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Samuel P. Hazen - Publications

Affiliations: 
Biology Department University of Massachusetts, Amherst, Amherst, MA 
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39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Gordon SP, Contreras-Moreira B, Levy JJ, Djamei A, Czedik-Eysenberg A, Tartaglio VS, Session A, Martin J, Cartwright A, Katz A, Singan VR, Goltsman E, Barry K, Dinh-Thi VH, Chalhoub B, ... ... Hazen SP, et al. Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors. Nature Communications. 11: 3670. PMID 32728126 DOI: 10.1038/S41467-020-17302-5  0.632
2020 Coomey JH, Sibout R, Hazen SP. Grass secondary cell walls, