| Year |
Citation |
Score |
| 2024 |
Liu J, Zhong X. Population epigenetics: DNA methylation in the plant omics era. Plant Physiology. PMID 38366882 DOI: 10.1093/plphys/kiae089 |
0.428 |
|
| 2024 |
Liu J, Zhong X. Epiallelic variation of non-coding RNA genes and their phenotypic consequences. Nature Communications. 15: 1375. PMID 38355746 DOI: 10.1038/s41467-024-45771-5 |
0.492 |
|
| 2023 |
Chen J, Lu J, Liu J, Fang J, Zhong X, Song J. DNA conformational dynamics in the context-dependent non-CG CHH methylation by plant methyltransferase DRM2. The Journal of Biological Chemistry. 105433. PMID 37926286 DOI: 10.1016/j.jbc.2023.105433 |
0.75 |
|
| 2023 |
Liu ZW, Liu J, Liu F, Zhong X. Depositing centromere repeats induces heritable intragenic heterochromatin establishment and spreading in Arabidopsis. Nucleic Acids Research. PMID 37094065 DOI: 10.1093/nar/gkad306 |
0.827 |
|
| 2023 |
Yang F, Sun Y, Du X, Chu Z, Zhong X, Chen X. Plant-specific histone deacetylases associate with ARGONAUTE4 to promote heterochromatin stabilization and plant heat tolerance. The New Phytologist. PMID 36631970 DOI: 10.1111/nph.18729 |
0.751 |
|
| 2022 |
Leichter SM, Du J, Zhong X. Structure and Mechanism of Plant DNA Methyltransferases. Advances in Experimental Medicine and Biology. 1389: 137-157. PMID 36350509 DOI: 10.1007/978-3-031-11454-0_6 |
0.858 |
|
| 2022 |
Scheid R, Dowell JA, Sanders D, Jiang J, Denu JM, Zhong X. Histone Acid Extraction and High Throughput Mass Spectrometry to Profile Histone Modifications in Arabidopsis thaliana. Current Protocols. 2: e527. PMID 36001747 DOI: 10.1002/cpz1.527 |
0.82 |
|
| 2022 |
Liu ZW, Simmons CH, Zhong X. Linking transcriptional silencing with chromatin remodeling, folding, and positioning in the nucleus. Current Opinion in Plant Biology. 69: 102261. PMID 35841650 DOI: 10.1016/j.pbi.2022.102261 |
0.83 |
|
| 2022 |
Fang J, Jiang J, Leichter SM, Liu J, Biswal M, Khudaverdyan N, Zhong X, Song J. Mechanistic basis for maintenance of CHG DNA methylation in plants. Nature Communications. 13: 3877. PMID 35790763 DOI: 10.1038/s41467-022-31627-3 |
0.849 |
|
| 2021 |
Kim EJ, Liu P, Zhang S, Donahue K, Wang Y, Schehr JL, Wolfe SK, Dickerson A, Lu L, Rui L, Zhong X, Wisinski KB, Yu M, Suzuki A, Lang JM, et al. BAF155 methylation drives metastasis by hijacking super-enhancers and subverting anti-tumor immunity. Nucleic Acids Research. 49: 12211-12233. PMID 34865122 DOI: 10.1093/nar/gkab1122 |
0.472 |
|
| 2021 |
Hu D, Yu Y, Wang C, Long Y, Liu Y, Feng L, Lu D, Liu B, Jia J, Xia R, Du J, Zhong X, Gong L, Wang K, Zhai J. Erratum for: Multiplex CRISPR-Cas9 editing of DNA methyltransferases in rice uncovers a class of non-CG methylation specific for GC-rich regions. The Plant Cell. PMID 34761253 DOI: 10.1093/plcell/koab256 |
0.683 |
|
| 2021 |
Nozawa K, Chen J, Jiang J, Leichter SM, Yamada M, Suzuki T, Liu F, Ito H, Zhong X. DNA methyltransferase CHROMOMETHYLASE3 prevents ONSEN transposon silencing under heat stress. Plos Genetics. 17: e1009710. PMID 34411103 DOI: 10.1371/journal.pgen.1009710 |
0.83 |
|
| 2021 |
Hu D, Yu Y, Wang C, Long Y, Liu Y, Feng L, Lu D, Liu B, Jia J, Xia R, Du J, Zhong X, Gong L, Wang K, Zhai J. Multiplex CRISPR-Cas9 editing of DNA methyltransferases in rice uncovers a class of non-CG methylation specific for GC-rich regions. The Plant Cell. PMID 34117872 DOI: 10.1093/plcell/koab162 |
0.792 |
|
| 2021 |
Fang J, Leichter SM, Jiang J, Biswal M, Lu J, Zhang ZM, Ren W, Zhai J, Cui Q, Zhong X, Song J. Substrate deformation regulates DRM2-mediated DNA methylation in plants. Science Advances. 7. PMID 34078593 DOI: 10.1126/sciadv.abd9224 |
0.84 |
|
| 2021 |
Scheid R, Chen J, Zhong X. Biological role and mechanism of chromatin readers in plants. Current Opinion in Plant Biology. 61: 102008. PMID 33581373 DOI: 10.1016/j.pbi.2021.102008 |
0.738 |
|
| 2021 |
Jiang J, Liu J, Sanders D, Qian S, Ren W, Song J, Liu F, Zhong X. UVR8 interacts with de novo DNA methyltransferase and suppresses DNA methylation in Arabidopsis. Nature Plants. PMID 33495557 DOI: 10.1038/s41477-020-00843-4 |
0.837 |
|
| 2020 |
Chen J, Liu J, Jiang J, Qian S, Song J, Kabara R, Delo I, Serino G, Liu F, Hua Z, Zhong X. F-box protein CFK1 interacts with and degrades de novo DNA methyltransferase in Arabidopsis. The New Phytologist. PMID 33216996 DOI: 10.1111/nph.17103 |
0.719 |
|
| 2020 |
Jiang J, Ding AB, Liu F, Zhong X. Linking signaling pathways to histone acetylation dynamics in plants. Journal of Experimental Botany. PMID 32333777 DOI: 10.1093/Jxb/Eraa202 |
0.584 |
|
| 2019 |
Chen X, Ding AB, Zhong X. Functions and mechanisms of plant histone deacetylases. Science China. Life Sciences. PMID 31879846 DOI: 10.1007/S11427-019-1587-X |
0.772 |
|
| 2019 |
Yang L, Chen X, Wang Z, Sun Q, Hong A, Zhang A, Zhong X, Hua J. HOS15 and HDA9 negatively regulate immunity through histone deacetylation of intracellular immune receptor NLR genes in Arabidopsis. The New Phytologist. PMID 31854111 DOI: 10.1111/Nph.16380 |
0.717 |
|
| 2019 |
Mayer KS, Chen X, Sanders D, Chen J, Jiang J, Nguyen P, Scalf M, Smith LM, Zhong X. HDA9-PWR-HOS15 is a core histone deacetylase complex regulating transcription and development. Plant Physiology. PMID 30765479 DOI: 10.1104/Pp.18.01156 |
0.826 |
|
| 2018 |
Stoddard CI, Feng S, Campbell MG, Liu W, Wang H, Zhong X, Bernatavichute Y, Cheng Y, Jacobsen SE, Narlikar GJ. A Nucleosome Bridging Mechanism for Activation of a Maintenance DNA Methyltransferase. Molecular Cell. PMID 30415948 DOI: 10.1016/J.Molcel.2018.10.006 |
0.828 |
|
| 2018 |
Yang Z, Qian S, Scheid RN, Lu L, Chen X, Liu R, Du X, Lv X, Boersma MD, Scalf M, Smith LM, Denu JM, Du J, Zhong X. EBS is a bivalent histone reader that regulates floral phase transition in Arabidopsis. Nature Genetics. PMID 30082787 DOI: 10.1038/S41588-018-0187-8 |
0.786 |
|
| 2018 |
Qian S, Lv X, Scheid RN, Lu L, Yang Z, Chen W, Liu R, Boersma MD, Denu JM, Zhong X, Du J. Dual recognition of H3K4me3 and H3K27me3 by a plant histone reader SHL. Nature Communications. 9: 2425. PMID 29930355 DOI: 10.1038/S41467-018-04836-Y |
0.815 |
|
| 2018 |
