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Ming-Daw Tsai - Publications

Affiliations: 
Ohio State University, Columbus, Columbus, OH 
Area:
Protein Structure-Function, NMR, Enzyme Mechanism
Website:
http://chemistry.osu.edu/faculty/tsai

148 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Jiang HK, Wang YH, Weng JH, Kurkute P, Li CL, Lee MN, Chen PJ, Tseng HW, Tsai MD, Wang YS. Probing the active site of deubiquitinase USP30 with non-canonical tryptophan analogues. Biochemistry. PMID 32484330 DOI: 10.1021/Acs.Biochem.0C00307  0.351
2018 Franz S, Ignatz E, Wenzel S, Zielosko H, Putu EPGN, Maestre-Reyna M, Tsai MD, Yamamoto J, Mittag M, Essen LO. Structure of the bifunctional cryptochrome aCRY from Chlamydomonas reinhardtii. Nucleic Acids Research. PMID 30032195 DOI: 10.1093/Nar/Gky621  0.363
2018 Lin JS, Pissaridou P, Wu HH, Tsai MD, Filloux A, Lai EM. TagF-mediated repression of bacterial type VI secretion systems involves a direct interaction with the cytoplasmic protein Fha. The Journal of Biological Chemistry. PMID 29599293 DOI: 10.1074/Jbc.Ra117.001618  0.332
2017 Chen ES, Weng JH, Chen YH, Wang SC, Liu XX, Huang WC, Matsui T, Kawano Y, Liao JH, Lim LH, Huang KF, Wu WJ, Tsai MD. Phospho-priming Confers Functionally Relevant Specificities for Rad53 Kinase Autophosphorylation. Biochemistry. PMID 28858528 DOI: 10.1021/Acs.Biochem.7B00689  0.358
2016 Liu MS, Tsai HY, Liu XX, Ho MC, Wu WJ, Tsai MD. Structural Mechanism for the Fidelity Modulation of DNA Polymerase λ. Journal of the American Chemical Society. PMID 26836966 DOI: 10.1021/Jacs.5B13368  0.429
2015 Lee WC, Lin WL, Matsui T, Chen ES, Wei TW, Lin WH, Hu H, Zheng YG, Tsai MD, Ho MC. PROTEIN ARGININE METHYLTRANSFERASE 8: tetrameric structure and protein substrate specificity. Biochemistry. PMID 26529540 DOI: 10.1021/Acs.Biochem.5B00995  0.373
2015 Weng JH, Hsieh YC, Huang CF, Wei TW, Lim LH, Chen YH, Ho MR, Wang I, Huang KF, Chen CJ, Tsai MD. Uncovering the mechanism of FHA domain-mediated TIFA oligomerization that plays a central role in immune responses. Biochemistry. PMID 26389808 DOI: 10.1021/Acs.Biochem.5B00500  0.568
2015 Pan WA, Tsai HY, Wang SC, Hsiao M, Wu PY, Tsai MD. The RNA recognition motif of NIFK is required for rRNA maturation during cell cycle progression. Rna Biology. 12: 255-67. PMID 25826659 DOI: 10.1080/15476286.2015.1017221  0.322
2014 Tsai MD. How DNA polymerases catalyze DNA replication, repair, and mutation. Biochemistry. 53: 2749-51. PMID 24716436 DOI: 10.1021/Bi500417M  0.328
2014 Lin JS, Wu HH, Hsu PH, Ma LS, Pang YY, Tsai MD, Lai EM. Fha interaction with phosphothreonine of TssL activates type VI secretion in Agrobacterium tumefaciens. Plos Pathogens. 10: e1003991. PMID 24626341 DOI: 10.1371/Journal.Ppat.1003991  0.348
2014 Wu WJ, Su MI, Wu JL, Kumar S, Lim LH, Wang CW, Nelissen FH, Chen MC, Doreleijers JF, Wijmenga SS, Tsai MD. How a low-fidelity DNA polymerase chooses non-Watson-Crick from Watson-Crick incorporation. Journal of the American Chemical Society. 136: 4927-37. PMID 24617852 DOI: 10.1021/ja4102375  0.618
2014 Chen ES, Hoch NC, Wang SC, Pellicioli A, Heierhorst J, Tsai MD. Use of quantitative mass spectrometric analysis to elucidate the mechanisms of phospho-priming and auto-activation of the checkpoint kinase Rad53 in vivo. Molecular & Cellular Proteomics : McP. 13: 551-65. PMID 24302356 DOI: 10.1074/Mcp.M113.034058  0.349
2013 Yang FC, Lin YH, Chen WH, Huang JY, Chang HY, Su SH, Wang HT, Chiang CY, Hsu PH, Tsai MD, Tan BC, Lee SC. Interaction between salt-inducible kinase 2 (SIK2) and p97/valosin-containing protein (VCP) regulates endoplasmic reticulum (ER)-associated protein degradation in mammalian cells. The Journal of Biological Chemistry. 288: 33861-72. PMID 24129571 DOI: 10.1074/Jbc.M113.492199  0.345
2013 Hoch NC, Chen ES, Buckland R, Wang SC, Fazio A, Hammet A, Pellicioli A, Chabes A, Tsai MD, Heierhorst J. Molecular basis of the essential s phase function of the rad53 checkpoint kinase. Molecular and Cellular Biology. 33: 3202-13. PMID 23754745 DOI: 10.1128/Mcb.00474-13  0.36
2013 Poi MJ, Knobloch TJ, Yuan C, Tsai MD, Weghorst CM, Li J. Evidence that P12, a specific variant of P16(INK4A), plays a suppressive role in human pancreatic carcinogenesis. Biochemical and Biophysical Research Communications. 436: 217-22. PMID 23727582 DOI: 10.1016/J.Bbrc.2013.05.078  0.589
2013 Chiang PY, Shen YF, Su YL, Kao CH, Lin NY, Hsu PH, Tsai MD, Wang SC, Chang GD, Lee SC, Chang CJ. Phosphorylation of mRNA decapping protein Dcp1a by the ERK signaling pathway during early differentiation of 3T3-L1 preadipocytes. Plos One. 8: e61697. PMID 23637887 DOI: 10.1371/Journal.Pone.0061697  0.321
