| Year |
Citation |
Score |
| 2023 |
Griffiths M, Liu AE, Gunn SL, Mutan NM, Morales EY, Topp CN. A temporal analysis and response to nitrate availability of 3D root system architecture in diverse pennycress ( L.) accessions. Frontiers in Plant Science. 14: 1145389. PMID 37426970 DOI: 10.3389/fpls.2023.1145389 |
0.49 |
|
| 2022 |
Dowd TG, Li M, Bagnall GC, Johnston A, Topp CN. Root system architecture and environmental flux analysis in mature crops using 3D root mesocosms. Frontiers in Plant Science. 13: 1041404. PMID 36589101 DOI: 10.3389/fpls.2022.1041404 |
0.453 |
|
| 2022 |
Duncan KE, Topp CN. Phenotyping Complex Plant Structures with a Large Format Industrial Scale High-Resolution X-Ray Tomography Instrument. Methods in Molecular Biology (Clifton, N.J.). 2539: 119-132. PMID 35895201 DOI: 10.1007/978-1-0716-2537-8_12 |
0.366 |
|
| 2021 |
Griffiths M, Delory BM, Jawahir V, Wong KM, Cody Bagnall G, Dowd TG, Nusinow DA, Miller AJ, Topp CN. Optimization of root traits to provide enhanced ecosystem services in agricultural systems: a focus on cover crops. Plant, Cell & Environment. PMID 34914117 DOI: 10.1111/pce.14247 |
0.624 |
|
| 2021 |
Zeng D, Li M, Jiang N, Ju Y, Schreiber H, Chambers E, Letscher D, Ju T, Topp CN. TopoRoot: a method for computing hierarchy and fine-grained traits of maize roots from 3D imaging. Plant Methods. 17: 127. PMID 34903248 DOI: 10.1186/s13007-021-00829-z |
0.479 |
|
| 2021 |
Bucciarelli B, Xu Z, Ao S, Cao Y, Monteros MJ, Topp CN, Samac DA. Phenotyping seedlings for selection of root system architecture in alfalfa (Medicago sativa L.). Plant Methods. 17: 125. PMID 34876178 DOI: 10.1186/s13007-021-00825-3 |
0.566 |
|
| 2021 |
Cox KL, Gurazada SGR, Duncan KE, Czymmek KJ, Topp CN, Meyers BC. Organizing your space: The potential for integrating spatial transcriptomics and 3D imaging data in plants. Plant Physiology. PMID 34726737 DOI: 10.1093/plphys/kiab508 |
0.385 |
|
| 2021 |
Duncan KE, Czymmek KJ, Jiang N, Thies AC, Topp CN. X-ray microscopy enables multiscale high-resolution 3D imaging of plant cells, tissues, and organs. Plant Physiology. PMID 34618094 DOI: 10.1093/plphys/kiab405 |
0.525 |
|
| 2021 |
Topp CN, Jez JM. Introduction to emerging technologies in plant science. Emerging Topics in Life Sciences. 5: 177-178. PMID 34027975 DOI: 10.1042/ETLS20200269 |
0.475 |
|
| 2021 |
Dowd T, McInturf S, Li M, Topp CN. Rated-M for mesocosm: allowing the multimodal analysis of mature root systems in 3D. Emerging Topics in Life Sciences. PMID 33555320 DOI: 10.1042/ETLS20200278 |
0.479 |
|
| 2020 |
Sultan S, Snider J, Conn A, Li M, Topp CN, Navlakha S. A Statistical Growth Property of Plant Root Architectures. Plant Phenomics (Washington, D.C.). 2020: 2073723. PMID 33313546 DOI: 10.34133/2020/2073723 |
0.545 |
|
| 2020 |
Li M, Shao MR, Zeng D, Ju T, Kellogg EA, Topp CN. Comprehensive 3D Phenotyping reveals Continuous Morphological Variation across Genetically Diverse Sorghum Inflorescences. The New Phytologist. PMID 32162345 DOI: 10.1111/Nph.16533 |