Lu L, Chen X, Qian S, Zhong X. The plant-specific histone residue Phe41 is important for genome-wide H3.1 distribution. Nature Communications. 9: 630. PMID 29434220 DOI: 10.1038/S41467-018-02976-9 |
0.738 |
|
| 2018 |
Chen X, Lu L, Qian S, Scalf M, Smith LM, Zhong X. Canonical and Non-canonical Actions of Arabidopsis Histone Deacetylases in Ribosomal RNA Processing. The Plant Cell. PMID 29343504 DOI: 10.1105/Tpc.17.00626 |
0.807 |
|
| 2018 |
Lomax A, Woods DP, Dong Y, Bouché F, Rong Y, Mayer KS, Zhong X, Amasino RM. An ortholog of CURLY LEAF/ENHANCER OF ZESTE like-1 is required for proper flowering in Brachypodium distachyon. The Plant Journal : For Cell and Molecular Biology. PMID 29314414 DOI: 10.1111/Tpj.13815 |
0.453 |
|
| 2018 |
Kim E, Wang Y, Lu L, Rui L, Zhong X, Wisinski KB, Xu W. Abstract 4313: Methylated BAF155 promotes cancer metastasis by cooperating with BRD4 to potentiate genes addicted to super-enhancers Cancer Research. 78: 4313-4313. DOI: 10.1158/1538-7445.Am2018-4313 |
0.447 |
|
| 2017 |
Sanders D, Qian S, Fieweger R, Lu L, Dowell JA, Denu JM, Zhong X. Histone lysine-to-methionine mutations reduce histone methylation and cause developmental pleiotropy. Plant Physiology. PMID 28202597 DOI: 10.1104/Pp.16.01499 |
0.81 |
|
| 2017 |
Johnson LM, Du J, Hale CJ, Bischof S, Feng S, Chodavarapu RK, Zhong X, Marson G, Pellegrini M, Segal DJ, Patel DJ, Jacobsen SE. Corrigendum: SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature. 543: 136. PMID 28178234 DOI: 10.1038/Nature21398 |
0.78 |
|
| 2016 |
Kim YJ, Wang R, Gao L, Li D, Xu C, Mang H, Jeon J, Chen X, Zhong X, Kwak JM, Mo B, Xiao L, Chen X. POWERDRESS and HDA9 interact and promote histone H3 deacetylation at specific genomic sites in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. PMID 27930340 DOI: 10.1073/Pnas.1618618114 |
0.769 |
|
| 2016 |
Chen X, Lu L, Mayer KS, Scalf M, Qian S, Lomax A, Smith LM, Zhong X. POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis. Elife. 5. PMID 27873573 DOI: 10.7554/Elife.17214 |
0.802 |
|
| 2016 |
Zeng H, Lu L, Chan NT, Horswill M, Ahlquist P, Zhong X, Xu W. Systematic identification of Ctr9 regulome in ERα-positive breast cancer. Bmc Genomics. 17: 902. PMID 27829357 DOI: 10.1186/S12864-016-3248-3 |
0.486 |
|
| 2016 |
Zhang J, Kong G, Rajagopalan A, Lu L, Song J, Hussaini M, Zhang X, Ranheim EA, Liu Y, Wang J, Gao X, Chang YI, Johnson K, Zhou Y, Yang D, ... ... Zhong X, et al. p53-/- synergizes with enhanced NrasG12D signaling to transform megakaryocyte-erythroid progenitors in acute myeloid leukemia. Blood. PMID 27815262 DOI: 10.1182/Blood-2016-06-719237 |
0.414 |
|
| 2016 |
Li Y, Bouchlaka MN, Wolff J, Grindle KM, Lu L, Qian S, Zhong X, Pflum N, Jobin P, Kahl BS, Eickhoff JC, Wuerzberger-Davis SM, Miyamoto S, Thomas CJ, Yang DT, et al. FBXO10 deficiency and BTK activation upregulate BCL2 expression in mantle cell lymphoma. Oncogene. PMID 27157620 DOI: 10.1038/Onc.2016.155 |
0.305 |
|
| 2016 |
Chen X, Lu L, Mayer KS, Scalf M, Qian S, Lomax A, Smith LM, Zhong X. Author response: POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis Elife. DOI: 10.7554/Elife.17214.028 |