2013 Yang FC, Tan BC, Chen WH, Lin YH, Huang JY, Chang HY, Sun HY, Hsu PH, Liou GG, Shen J, Chang CJ, Han CC, Tsai MD, Lee SC. Reversible acetylation regulates salt-inducible kinase (SIK2) and its function in autophagy. The Journal of Biological Chemistry. 288: 6227-37. PMID 23322770 DOI: 10.1074/Jbc.M112.431239  0.302
2012 Wei PC, Hsieh YH, Su MI, Jiang X, Hsu PH, Lo WT, Weng JY, Jeng YM, Wang JM, Chen PL, Chang YC, Lee KF, Tsai MD, Shew JY, Lee WH. Loss of the oxidative stress sensor NPGPx compromises GRP78 chaperone activity and induces systemic disease. Molecular Cell. 48: 747-59. PMID 23123197 DOI: 10.1016/j.molcel.2012.10.007  0.478
2012 Lin TL, Yang FL, Yang AS, Peng HP, Li TL, Tsai MD, Wu SH, Wang JT. Amino acid substitutions of MagA in Klebsiella pneumoniae affect the biosynthesis of the capsular polysaccharide. Plos One. 7: e46783. PMID 23118860 DOI: 10.1371/Journal.Pone.0046783  0.301
2012 Huang CC, Weng JH, Wei TY, Wu PY, Hsu PH, Chen YH, Wang SC, Qin D, Hung CC, Chen ST, Wang AH, Shyy JY, Tsai MD. Intermolecular binding between TIFA-FHA and TIFA-pT mediates tumor necrosis factor alpha stimulation and NF-κB activation. Molecular and Cellular Biology. 32: 2664-73. PMID 22566686 DOI: 10.1128/Mcb.00438-12  0.559
2012 Wu HH, Wu PY, Huang KF, Kao YY, Tsai MD. Structural delineation of MDC1-FHA domain binding with CHK2-pThr68. Biochemistry. 51: 575-7. PMID 22211259 DOI: 10.1021/Bi201709W  0.379
2011 Balbo PB, Wang EC, Tsai MD. Kinetic mechanism of active site assembly and chemical catalysis of DNA polymerase β. Biochemistry. 50: 9865-75. PMID 22010960 DOI: 10.1021/Bi200954R  0.367
2011 Li J, Poi MJ, Tsai MD. Regulatory mechanisms of tumor suppressor P16(INK4A) and their relevance to cancer. Biochemistry. 50: 5566-82. PMID 21619050 DOI: 10.1021/Bi200642E  0.592
2011 Chan HC, Huang YT, Lyu SY, Huang CJ, Li YS, Liu YC, Chou CC, Tsai MD, Li TL. Regioselective deacetylation based on teicoplanin-complexed Orf2* crystal structures. Molecular Biosystems. 7: 1224-31. PMID 21267472 DOI: 10.1039/C0Mb00320D  0.306
2010 Matsumura Y, Shinjo M, Mahajan A, Tsai MD, Kihara H. alpha-Helical burst on the folding pathway of FHA domains from Rad53 and Ki67. Biochimie. 92: 1031-9. PMID 20466033 DOI: 10.1016/J.Biochi.2010.05.001  0.32
2010 Guo Y, Yuan C, Tian F, Huang K, Weghorst CM, Tsai MD, Li J. Contributions of conserved TPLH tetrapeptides to the conformational stability of ankyrin repeat proteins. Journal of Molecular Biology. 399: 168-81. PMID 20398677 DOI: 10.1016/J.Jmb.2010.04.010  0.611
2010 Bai C, Zhao L, Tsai MD, Bruzik KS. Unique catalytic mechanism of phosphatidylinositol-specific phospholipase C from Streptomyces antibioticus. Journal of the American Chemical Society. 132: 1210-1. PMID 20052980 DOI: 10.1021/Ja908285H  0.767
2010 Yang L, Tu S, Ren C, Bulloch EM, Liao CL, Tsai MD, Freitas MA. Unambiguous determination of isobaric histone modifications by reversed-phase retention time and high-mass accuracy. Analytical Biochemistry. 396: 13-22. PMID 19699711 DOI: 10.1016/J.Ab.2009.08.027  0.492
2010 Mihai C, Yue X, Zhao L, Kravchuk A, Tsai MD, Bruzik KS. Nonhydrolyzable analogs of phosphatidylinositol as ligands of phospholipases C New Journal of Chemistry. 34: 925-933. DOI: 10.1039/B9Nj00629J  0.787
2009 Bai C, Zhao L, Rebecchi M, Tsai MD, Bruzik KS. Trans-cyclization of phosphatidylinositol catalyzed by phospholipase C from Streptomyces antibioticus. Journal of the American Chemical Society. 131: 8362-3. PMID 19492832 DOI: 10.1021/Ja902326U  0.747
2009 Guo Y, Mahajan A, Yuan C, Joo SH, Weghorst CM, Tsai MD, Li J. Comparisons of the conformational stability of cyclin-dependent kinase (CDK) 4-interacting ankyrin repeat (AR) proteins. Biochemistry. 48: 4050-62. PMID 19320462 DOI: 10.1021/Bi802247P  0.621
2009 Bakhtina M, Roettger MP, Tsai MD. Contribution of the reverse rate of the conformational step to polymerase beta fidelity. Biochemistry. 48: 3197-208. PMID 19231836 DOI: 10.1021/Bi802119F  0.367
2009 Chen Z, Peng IC, Sun W, Su MI, Hsu PH, Fu Y, Zhu Y, DeFea K, Pan S, Tsai MD, Shyy JY. AMP-activated protein kinase functionally phosphorylates endothelial nitric oxide synthase Ser633. Circulation Research. 104: 496-505. PMID 19131647 DOI: 10.1161/Circresaha.108.187567  0.486
2008 Mahajan A, Yuan C, Lee H, Chen ES, Wu PY, Tsai MD. Structure and function of the phosphothreonine-specific FHA domain. Science Signaling. 1: re12. PMID 19109241 DOI: 10.1126/Scisignal.151Re12  0.373
2008 Roettger MP, Bakhtina M, Tsai MD. Mismatched and matched dNTP incorporation by DNA polymerase beta proceed via analogous kinetic pathways. Biochemistry. 47: 9718-27. PMID 18717589 DOI: 10.1021/Bi800689D  0.329
2008 Kumar S, Bakhtina M, Tsai MD. Altered order of substrate binding by DNA polymerase X from African Swine Fever virus. Biochemistry. 47: 7875-87. PMID 18598057 DOI: 10.1021/Bi800731M  0.484
