Alisa G. Woods, PhD - Related publications

Biology University of California, Irvine, Irvine, CA 
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43 most relevant papers in past 60 days:
Year Citation  Score
2021 Fingleton E, Li Y, Roche KW. Advances in Proteomics Allow Insights Into Neuronal Proteomes. Frontiers in Molecular Neuroscience. 14: 647451. PMID 33935646 DOI: 10.3389/fnmol.2021.647451   
2021 Wang Y, Zhang J, Song W, Tian X, Liu Y, Wang Y, Ma J, Wang C, Yan G. A proteomic analysis of urine biomarkers in autism spectrum disorder. Journal of Proteomics. 104259. PMID 33957315 DOI: 10.1016/j.jprot.2021.104259   
2021 Bhaumik SR. Fluorescence resonance energy transfer in revealing protein-protein interactions in living cells. Emerging Topics in Life Sciences. PMID 33856021 DOI: 10.1042/ETLS20200337   
2021 Swensen AC, He J, Fang AC, Ye Y, Nicora CD, Shi T, Liu AY, Sigdel TK, Sarwal MM, Qian WJ. A Comprehensive Urine Proteome Database Generated From Patients With Various Renal Conditions and Prostate Cancer. Frontiers in Medicine. 8: 548212. PMID 33928097 DOI: 10.3389/fmed.2021.548212   
2021 Fossati A, Li C, Uliana F, Wendt F, Frommelt F, Sykacek P, Heusel M, Hallal M, Bludau I, Capraz T, Xue P, Song J, Wollscheid B, Purcell AW, Gstaiger M, et al. PCprophet: a framework for protein complex prediction and differential analysis using proteomic data. Nature Methods. PMID 33859439 DOI: 10.1038/s41592-021-01107-5   
2021 Rosàs-Canyelles E, Modzelewski AJ, Gomez Martinez AE, Geldert A, Gopal A, He L, Herr AE. Multimodal detection of protein isoforms and nucleic acids from low starting cell numbers. Lab On a Chip. PMID 33978041 DOI: 10.1039/d1lc00073j   
2021 Jiang H, Bao J, Xing Y, Feng C, Li X, Chen Q. Proteomic Analysis of the Hemolymph After Infection in the Chinese Mitten Crab . Frontiers in Immunology. 12: 659723. PMID 33868309 DOI: 10.3389/fimmu.2021.659723   
2021 Wang X, Yang Z, Fang S, Zhang Y, Guo J, Gou L. Declining Levels of Specialized Synaptic Surface Proteins in nNOS-Expressing Interneurons in Mice Treated Prenatally with Valproic Acid. Neurochemical Research. PMID 33876374 DOI: 10.1007/s11064-021-03326-w   
2021 Kalathiya U, Padariya M, Faktor J, Coyaud E, Alfaro JA, Fahraeus R, Hupp TR, Goodlett DR. Interfaces with Structure Dynamics of the Workhorses from Cells Revealed through Cross-Linking Mass Spectrometry (CLMS). Biomolecules. 11. PMID 33806612 DOI: 10.3390/biom11030382   
2021 Huang W, Zhou S, Tang B, Xu H, Wu X, Li N, Zan X, Geng W. Efficient delivery of cytosolic proteins by protein-hexahistidine-metal co-assemblies. Acta Biomaterialia. PMID 33991683 DOI: 10.1016/j.actbio.2021.05.001   
2021 Droujinine IA, Meyer AS, Wang D, Udeshi ND, Hu Y, Rocco D, McMahon JA, Yang R, Guo J, Mu L, Carey DK, Svinkina T, Zeng R, Branon T, Tabatabai A, et al. Proteomics of protein trafficking by in vivo tissue-specific labeling. Nature Communications. 12: 2382. PMID 33888706 DOI: 10.1038/s41467-021-22599-x   
2021 Huttlin EL, Bruckner RJ, Navarrete-Perea J, Cannon JR, Baltier K, Gebreab F, Gygi MP, Thornock A, Zarraga G, Tam S, Szpyt J, Gassaway BM, Panov A, Parzen H, Fu S, et al. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Cell. PMID 33961781 DOI: 10.1016/j.cell.2021.04.011   
2021 Sorokina O, Mclean C, Croning MDR, Heil KF, Wysocka E, He X, Sterratt D, Grant SGN, Simpson TI, Armstrong JD. A unified resource and configurable model of the synapse proteome and its role in disease. Scientific Reports. 11: 9967. PMID 33976238 DOI: 10.1038/s41598-021-88945-7   
2021 Hamey JJ, Nguyen A, Wilkins MR. Discovery of Arginine Methylation, Phosphorylation, and Their Co-occurrence in Condensate-Associated Proteins in . Journal of Proteome Research. PMID 33856219 DOI: 10.1021/acs.jproteome.0c00927   