0.422 |
|
| 2015 |
Lu L, Chen X, Sanders D, Qian S, Zhong X. High-resolution mapping of H4K16 and H3K23 acetylation reveals conserved and unique distribution patterns in Arabidopsis and rice. Epigenetics. 10: 1044-53. PMID 26646900 DOI: 10.1080/15592294.2015.1104446 |
0.812 |
|
| 2015 |
Itaya A, Lucas WJ, Qi Y, Qu F, Wang Y, Zhong X, Liu CM. In memory of Professor Biao Ding (1960-2015). Journal of Integrative Plant Biology. 57: 730-1. PMID 26182880 DOI: 10.1111/Jipb.12381 |
0.744 |
|
| 2015 |
Zhong X. Comparative epigenomics: a powerful tool to understand the evolution of DNA methylation. The New Phytologist. PMID 26137858 DOI: 10.1111/Nph.13540 |
0.544 |
|
| 2015 |
Zhong X, Hale CJ, Nguyen M, Ausin I, Groth M, Hetzel J, Vashisht AA, Henderson IR, Wohlschlegel JA, Jacobsen SE. Domains rearranged methyltransferase3 controls DNA methylation and regulates RNA polymerase V transcript abundance in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 112: 911-6. PMID 25561521 DOI: 10.1073/Pnas.1423603112 |
0.85 |
|
| 2014 |
Yelagandula R, Stroud H, Holec S, Zhou K, Feng S, Zhong X, Muthurajan UM, Nie X, Kawashima T, Groth M, Luger K, Jacobsen SE, Berger F. The histone variant H2A.W defines heterochromatin and promotes chromatin condensation in Arabidopsis. Cell. 158: 98-109. PMID 24995981 DOI: 10.1016/J.Cell.2014.06.006 |
0.67 |
|
| 2014 |
Zhong X, Du J, Hale CJ, Gallego-Bartolome J, Feng S, Vashisht AA, Chory J, Wohlschlegel JA, Patel DJ, Jacobsen SE. Molecular mechanism of action of plant DRM de novo DNA methyltransferases. Cell. 157: 1050-60. PMID 24855943 DOI: 10.1016/J.Cell.2014.03.056 |
0.853 |
|
| 2014 |
Johnson LM, Du J, Hale CJ, Bischof S, Feng S, Chodavarapu RK, Zhong X, Marson G, Pellegrini M, Segal DJ, Patel DJ, Jacobsen SE. SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature. 507: 124-128. PMID 24463519 DOI: 10.1038/Nature12931 |
0.853 |
|
| 2014 |
Stroud H, Do T, Du J, Zhong X, Feng S, Johnson L, Patel DJ, Jacobsen SE. Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis. Nature Structural & Molecular Biology. 21: 64-72. PMID 24336224 DOI: 10.1038/Nsmb.2735 |
0.849 |
|
| 2012 |
Du J, Zhong X, Bernatavichute YV, Stroud H, Feng S, Caro E, Vashisht AA, Terragni J, Chin HG, Tu A, Hetzel J, Wohlschlegel JA, Pradhan S, Patel DJ, Jacobsen SE. Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants. Cell. 151: 167-80. PMID 23021223 DOI: 10.1016/J.Cell.2012.07.034 |
0.844 |
|
| 2012 |
Zhong X, Hale CJ, Law JA, Johnson LM, Feng S, Tu A, Jacobsen SE. DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons. Nature Structural & Molecular Biology. 19: 870-5. PMID 22864289 DOI: 10.1038/Nsmb.2354 |
0.817 |
|
| 2011 |
Wang Y, Itaya A, Zhong X, Wu Y, Zhang J, van der Knaap E, Olmstead R, Qi Y, Ding B. Function and evolution of a MicroRNA that regulates a Ca2+-ATPase and triggers the formation of phased small interfering RNAs in tomato reproductive growth. The Plant Cell. 23: 3185-203. PMID 21917547 DOI: 10.1105/Tpc.111.088013 |
0.735 |
|
| 2010 |