2008 Lee H, Yuan C, Hammet A, Mahajan A, Chen ES, Wu MR, Su MI, Heierhorst J, Tsai MD. Diphosphothreonine-specific interaction between an SQ/TQ cluster and an FHA domain in the Rad53-Dun1 kinase cascade. Molecular Cell. 30: 767-78. PMID 18570878 DOI: 10.1016/J.Molcel.2008.05.013  0.618
2008 Tang KH, Tsai MD. Structure and function of 2:1 DNA polymerase.DNA complexes. Journal of Cellular Physiology. 216: 315-20. PMID 18393274 DOI: 10.1002/Jcp.21458  0.359
2008 Tang KH, Niebuhr M, Tung CS, Chan HC, Chou CC, Tsai MD. Mismatched dNTP incorporation by DNA polymerase beta does not proceed via globally different conformational pathways. Nucleic Acids Research. 36: 2948-57. PMID 18385153 DOI: 10.1093/Nar/Gkn138  0.392
2008 Tu S, Teng YC, Yuan C, Wu YT, Chan MY, Cheng AN, Lin PH, Juan LJ, Tsai MD. The ARID domain of the H3K4 demethylase RBP2 binds to a DNA CCGCCC motif. Nature Structural & Molecular Biology. 15: 419-21. PMID 18270511 DOI: 10.1038/nsmb.1400  0.534
2008 Tang KH, Niebuhr M, Aulabaugh A, Tsai MD. Solution structures of 2 : 1 and 1 : 1 DNA polymerase-DNA complexes probed by ultracentrifugation and small-angle X-ray scattering. Nucleic Acids Research. 36: 849-60. PMID 18084022 DOI: 10.1093/Nar/Gkm1101  0.376
2007 Vadysirisack DD, Chen ES, Zhang Z, Tsai MD, Chang GD, Jhiang SM. Identification of in vivo phosphorylation sites and their functional significance in the sodium iodide symporter. The Journal of Biological Chemistry. 282: 36820-8. PMID 17913707 DOI: 10.1074/Jbc.M706817200  0.315
2007 Mahajan A, Guo Y, Yuan C, Weghorst CM, Tsai MD, Li J. Dissection of protein-protein interaction and CDK4 inhibition in the oncogenic versus tumor suppressing functions of gankyrin and P16. Journal of Molecular Biology. 373: 990-1005. PMID 17881001 DOI: 10.1016/J.Jmb.2007.08.038  0.643
2007 Bakhtina M, Roettger MP, Kumar S, Tsai MD. A unified kinetic mechanism applicable to multiple DNA polymerases. Biochemistry. 46: 5463-72. PMID 17419590 DOI: 10.1021/Bi700084W  0.466
2007 Wang Y, Lamarche BJ, Tsai MD. Human DNA ligase IV and the ligase IV/XRCC4 complex: analysis of nick ligation fidelity. Biochemistry. 46: 4962-76. PMID 17407264 DOI: 10.1021/Bi0621516  0.36
2007 Tu S, Bulloch EM, Yang L, Ren C, Huang WC, Hsu PH, Chen CH, Liao CL, Yu HM, Lo WS, Freitas MA, Tsai MD. Identification of histone demethylases in Saccharomyces cerevisiae. The Journal of Biological Chemistry. 282: 14262-71. PMID 17369256 DOI: 10.1074/Jbc.M609900200  0.507
2007 Kumar S, Lamarche BJ, Tsai MD. Use of damaged DNA and dNTP substrates by the error-prone DNA polymerase X from African swine fever virus. Biochemistry. 46: 3814-25. PMID 17335287 DOI: 10.1021/Bi061501L  0.451
2006 Li J, Mahajan A, Tsai MD. Ankyrin repeat: a unique motif mediating protein-protein interactions. Biochemistry. 45: 15168-78. PMID 17176038 DOI: 10.1021/Bi062188Q  0.57
2006 Lamarche BJ, Kumar S, Tsai MD. ASFV DNA polymerse X is extremely error-prone under diverse assay conditions and within multiple DNA sequence contexts. Biochemistry. 45: 14826-33. PMID 17144676 DOI: 10.1021/Bi0613325  0.451
2006 Lamarche BJ, Tsai MD. Contributions of an endonuclease IV homologue to DNA repair in the African swine fever virus. Biochemistry. 45: 2790-803. PMID 16503634 DOI: 10.1021/Bi051772G  0.371
2006 Showalter AK, Lamarche BJ, Bakhtina M, Su MI, Tang KH, Tsai MD. Mechanistic comparison of high-fidelity and error-prone DNA polymerases and ligases involved in DNA repair. Chemical Reviews. 106: 340-60. PMID 16464009 DOI: 10.1021/Cr040487K  0.77
2005 Byeon IJL, Li H, Song H, Gronenborn AM, Tsai MD. Sequential phosphorylation and multisite interactions characterize specific target recognition by the FHA domain of Ki67 Nature Structural and Molecular Biology. 12: 987-993. PMID 16244663 DOI: 10.1038/Nsmb1008  0.669
2005 Li J, Muscarella P, Joo SH, Knobloch TJ, Melvin WS, Weghorst CM, Tsai MD. Dissection of CDK4-binding and transactivation activities of p34(SEI-1) and comparison between functions of p34(SEI-1) and p16(INK4A). Biochemistry. 44: 13246-56. PMID 16201750 DOI: 10.1021/Bi0504658  0.606
2005 Apiyo D, Zhao L, Tsai MD, Selby TL. X-ray structure of the R69D phosphatidylinositol-specific phospholipase C enzyme: insight into the role of calcium and surrounding amino acids in active site geometry and catalysis. Biochemistry. 44: 9980-9. PMID 16042375 DOI: 10.1021/Bi047896V  0.369
2005 Lamarche BJ, Showalter AK, Tsai MD. An error-prone viral DNA ligase. Biochemistry. 44: 8408-17. PMID 15938630 DOI: 10.1021/bi047706g  0.787
2005 Bakhtina M, Lee S, Wang Y, Dunlap C, Lamarche B, Tsai MD. Use of viscogens, dNTPalphaS, and rhodium(III) as probes in stopped-flow experiments to obtain new evidence for the mechanism of catalysis by DNA polymerase beta. Biochemistry. 44: 5177-87. PMID 15794655 DOI: 10.1021/Bi047664W  0.621
