaven BE, Sesterhenn T, Arnold J, Staben C, Porollo A, Adamczak R, Meller J. Transcriptome of Pneumocystis carinii during fulminate infection: carbohydrate metabolism and the concept of a compatible parasite. Plos One. 2: e423. PMID 17487271 DOI: 10.1371/Journal.Pone.0000423  0.593
2006 Cao B, Porollo A, Adamczak R, Jarrell M, Meller J. Enhanced recognition of protein transmembrane domains with prediction-based structural profiles. Bioinformatics (Oxford, England). 22: 303-9. PMID 16293670 DOI: 10.1093/Bioinformatics/Bti784  0.524
2005 Wagner M, Adamczak R, Porollo A, Meller J. Linear regression models for solvent accessibility prediction in proteins. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 12: 355-69. PMID 15857247 DOI: 10.1089/Cmb.2005.12.355  0.675
2005 Adamczak R, Porollo A, Meller J. Combining prediction of secondary structure and solvent accessibility in proteins. Proteins. 59: 467-75. PMID 15768403 DOI: 10.1002/Prot.20441  0.673
2004 Adamczak R, Porollo A, Meller J. Accurate prediction of solvent accessibility using neural networks-based regression. Proteins. 56: 753-67. PMID 15281128 DOI: 10.1002/Prot.20176  0.697
2004 Porollo AA, Adamczak R, Meller J. POLYVIEW: a flexible visualization tool for structural and functional annotations of proteins. Bioinformatics (Oxford, England). 20: 2460-2. PMID 15073023 DOI: 10.1093/Bioinformatics/Bth248  0.638
2004 Adamczak R, Meller J. On the transferability of folding and threading potentials and sequence-independent filters for protein folding simulations Molecular Physics. 102: 1291-1305. DOI: 10.1080/00268970410001728636  0.627
2001 Duch W, Adamczak R, Grabczewski K. A new methodology of extraction, optimization and application of crisp and fuzzy logical rules. Ieee Transactions On Neural Networks / a Publication of the Ieee Neural Networks Council. 12: 277-306. PMID 18244384 DOI: 10.1109/72.914524  0.743
2000 Duch W, Jankowski N, Gra̧bczewski K, Adamczak R. Optimization and interpretation of rule-based classifiers Advances in Soft Computing. 4: 1-13. DOI: 10.1007/978-3-7908-1846-8_1  0.698
2000 Duch W, Adamczak R, Gra̧bczewski K, Jankowski N. Neural methods of knowledge extraction Control and Cybernetics. 29: 997-1017.  0.558
1999 Duch W, Adamczak R, Diercksen GH. Neural Processing Letters. 10: 201-210. DOI: 10.1023/A:1018728407584  0.508
1999 Duch W, Adamczak R, Grabczewski K. Optimization of logical rules derived by neural procedures Proceedings of the International Joint Conference On Neural Networks. 1: 669-674.  0.715
1998 Duch W, Adamczak R, Grąbczewski K. Neural Processing Letters. 7: 211-219. DOI: 10.1023/A:1009670302979  0.725
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