Henderson IR, Deleris A, Wong W, Zhong X, Chin HG, Horwitz GA, Kelly KA, Pradhan S, Jacobsen SE. The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana. Plos Genetics. 6: e1001182. PMID 21060858 DOI: 10.1371/Journal.Pgen.1001182 |
0.844 |
|
| 2009 |
Qian S, Zhong X, Yu L, Ding B, de Haan P, Boris-Lawrie K. HIV-1 Tat RNA silencing suppressor activity is conserved across kingdoms and counteracts translational repression of HIV-1. Proceedings of the National Academy of Sciences of the United States of America. 106: 605-10. PMID 19122141 DOI: 10.1073/Pnas.0806822106 |
0.574 |
|
| 2008 |
Zhong X, Ding B. Distinct RNA motifs mediate systemic RNA trafficking. Plant Signaling & Behavior. 3: 58-9. PMID 19704772 DOI: 10.4161/Psb.3.1.4890 |
0.602 |
|
| 2008 |
Zhong X, Archual AJ, Amin AA, Ding B. A genomic map of viroid RNA motifs critical for replication and systemic trafficking. The Plant Cell. 20: 35-47. PMID 18178767 DOI: 10.1105/Tpc.107.056606 |
0.602 |
|
| 2007 |
Zhong X, Tao X, Stombaugh J, Leontis N, Ding B. Tertiary structure and function of an RNA motif required for plant vascular entry to initiate systemic trafficking. The Embo Journal. 26: 3836-46. PMID 17660743 DOI: 10.1038/Sj.Emboj.7601812 |
0.722 |
|
| 2007 |
Itaya A, Zhong X, Bundschuh R, Qi Y, Wang Y, Takeda R, Harris AR, Molina C, Nelson RS, Ding B. A structured viroid RNA serves as a substrate for dicer-like cleavage to produce biologically active small RNAs but is resistant to RNA-induced silencing complex-mediated degradation. Journal of Virology. 81: 2980-94. PMID 17202210 DOI: 10.1128/Jvi.02339-06 |
0.765 |
|
| 2007 |
Wang Y, Zhong X, Itaya A, Ding B. Evidence for the existence of the loop E motif of Potato spindle tuber viroid in vivo. Journal of Virology. 81: 2074-7. PMID 17135317 DOI: 10.1128/Jvi.01781-06 |
0.704 |
|
| 2006 |
Zhong X, Leontis N, Qian S, Itaya A, Qi Y, Boris-Lawrie K, Ding B. Tertiary structural and functional analyses of a viroid RNA motif by isostericity matrix and mutagenesis reveal its essential role in replication. Journal of Virology. 80: 8566-81. PMID 16912306 DOI: 10.1128/Jvi.00837-06 |
0.776 |
|
| 2005 |
Zhong X, Itaya A, Ding B. Transfecting protoplasts by electroporation to study viroid replication. Current Protocols in Microbiology. Unit 16D.4. PMID 18770558 DOI: 10.1002/9780471729259.Mc16D04S00 |
0.683 |
|
| 2005 |
Cao X, Zhou P, Zhang X, Zhu S, Zhong X, Xiao Q, Ding B, Li Y. Identification of an RNA silencing suppressor from a plant double-stranded RNA virus. Journal of Virology. 79: 13018-27. PMID 16189004 DOI: 10.1128/Jvi.79.20.13018-13027.2005 |
0.607 |
|
| 2005 |
Ding B, Itaya A, Zhong X. Viroid trafficking: a small RNA makes a big move. Current Opinion in Plant Biology. 8: 606-12. PMID 16181802 DOI: 10.1016/J.Pbi.2005.09.001 |
0.697 |
|
| 2004 |
Qi Y, Zhong X, Itaya A, Ding B. Dissecting RNA silencing in protoplasts uncovers novel effects of viral suppressors on the silencing pathway at the cellular level. Nucleic Acids Research. 32: e179. PMID 15601991 DOI: 10.1093/Nar/Gnh180 |
0.766 |
|
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