2005 Yuan C, Tu S, Gelb MH, Tsai MD. Unusual four-bond secondary H/D isotope effect supports a short-strong hydrogen bond between phospholipase A2 and a transition state analogue inhibitor. Biochemistry. 44: 4748-54. PMID 15779901 DOI: 10.1021/Bi047503S  0.438
2004 Yuan C, Li J, Mahajan A, Poi MJ, Byeon IJ, Tsai MD. Solution structure of the human oncogenic protein gankyrin containing seven ankyrin repeats and analysis of its structure--function relationship. Biochemistry. 43: 12152-61. PMID 15379554 DOI: 10.1021/Bi049116O  0.613
2004 O'Maille PE, Tsai MD, Greenhagen BT, Chappell J, Noel JP. Gene library synthesis by structure-based combinatorial protein engineering. Methods in Enzymology. 388: 75-91. PMID 15289063 DOI: 10.1016/S0076-6879(04)88008-X  0.745
2004 Zhao L, Liao H, Tsai MD. The catalytic role of aspartate in a short strong hydrogen bond of the Asp274-His32 catalytic dyad in phosphatidylinositol-specific phospholipase C can be substituted by a chloride ion. The Journal of Biological Chemistry. 279: 31995-2000. PMID 15155721 DOI: 10.1074/Jbc.M404184200  0.327
2004 Li J, Melvin WS, Tsai MD, Muscarella P. The nuclear protein p34SEI-1 regulates the kinase activity of cyclin-dependent kinase 4 in a concentration-dependent manner. Biochemistry. 43: 4394-9. PMID 15065884 DOI: 10.1021/Bi035601S  0.587
2004 Yongkiettrakul S, Byeon IJ, Tsai MD. The ligand specificity of yeast Rad53 FHA domains at the +3 position is determined by nonconserved residues. Biochemistry. 43: 3862-9. PMID 15049693 DOI: 10.1021/Bi036195F  0.737
2004 Pike BL, Yongkiettrakul S, Tsai MD, Heierhorst J. Mdt1, a novel Rad53 FHA1 domain-interacting protein, modulates DNA damage tolerance and G(2)/M cell cycle progression in Saccharomyces cerevisiae. Molecular and Cellular Biology. 24: 2779-88. PMID 15024067 DOI: 10.1128/Mcb.24.7.2779-2788.2004  0.742
2004 Li H, Byeon IJ, Ju Y, Tsai MD. Structure of human Ki67 FHA domain and its binding to a phosphoprotein fragment from hNIFK reveal unique recognition sites and new views to the structural basis of FHA domain functions. Journal of Molecular Biology. 335: 371-81. PMID 14659764 DOI: 10.1016/J.Jmb.2003.10.032  0.553
2004 Li J, Weghorst CM, Tsutsumi M, Poi MJ, Knobloch TJ, Casto BC, Melvin WS, Tsai MD, Muscarella P. Frequent p16INK4A/CDKN2A alterations in chemically induced Syrian golden hamster pancreatic tumors. Carcinogenesis. 25: 263-8. PMID 14604895 DOI: 10.1093/Carcin/Bgh007  0.591
2003 Qin D, Lee H, Yuan C, Ju Y, Tsai MD. Identification of potential binding sites for the FHA domain of human Chk2 by in vitro binding studies. Biochemical and Biophysical Research Communications. 311: 803-8. PMID 14623252 DOI: 10.1016/J.Bbrc.2003.10.076  0.578
2003 Li J, Joo SH, Tsai MD. An NF-kappaB-specific inhibitor, IkappaBalpha, binds to and inhibits cyclin-dependent kinase 4. Biochemistry. 42: 13476-83. PMID 14621993 DOI: 10.1021/Bi035390R  0.626
2003 Pike BL, Yongkiettrakul S, Tsai MD, Heierhorst J. Diverse but overlapping functions of the two forkhead-associated (FHA) domains in Rad53 checkpoint kinase activation. The Journal of Biological Chemistry. 278: 30421-4. PMID 12805372 DOI: 10.1074/Jbc.C300227200  0.733
2003 Poi MJ, Tomaszewski JW, Yuan C, Dunlap CA, Andersen NH, Gelb MH, Tsai MD. A low-barrier hydrogen bond between histidine of secreted phospholipase A2 and a transition state analog inhibitor. Journal of Molecular Biology. 329: 997-1009. PMID 12798689 DOI: 10.1016/S0022-2836(03)00512-6  0.545
2003 Li J, Li H, Tsai MD. Direct binding of the N-terminus of HTLV-1 tax oncoprotein to cyclin-dependent kinase 4 is a dominant path to stimulate the kinase activity. Biochemistry. 42: 6921-8. PMID 12779347 DOI: 10.1021/Bi034369N  0.702
2003 Li J, Qin D, Knobloch TJ, Tsai MD, Weghorst CM, Melvin WS, Muscarella P. Expression and characterization of Syrian golden hamster p16, a homologue of human tumor suppressor p16 INK4A. Biochemical and Biophysical Research Communications. 304: 241-7. PMID 12711305 DOI: 10.1016/S0006-291X(03)00577-1  0.661
2003 Mihai C, Kravchuk AV, Tsai MD, Bruzik KS. Application of Brønsted-type LFER in the study of the phospholipase C mechanism. Journal of the American Chemical Society. 125: 3236-42. PMID 12630878 DOI: 10.1021/Ja029362S  0.787
2003 Kravchuk AV, Zhao L, Bruzik KS, Tsai MD. Engineering a catalytic metal binding site into a calcium-independent phosphatidylinositol-specific phospholipase C leads to enhanced stereoselectivity. Biochemistry. 42: 2422-30. PMID 12600209 DOI: 10.1021/Bi0271953  0.571
2003 Zhao L, Liu Y, Bruzik KS, Tsai MD. A novel calcium-dependent bacterial phosphatidylinositol-specific phospholipase C displaying unprecedented magnitudes of thio effect, inverse thio effect, and stereoselectivity. Journal of the American Chemical Society. 125: 22-3. PMID 12515492 DOI: 10.1021/Ja029019N  0.567