2021 Das JK, Roy S, Guzzi PH. Analyzing host-viral interactome of SARS-CoV-2 for identifying vulnerable host proteins during COVID-19 pathogenesis. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 104921. PMID 34004362 DOI: 10.1016/j.meegid.2021.104921   
2021 Madda R, Chen CM, Chen CF, Wang JY, Wu PK, Chen WM. Effect of Cryoablation Treatment on the Protein Expression Profile of Low-Grade Central Chondrosarcoma Identified by LC-ESI-MS/MS. Journal of the American Society For Mass Spectrometry. PMID 34003650 DOI: 10.1021/jasms.1c00068   
2021 Drew K, Wallingford JB, Marcotte EM. hu.MAP 2.0: integration of over 15,000 proteomic experiments builds a global compendium of human multiprotein assemblies. Molecular Systems Biology. 17: e10016. PMID 33973408 DOI: 10.15252/msb.202010016   
2021 Patty BJ, Hainer SJ. Transcription factor chromatin profiling genome-wide using uliCUT&RUN in single cells and individual blastocysts. Nature Protocols. 16: 2633-2666. PMID 33911257 DOI: 10.1038/s41596-021-00516-2   
2021 Wang L, Sun X, Lu L, Marie A, Carrel D, Zhao S, Mille C, Song Q, Zhang Y, Ye S. Optoproteomics elucidates the interactome of L-type amino acid transporter 3 (LAT3). Chemical Communications (Cambridge, England). 57: 4734-4737. PMID 33977919 DOI: 10.1039/d0cc08423a   
2021 Huang H, Hao Z, Long L, Yin Z, Wu C, Zhou X, Zhang B. Dermatopontin as a potential pathogenic factor in endometrial cancer. Oncology Letters. 21: 408. PMID 33841569 DOI: 10.3892/ol.2021.12669   
2021 Joeh E, Reeves AE, Parker CG, Huang ML. Mapping Interactions between Glycans and Glycan-Binding Proteins by Live Cell Proximity Tagging. Current Protocols. 1: e104. PMID 33861898 DOI: 10.1002/cpz1.104   
2021 Imbert L, Lenoir-Capello R, Crublet E, Vallet A, Awad R, Ayala I, Juillan-Binard C, Mayerhofer H, Kerfah R, Gans P, Miclet E, Boisbouvier J. In Vitro Production of Perdeuterated Proteins in HO for Biomolecular NMR Studies. Methods in Molecular Biology (Clifton, N.J.). 2199: 127-149. PMID 33125648 DOI: 10.1007/978-1-0716-0892-0_8   
2021 Páleníková P, Harbour ME, Prodi F, Minczuk M, Zeviani M, Ghelli A, Fernández-Vizarra E. Duplexing complexome profiling with SILAC to study human respiratory chain assembly defects. Biochimica Et Biophysica Acta. Bioenergetics. 1862: 148395. PMID 33600785 DOI: 10.1016/j.bbabio.2021.148395   
2021 Khanal DD, Tasharofi S, Azizi M, Khaledi MG. Improved Protein Coverage in Bottom-Up Proteomes Analysis Using Fluoroalcohol-Mediated Supramolecular Biphasic Systems With Mixed Amphiphiles for Sample Extraction, Fractionation, and Enrichment. Analytical Chemistry. PMID 33970614 DOI: 10.1021/acs.analchem.1c00030   
2021 Ye S, Zhai L, Hu H, Tan M, Du S. BoxCar increases the depth and reproducibility of diabetic urinary proteome analysis. Proteomics. Clinical Applications. e2000092. PMID 33929778 DOI: 10.1002/prca.202000092   
2021 Blanco-Urrejola M, Gaminde-Blasco A, Gamarra M, de la Cruz A, Vecino E, Alberdi E, Baleriola J. RNA Localization and Local Translation in Glia in Neurological and Neurodegenerative Diseases: Lessons from Neurons. Cells. 10. PMID 33809142 DOI: 10.3390/cells10030632   
2021 Kamireddy K, Sonbarse PP, Mishra SK, Agrawal L, Chauhan PS, Lata C, Parvatam G. Proteomic approach to identify the differentially abundant proteins during flavour development in tuberous roots of Wight & Arn. 3 Biotech. 11: 173. PMID 33927964 DOI: 10.1007/s13205-021-02714-x   
2021 Geny S, Pichard S, Brion A, Renaud JB, Jacquemin S, Concordet JP, Poterszman A. Tagging Proteins with Fluorescent Reporters Using the CRISPR/Cas9 System and Double-Stranded DNA Donors. Methods in Molecular Biology (Clifton, N.J.). 2247: 39-57. PMID 33301111 DOI: 10.1007/978-1-0716-1126-5_3   