0.419 |
|
| 2020 |
Duncan K, Jiang N, Dowd T, Topp C. Early Evaluation of Root System Architecture in Maize Using X-ray Microscopy of Root Tips Microscopy and Microanalysis. 1-3. DOI: 10.1017/S1431927620016803 |
0.399 |
|
| 2020 |
Duncan K, Jiang N, Topp C. The Versatility of X-ray Microscopy for Imaging Intact Plant Structures Microscopy and Microanalysis. 1-3. DOI: 10.1017/S1431927620013525 |
0.459 |
|
| 2019 |
Li M, Klein LL, Duncan KE, Jiang N, Chitwood DH, Londo J, Miller AJ, Topp CN. Characterizing grapevine 3D inflorescence architecture using X-ray imaging and advanced morphometrics: implications for understanding cluster density. Journal of Experimental Botany. PMID 31504758 DOI: 10.1093/Jxb/Erz394 |
0.441 |
|
| 2019 |
Michniewicz M, Ho CH, Enders TA, Floro E, Damodaran S, Gunther LK, Powers SK, Frick EM, Topp CN, Frommer WB, Strader LC. TRANSPORTER OF IBA1 Links Auxin and Cytokinin to Influence Root Architecture. Developmental Cell. PMID 31327740 DOI: 10.1016/J.Devcel.2019.06.010 |
0.379 |
|
| 2019 |
Jiang N, Floro E, Bray AL, Laws B, Duncan KE, Topp CN. Three-dimensional Time-lapse Analysis Reveals Multiscale Relationships in Maize Root Systems with Contrasting Architectures. The Plant Cell. PMID 31123089 DOI: 10.1105/tpc.19.00015 |
0.539 |
|
| 2019 |
Wedger MJ, Topp CN, Olsen KM. Convergent evolution of root system architecture in two independently evolved lineages of weedy rice. The New Phytologist. PMID 30883803 DOI: 10.1111/Nph.15791 |
0.522 |
|
| 2018 |
Bray AL, Topp CN. The Quantitative Genetic Control of Root Architecture in Maize. Plant & Cell Physiology. PMID 30020530 DOI: 10.1093/pcp/pcy141 |
0.614 |
|
| 2018 |
Li M, An H, Angelovici R, Bagaza C, Batushansky A, Clark L, Coneva V, Donoghue MJ, Edwards E, Fajardo D, Fang H, Frank MH, Gallaher T, Gebken S, Hill T, ... ... Topp CN, et al. Topological Data Analysis as a Morphometric Method: Using Persistent Homology to Demarcate a Leaf Morphospace. Frontiers in Plant Science. 9: 553. PMID 29922307 DOI: 10.3389/Fpls.2018.00553 |
0.452 |
|
| 2018 |
Li M, Frank M, Coneva V, Mio W, Chitwood DH, Topp CN. The persistent homology mathematical framework provides enhanced genotype-to-phenotype associations for plant morphology. Plant Physiology. PMID 29871979 DOI: 10.1104/Pp.18.00104 |
0.545 |
|
| 2018 |
Delory BM, Li M, Topp CN, Lobet G. archiDART v3.0: A new data analysis pipeline allowing the topological analysis of plant root systems. F1000research. 7: 22. PMID 29636899 DOI: 10.12688/f1000research.13541.1 |
0.552 |
|
| 2017 |
Agnew E, Bray A, Floro E, Ellis N, Gierer J, Lizárraga C, O'Brien D, Wiechert M, Mockler TC, Shakoor N, Topp CN. Whole-Plant Manual and Image-Based Phenotyping in Controlled Environments. Current Protocols in Plant Biology. 2: 1-21. PMID 31725975 DOI: 10.1002/cppb.20044 |
0.605 |
|
| 2017 |