2002 Rajakannan V, Yogavel M, Poi MJ, Jeyaprakash AA, Jeyakanthan J, Velmurugan D, Tsai MD, Sekar K. Observation of additional calcium ion in the crystal structure of the triple mutant K56,120,121M of bovine pancreatic phospholipase A2. Journal of Molecular Biology. 324: 755-62. PMID 12460575 DOI: 10.1016/S0022-2836(02)01132-4  0.339
2002 Dunlap CA, Tsai MD. Use of 2-aminopurine and tryptophan fluorescence as probes in kinetic analyses of DNA polymerase beta. Biochemistry. 41: 11226-35. PMID 12220188 DOI: 10.1021/Bi025837G  0.594
2002 O'Maille PE, Bakhtina M, Tsai MD. Structure-based combinatorial protein engineering (SCOPE). Journal of Molecular Biology. 321: 677-91. PMID 12206782 DOI: 10.1016/S0022-2836(02)00675-7  0.722
2002 Showalter AK, Tsai MD. A reexamination of the nucleotide incorporation fidelity of DNA polymerases. Biochemistry. 41: 10571-6. PMID 12186540 DOI: 10.1021/Bi026021I  0.792
2002 Li J, Tsai MD. Novel insights into the INK4-CDK4/6-Rb pathway: counter action of gankyrin against INK4 proteins regulates the CDK4-mediated phosphorylation of Rb. Biochemistry. 41: 3977-83. PMID 11900540 DOI: 10.1021/bi011550s  0.599
2001 Byeon IJ, Yongkiettrakul S, Tsai MD. Solution structure of the yeast Rad53 FHA2 complexed with a phosphothreonine peptide pTXXL: comparison with the structures of FHA2-pYXL and FHA1-pTXXD complexes. Journal of Molecular Biology. 314: 577-88. PMID 11846568 DOI: 10.1006/Jmbi.2001.5141  0.717
2001 Yuan C, Yongkiettrakul S, Byeon IJ, Zhou S, Tsai MD. Solution structures of two FHA1-phosphothreonine peptide complexes provide insight into the structural basis of the ligand specificity of FHA1 from yeast Rad53. Journal of Molecular Biology. 314: 563-75. PMID 11846567 DOI: 10.1006/Jmbi.2001.5140  0.713
2001 Showalter AK, Byeon IJ, Su MI, Tsai MD. Solution structure of a viral DNA polymerase X and evidence for a mutagenic function. Nature Structural Biology. 8: 942-6. PMID 11685239 DOI: 10.1038/Nsb1101-942  0.784
2001 Liu J, Tsai M. DNA polymerase beta: pre-steady-state kinetic analyses of dATP alpha S stereoselectivity and alteration of the stereoselectivity by various metal ions and by site-directed mutagenesis. Biochemistry. 40: 9014-9022. PMID 11467964 DOI: 10.1021/Bi010646J  0.347
2001 Showalter AK, Tsai MD. A DNA polymerase with specificity for five base pairs. Journal of the American Chemical Society. 123: 1776-7. PMID 11456786 DOI: 10.1021/ja005758x  0.779
2001 Kravchuk AV, Zhao L, Kubiak RJ, Bruzik KS, Tsai MD. Mechanism of phosphatidylinositol-specific phospholipase C: origin of unusually high nonbridging thio effects. Biochemistry. 40: 5433-9. PMID 11331007 DOI: 10.1021/Bi002372Q  0.61
2001 Kubiak RJ, Yue X, Hondal RJ, Mihai C, Tsai MD, Bruzik KS. Involvement of the Arg-Asp-His catalytic triad in enzymatic cleavage of the phosphodiester bond. Biochemistry. 40: 5422-32. PMID 11331006 DOI: 10.1021/Bi002371Y  0.795
2001 Arndt JW, Gong W, Zhong X, Showalter AK, Liu J, Dunlap CA, Lin Z, Paxson C, Tsai MD, Chan MK. Insight into the catalytic mechanism of DNA polymerase beta: structures of intermediate complexes. Biochemistry. 40: 5368-75. PMID 11330999 DOI: 10.1021/Bi002176J  0.789
2001 Poi MJ, Yen T, Li J, Song H, Lang JC, Schuller DE, Pearl DK, Casto BC, Tsai MD, Weghorst CM. Somatic INK4a-ARF locus mutations: a significant mechanism of gene inactivation in squamous cell carcinomas of the head and neck. Molecular Carcinogenesis. 30: 26-36. PMID 11255261 DOI: 10.1002/1098-2744(200101)30:1<26::Aid-Mc1010>3.0.Co;2-E  0.671
2000 Liao H, Yuan C, Su MI, Yongkiettrakul S, Qin D, Li H, Byeon IJ, Pei D, Tsai MD. Structure of the FHA1 domain of yeast Rad53 and identification of binding sites for both FHA1 and its target protein Rad9. Journal of Molecular Biology. 304: 941-51. PMID 11124038 DOI: 10.1006/Jmbi.2000.4291  0.789
2000 Kraynov VS, Showalter AK, Liu J, Zhong X, Tsai MD. DNA polymerase beta: contributions of template-positioning and dNTP triphosphate-binding residues to catalysis and fidelity. Biochemistry. 39: 16008-15. PMID 11123928 DOI: 10.1021/Bi0008480  0.799
2000 Yu BZ, Poi MJ, Ramagopal UA, Jain R, Ramakumar S, Berg OG, Tsai MD, Sekar K, Jain MK. Structural basis of the anionic interface preference and kcat* activation of pancreatic phospholipase A2. Biochemistry. 39: 12312-23. PMID 11015210 DOI: 10.1021/Bi000740K  0.359
2000 Wang P, Byeon IJ, Liao H, Beebe KD, Yongkiettrakul S, Pei D, Tsai MD. II. Structure and specificity of the interaction between the FHA2 domain of Rad53 and phosphotyrosyl peptides. Journal of Molecular Biology. 302: 927-40. PMID 10993733 DOI: 10.1006/Jmbi.2000.4095  0.725