2021 Sitani D, Giorgetti A, Alfonso-Prieto M, Carloni P. Robust principal component analysis-based prediction of protein-protein interaction hot spots. Proteins. 89: 639-647. PMID 33458895 DOI: 10.1002/prot.26047   
2021 Zhang J, Wang Y, Fu S, Yuan Q, Wang Q, Xia N, Wen Y, Li J, Tong S. Role of Small Envelope Protein in Sustaining the Intracellular and Extracellular Levels of Hepatitis B Virus Large and Middle Envelope Proteins. Viruses. 13. PMID 33918367 DOI: 10.3390/v13040613   
2021 Al-Majdoub ZM, Couto N, Achour B, Harwood MD, Carlson G, Warhurst G, Barber J, Rostami-Hodjegan A. Quantification of Proteins Involved in Intestinal Epithelial Handling of Xenobiotics. Clinical Pharmacology and Therapeutics. 109: 1136-1146. PMID 33113152 DOI: 10.1002/cpt.2097   
2021 Maciuba K, Zhang F, Kaiser CM. Facile tethering of stable and unstable proteins for optical tweezers experiments. Biophysical Journal. PMID 33989618 DOI: 10.1016/j.bpj.2021.05.003   
2021 Ferrando J, Solomon LA. Recent Progress Using De Novo Design to Study Protein Structure, Design and Binding Interactions. Life (Basel, Switzerland). 11. PMID 33802210 DOI: 10.3390/life11030225   
2021 Day NJ, Gaffrey MJ, Qian WJ. Stoichiometric Thiol Redox Proteomics for Quantifying Cellular Responses to Perturbations. Antioxidants (Basel, Switzerland). 10. PMID 33807006 DOI: 10.3390/antiox10030499   
2021 Dellas N, Liu J, Botham RC, Huisman GW. Adapting protein sequences for optimized therapeutic efficacy. Current Opinion in Chemical Biology. 64: 38-47. PMID 33933937 DOI: 10.1016/j.cbpa.2021.03.005   
2021 Drake I, Hindy G, Almgren P, Engström G, Nilsson J, Melander O, Orho-Melander M. Methodological considerations for identifying multiple plasma proteins associated with all-cause mortality in a population-based prospective cohort. Scientific Reports. 11: 6734. PMID 33762603 DOI: 10.1038/s41598-021-85991-z   
2021 Walther R, Monge P, Pedersen A, Benderoth A, Pedersen J, Farzadfard A, Mandrup O, Howard K, Otzen D, Zelikin AN. Per-glycosylation of the surface-accessible lysines: one-pot aqueous route to stabilized proteins with native activity. Chembiochem : a European Journal of Chemical Biology. PMID 33998129 DOI: 10.1002/cbic.202100228   
2021 Li Z, Wang Q, Wang Y, Wang K, Liu Z, Zhang W, Ye M. An efficient approach based on basic strong cation exchange chromatography for enriching methylated peptides with high specificity for methylproteomics analysis. Analytica Chimica Acta. 1161: 338467. PMID 33896563 DOI: 10.1016/j.aca.2021.338467   
2021 Kyrilis FL, Belapure J, Kastritis PL. Detecting Protein Communities in Native Cell Extracts by Machine Learning: A Structural Biologist's Perspective. Frontiers in Molecular Biosciences. 8: 660542. PMID 33937337 DOI: 10.3389/fmolb.2021.660542   
2021 Yang JH, Choi HP, Yang A, Azad R, Chen F, Liu Z, Azadzoi KM. Post-Translational Modification Networks of Contractile and Cellular Stress Response Proteins in Bladder Ischemia. Cells. 10. PMID 33925542 DOI: 10.3390/cells10051031   
2021 Vu HN, Situ AJ, Ulmer TS. Isothermal Titration Calorimetry of Membrane Proteins. Methods in Molecular Biology (Clifton, N.J.). 2302: 69-79. PMID 33877623 DOI: 10.1007/978-1-0716-1394-8_5   
2021 Rieder A, Afseth NK, Böcker U, Knutsen SH, Kirkhus B, Mæhre HK, Ballance S, Wubshet SG. Improved estimation of in vitro protein digestibility of different foods using size exclusion chromatography. Food Chemistry. 358: 129830. PMID 33940301 DOI: 10.1016/j.foodchem.2021.129830   
2021 Kanitkar TR, Sen N, Nair S, Soni N, Amritkar K, Ramtirtha Y, Madhusudhan MS. Methods for Molecular Modelling of Protein Complexes. Methods in Molecular Biology (Clifton, N.J.). 2305: 53-80. PMID 33950384 DOI: 10.1007/978-1-0716-1406-8_3