Bucksch A, Atta-Boateng A, Azihou AF, Battogtokh D, Baumgartner A, Binder BM, Braybrook SA, Chang C, Coneva V, DeWitt TJ, Fletcher AG, Gehan MA, Diaz-Martinez DH, Hong L, Iyer-Pascuzzi AS, ... ... Topp CN, et al. Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences. Frontiers in Plant Science. 8: 900. PMID 28659934 DOI: 10.3389/Fpls.2017.00900 |
0.741 |
|
| 2017 |
Li M, Duncan K, Topp CN, Chitwood DH. Persistent homology and the branching topologies of plants. American Journal of Botany. 104: 349-353. PMID 28341629 DOI: 10.3732/ajb.1700046 |
0.518 |
|
| 2016 |
Pauli D, Chapman SC, Bart R, Topp CN, Lawrence-Dill CJ, Poland J, Gore MA. The quest for understanding phenotypic variation via integrated approaches in the field environment. Plant Physiology. PMID 27482076 DOI: 10.1104/Pp.16.00592 |
0.702 |
|
| 2016 |
Topp CN, Bray AL, Ellis NA, Liu Z. How can we harness quantitative genetic variation in crop root systems for agricultural improvement? Journal of Integrative Plant Biology. PMID 26911925 DOI: 10.1111/jipb.12470 |
0.323 |
|
| 2015 |
Goggin FL, Lorence A, Topp CN. Applying high-throughput phenotyping to plant-insect interactions: picturing more resistant crops. Current Opinion in Insect Science. 9: 69-76. PMID 32846711 DOI: 10.1016/J.Cois.2015.03.002 |
0.555 |
|
| 2015 |
Das A, Schneider H, Burridge J, Ascanio AK, Wojciechowski T, Topp CN, Lynch JP, Weitz JS, Bucksch A. Digital imaging of root traits (DIRT): a high-throughput computing and collaboration platform for field-based root phenomics. Plant Methods. 11: 51. PMID 26535051 DOI: 10.1186/S13007-015-0093-3 |
0.763 |
|
| 2015 |
Symonova O, Topp CN, Edelsbrunner H. DynamicRoots: A Software Platform for the Reconstruction and Analysis of Growing Plant Roots. Plos One. 10: e0127657. PMID 26030757 DOI: 10.1371/Journal.Pone.0127657 |
0.55 |
|
| 2015 |
Zurek PR, Topp CN, Benfey PN. Quantitative trait locus mapping reveals regions of the maize genome controlling root system architecture. Plant Physiology. 167: 1487-96. PMID 25673779 DOI: 10.1104/Pp.114.251751 |
0.608 |
|
| 2015 |
Chitwood DH, Topp CN. Revealing plant cryptotypes: defining meaningful phenotypes among infinite traits. Current Opinion in Plant Biology. 24: 54-60. PMID 25658908 DOI: 10.1016/j.pbi.2015.01.009 |
0.52 |
|
| 2013 |
Topp CN, Iyer-Pascuzzi AS, Anderson JT, Lee CR, Zurek PR, Symonova O, Zheng Y, Bucksch A, Mileyko Y, Galkovskyi T, Moore BT, Harer J, Edelsbrunner H, Mitchell-Olds T, Weitz JS, et al. 3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture. Proceedings of the National Academy of Sciences of the United States of America. 110: E1695-704. PMID 23580618 DOI: 10.1073/Pnas.1304354110 |
0.717 |
|
| 2012 |
Galkovskyi T, Mileyko Y, Bucksch A, Moore B, Symonova O, Price CA, Topp CN, Iyer-Pascuzzi AS, Zurek PR, Fang S, Harer J, Benfey PN, Weitz JS. GiA Roots: software for the high throughput analysis of plant root system architecture. Bmc Plant Biology. 12: 116. PMID 22834569 DOI: 10.1186/1471-2229-12-116 |
0.569 |
|
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