2000 Hengge AC, Bruzik KS, Tobin AE, Cleland WW, Tsai MD. Kinetic Isotope Effects and Stereochemical Studies on a Ribonuclease Model: Hydrolysis Reactions of Uridine 3'-Nitrophenyl Phosphate. Bioorganic Chemistry. 28: 119-133. PMID 10915550 DOI: 10.1006/Bioo.2000.1170  0.586
2000 Yuan C, Selby TL, Li J, Byeon IJ, Tsai MD. Tumor suppressor INK4: refinement of p16INK4A structure and determination of p15INK4B structure by comparative modeling and NMR data. Protein Science : a Publication of the Protein Society. 9: 1120-8. PMID 10892805 DOI: 10.1110/Ps.9.6.1120  0.62
2000 Li J, Poi MJ, Qin D, Selby TL, Byeon IJ, Tsai MD. Tumor suppressor INK4: quantitative structure-function analyses of p18INK4C as an inhibitor of cyclin-dependent kinase 4. Biochemistry. 39: 649-57. PMID 10651629 DOI: 10.1021/Bi991281U  0.718
1999 Liao H, Byeon IL, Tsai M. Structure and function of a new phosphopeptide-binding domain containing the FHA2 of Rad53. Journal of Molecular Biology. 294: 1041-1049. PMID 10588905 DOI: 10.1006/Jmbi.1999.3313  0.399
1999 Yuan C, Tsai M. Pancreatic phospholipase A2: new views on old issues Biochimica Et Biophysica Acta. 1441: 215-222. PMID 10570249 DOI: 10.1016/S1388-1981(99)00156-0  0.325
1999 Yuan C, Li J, Selby TL, Byeon IJ, Tsai MD. Tumor suppressor INK4: comparisons of conformational properties between p16(INK4A) and p18(INK4C). Journal of Molecular Biology. 294: 201-11. PMID 10556039 DOI: 10.1006/Jmbi.1999.3231  0.605
1999 Yan H, Tsai MD. Nucleoside monophosphate kinases: structure, mechanism, and substrate specificity. Advances in Enzymology and Related Areas of Molecular Biology. 73: 103-34, x. PMID 10218107 DOI: 10.1002/9780470123195.Ch4  0.356
1999 Li J, Byeon IJ, Ericson K, Poi MJ, O'Maille P, Selby T, Tsai MD. Tumor suppressor INK4: determination of the solution structure of p18INK4C and demonstration of the functional significance of loops in p18INK4C and p16INK4A. Biochemistry. 38: 2930-40. PMID 10074345 DOI: 10.1021/Bi982286E  0.778
1999 Yuan C, Byeon IJL, Poi MJ, Tsai MD. Structural analysis of phospholipase Aa2 from functional perspective. 2. Characterization of a molten globule-like state induced by site-specific mutagenesis Biochemistry. 38: 2919-2929. PMID 10074344 DOI: 10.1021/Bi9822123  0.355
1999 Yuan C, Byeon IJ, Li Y, Tsai MD. Structural analysis of phospholipase A2 from functional perspective. 1. Functionally relevant solution structure and roles of the hydrogen-bonding network. Biochemistry. 38: 2909-18. PMID 10074343 DOI: 10.1021/Bi982211A  0.331
1998 Sekar K, Kumar A, Liu X, Tsai MD, Gelb MH, Sundaralingam M. Structure of the complex of bovine pancreatic phospholipase A2 with a transition-state analogue. Acta Crystallographica. Section D, Biological Crystallography. 54: 334-41. PMID 9761900 DOI: 10.1107/S090744499701247X  0.309
1998 Byeon IJ, Li J, Ericson K, Selby TL, Tevelev A, Kim HJ, O'Maille P, Tsai MD. Tumor suppressor p16INK4A: determination of solution structure and analyses of its interaction with cyclin-dependent kinase 4. Molecular Cell. 1: 421-31. PMID 9660926 DOI: 10.1016/S1097-2765(00)80042-8  0.782
1998 Rogers J, Yu BZ, Tsai MD, Berg OG, Jain MK. Cationic residues 53 and 56 control the anion-induced interfacial k*cat activation of pancreatic phospholipase A2. Biochemistry. 37: 9549-56. PMID 9649338 DOI: 10.1021/Bi972896Z  0.305
1998 Hondal RJ, Zhao Z, Kravchuk AV, Liao H, Riddle SR, Yue X, Bruzik KS, Tsai MD. Mechanism of phosphatidylinositol-specific phospholipase C: A unified view of the mechanism of catalysis Biochemistry. 37: 4568-4580. PMID 9521777 DOI: 10.1021/Bi972646I  0.592
1998 Ahn J, Kraynov VS, Zhong X, Werneburg BG, Tsai MD. DNA polymerase beta: effects of gapped DNA substrates on dNTP specificity, fidelity, processivity and conformational changes. The Biochemical Journal. 79-87. PMID 9512464 DOI: 10.1042/Bj3310079  0.385
1998 Zhong X, Patel SS, Tsai MD. DNA polymerase β. 5. Dissecting the functional roles of the two metal ions with Cr(III)dTTP Journal of the American Chemical Society. 120: 235-236. DOI: 10.1021/Ja973507R  0.353
1997 Zhong X, Patel SS, Werneburg BG, Tsai MD. DNA polymerase beta: multiple conformational changes in the mechanism of catalysis. Biochemistry. 36: 11891-900. PMID 9305982 DOI: 10.1021/Bi963181J  0.356
1997 Hondal RJ, Riddle SR, Kravchuk AV, Zhao Z, Liao H, Bruzik KS, Tsai MD. Phosphatidylinositol-specific phospholipase C: Kinetic and stereochemical evidence for an interaction between arginine-69 and the phosphate group of phosphatidylinositol Biochemistry. 36: 6633-6642. PMID 9184143 DOI: 10.1021/Bi962866G  0.607
1997 Kraynov VS, Werneburg BG, Zhong X, Lee H, Ahn J, Tsai MD. DNA polymerase beta: analysis of the contributions of tyrosine-271 and asparagine-279 to substrate specificity and fidelity of DNA replication by pre-steady-state kinetics. The Biochemical Journal. 103-11. PMID 9173867 DOI: 10.1042/Bj3230103  0.37
1997 Sekar K, Yu BZ, Rogers J, Lutton J, Liu X, Chen X, Tsai MD, Jain MK, Sundaralingam M. Phospholipase A2 engineering. Structural and functional roles of the highly conserved active site residue aspartate-99. Biochemistry. 36: 3104-14. PMID 9115986 DOI: 10.1021/Bi961576X  0.346
1997 Ahn J, Werneburg BG, Tsai MD. DNA polymerase beta: structure-fidelity relationship from Pre-steady-state kinetic analyses of all possible correct and incorrect base pairs for wild type and R283A mutant. Biochemistry. 36: 1100-7. PMID 9033400 DOI: 10.1021/Bi961653O  0.328
1997 Hondal RJ, Zhao Z, Riddle SR, Kravchuk AV, Liao H, Bruzik KS, Tsai MD. Phosphatidylinositol-specific phospholipase C. 3. Elucidation of the catalytic mechanism and comparison with ribonuclease A Journal of the American Chemical Society. 119: 9933-9934. DOI: 10.1021/Ja9714402  0.591
1997 Hondal RJ, Bruzik KS, Zhao Z, Tsai MD. Mechanism of phosphatidylinositol-phospholipase C. 2. Reversal of a thio effect by site-directed mutagenesis [17] Journal of the American Chemical Society. 119: 5477-5478. DOI: 10.1021/Ja964217Y  0.595
1996 Huang B, Schaeffer CJ, Li Q, Tsai MD. Splase: a new class IIS zinc-finger restriction endonuclease with specificity for Sp1 binding sites. Journal of Protein Chemistry. 15: 481-9. PMID 8895094 DOI: 10.1007/Bf01886856  0.383
1996 Huang B, Yu BZ, Rogers J, Byeon IJ, Sekar K, Chen X, Sundaralingam M, Tsai MD, Jain MK. Phospholipase A2 engineering. Deletion of the C-terminus segment changes substrate specificity and uncouples calcium and substrate binding at the zwitterionic interface. Biochemistry. 35: 12164-74. PMID 8810924 DOI: 10.1021/Bi960234O  0.383
1996 Tevelev A, Byeon IL, Selby T, Ericson K, Kim HJ, Kraynov V, Tsai MD. Tumor suppressor p16(INK4A): Structural characterization of wild-type and mutant proteins by NMR and circular dichroism Biochemistry. 35: 9475-9487. PMID 8755727 DOI: 10.1021/Bi960211+  0.37
1996 Werneburg BG, Ahn J, Zhong X, Hondal RJ, Kraynov VS, Tsai MD. DNA polymerase β: Pre-steady-state kinetic analysis and roles of arginine-283 in catalysis and fidelity Biochemistry. 35: 7041-7050. PMID 8679529 DOI: 10.1021/Bi9527202  0.354
1996 Bruzik KS, Guan Z, Riddle S, Tsai M. Synthesis of Inositol Phosphodiesters by Phospholipase C-Catalyzed Transesterification† Journal of the American Chemical Society. 118: 7679-7688. DOI: 10.1021/Ja9616084  0.605
1995 Byeon IL, Shi Z, Tsai M. Mechanism of adenylate kinase. The "essential lysine" helps to orient the phosphates and the active site residues to proper conformations. Biochemistry. 34: 3172-3182. PMID 7880812 DOI: 10.1021/Bi00010A006  0.404
1995 Tzeng MC, Yen CH, Hseu MJ, Dupureur CM, Tsai MD. Conversion of bovine pancreatic phospholipase A2 at a single site into a competitor of neurotoxic phospholipases A2 by site-directed mutagenesis. The Journal of Biological Chemistry. 270: 2120-3. PMID 7836440 DOI: 10.1074/Jbc.270.5.2120  0.322
1995 Tsai M, Jiang R, Dahnke T, Shi Z. Manipulating phosphorus stereospecificity of adenylate kinase by site-directed mutagenesis. Methods in Enzymology. 249: 425-443. PMID 7791622 DOI: 10.1016/0076-6879(95)49044-2  0.352
1995 Liu X, Zhu H, Huang B, Rogers J, Yu BZ, Kumar A, Jain MK, Sundaralingam M, Tsai MD. Phospholipase A2 engineering. Probing the structural and functional roles of N-terminal residues with site-directed mutagenesis, X-ray, and NMR. Biochemistry. 34: 7322-34. PMID 7779775 DOI: 10.1021/Bi00022A005  0.371
1995 Zhu H, Dupureur CM, Zhang X, Tsai MD. Phospholipase A2 engineering. The roles of disulfide bonds in structure, conformational stability, and catalytic function. Biochemistry. 34: 15307-14. PMID 7578147 DOI: 10.1021/Bi00046A040  0.322
1994 Bruzik KS, Hakeem AA, Tsai MD. Are D- and L-chiro-phosphoinositides substrates of phosphatidylinositol-specific phospholipase C? Biochemistry. 33: 8367-8374. PMID 8031771 DOI: 10.1021/Bi00193A026  0.581
1994 Bruzik KS, Tsai MD. Toward the mechanism of phosphoinositide-specific phospholipases C. Bioorganic & Medicinal Chemistry. 2: 49-72. PMID 7922124 DOI: 10.1016/S0968-0896(00)82002-7  0.568
1994 Kumar A, Sekharudu C, Ramakrishnan B, Dupureur CM, Zhu H, Tsai MD, Sundaralingam M. Structure and function of the catalytic site mutant Asp 99 Asn of phospholipase A2: absence of the conserved structural water. Protein Science : a Publication of the Protein Society. 3: 2082-8. PMID 7703854 DOI: 10.1002/Pro.5560031121  0.339
1992 Dupureur CM, Yu BZ, Jain MK, Noel JP, Deng T, Li Y, Byeon IJ, Tsai MD. Phospholipase A2 engineering. Structural and functional roles of highly conserved active site residues tyrosine-52 and tyrosine-73. Biochemistry. 31: 6402-13. PMID 1633153 DOI: 10.1021/Bi00143A007  0.545
1992 Bruzik KS, Morocho AM, Jhon DY, Rhee SG, Tsai MD. Phospholipids chiral at phosphorus. Stereochemical mechanism for the formation of inositol 1-phosphate catalyzed by phosphatidylinositol-specific phospholipase C. Biochemistry. 31: 5183-93. PMID 1318746 DOI: 10.1021/Bi00137A014  0.531
1992 Sekharudu C, Ramakrishnan B, Huang B, Jiang RT, Dupureur CM, Tsai MD, Sundaralingam M. Crystal structure of the Y52F/Y73F double mutant of phospholipase A2: increased hydrophobic interactions of the phenyl groups compensate for the disrupted hydrogen bonds of the tyrosines. Protein Science : a Publication of the Protein Society. 1: 1585-94. PMID 1304890 DOI: 10.1002/Pro.5560011206  0.33
1991 Noel JP, Bingman CA, Deng TL, Dupureur CM, Hamilton KJ, Jiang RT, Kwak JG, Sekharudu C, Sundaralingam M, Tsai MD. Phospholipase A2 engineering. X-ray structural and functional evidence for the interaction of lysine-56 with substrates. Biochemistry. 30: 11801-11. PMID 1751497 DOI: 10.1021/Bi00115A010  0.547
1991 Bruzik KS, Tsai MD. Phospholipase stereospecificity at phosphorus. Methods in Enzymology. 197: 258-69. PMID 1646930 DOI: 10.1016/0076-6879(91)97151-N  0.56
1990 Deng TL, Noel JP, Tsai MD. A novel expression vector for high-level synthesis and secretion of foreign proteins in Escherichia coli: overproduction of bovine pancreatic phospholipase A2. Gene. 93: 229-34. PMID 2227436 DOI: 10.1016/0378-1119(90)90229-K  0.521
1989 Noel JP, Tsai MD. Phospholipase A2 engineering: design, synthesis, and expression of a gene for bovine (pro)phospholipase A2. Journal of Cellular Biochemistry. 40: 309-20. PMID 2674160 DOI: 10.1002/Jcb.240400307  0.512
1987 Bruzik KS, Tsai MD. A calorimetric study of the thermotropic behavior of pure sphingomyelin diastereomers. Biochemistry. 26: 5364-8. PMID 3676257 DOI: 10.1021/Bi00391A022  0.524
1987 Rosario-jansen T, Pownall HJ, Noel JP, Tsai M. Phospholipids Chiral at Phosphorus. 13. Stereochemical Comparison of Phospholipase A2, Lecithin-Cholesterol Acyl Transferase, and Platelet-Activating Factor Phosphorus and Sulfur and the Related Elements. 30: 601-604. DOI: 10.1080/03086648708079137  0.492
1985 Tsai TC, Hart J, Jiang RT, Bruzik K, Tsai MD. Phospholipids chiral at phosphorus. Use of chiral thiophosphatidylcholine to study the metal-binding properties of bee venom phospholipase A2. Biochemistry. 24: 3180-8. PMID 3839681 DOI: 10.1021/Bi00334A016  0.54
1983 Bruzik K, Jiang RT, Tsai MD. Phospholipids chiral at phosphorus. Preparation and spectral properties of chiral thiophospholipids. Biochemistry. 22: 2478-86. PMID 6688028 DOI: 10.1021/Bi00279A026  0.524
1983 Bruzik KS, Jiang R, Tsai M. Phospholipids chiral at phosphorus. synthesis, absolute configurations and applications Phosphorus and Sulfur and the Related Elements. 18: 369-372. DOI: 10.1080/03086648308076042  0.554
1980 Woodard RW, Tsai MD, Floss HG, Crooks PA, Coward JK. Stereochemical course of the transmethylation catalyzed by catechol O-methyltransferase. The Journal of Biological Chemistry. 255: 9124-7. PMID 6997310  0.621
1979 Tsai MD, Floss HG, Rosenfeld HJ, Roberts J. Stereochemistry and mechanism of reactions catalyzed by indolyl-3-alkane alpha-hydroxylase. The Journal of Biological Chemistry. 254: 6437-43. PMID 447726  0.446
1979 Floss HG, Tsai MD. Chiral methyl groups. Advances in Enzymology and Related Areas of Molecular Biology. 50: 243-302. PMID 386720 DOI: 10.1002/9780470122952.Ch5  0.453
1978 Tsai MD, Weaver J, Floss HG, Conn EE, Creveling RK, Mazelis M. Stereochemistry of the beta-cyanoalanine synthetase and S-alkylcysteine lyase reactions. Archives of Biochemistry and Biophysics. 190: 553-9. PMID 718168 DOI: 10.1016/0003-9861(78)90310-7  0.653
1978 Tsai MD, Weintraub HJ, Byrn SR, Chang C, Floss HG. Conformation-reactivity relationship for pyridoxal Schiff's bases. Rates of racemization and alpha-hydrogen exchange of the pyridoxal Schiff's bases of amino acids. Biochemistry. 17: 3183-8. PMID 687574 DOI: 10.1021/Bi00609A002  0.516
1978 Tsai MD, Byrn SR, Chang C, Floss HG, Weintraub HJ. Conformational analysis of pyridoxal Schiff's bases. Nuclear magnetic resonance studies of the conformations about the C4-C4', Calpha-Cbeta, and N-Calpha bonds of the pyridoxal Schiff's bases of amino acids. Biochemistry. 17: 3177-82. PMID 687573 DOI: 10.1021/Bi00609A001  0.511
1978 Vederas JC, Schleicher E, Tsai MD, Floss HG. Stereochemistry and mechanism of reactions catalyzed by tryptophanase Escherichia coli. The Journal of Biological Chemistry. 253: 5350-4. PMID 353050  0.581
1978 Tsai MD, Schleicher E, Potts R, Skye GE, Floss HG. Stereochemistry and mechanism of reactions catalyzed by tryptophan synthetase and its beta2 subunit. The Journal of Biological Chemistry. 253: 5344-9. PMID 149794  0.427
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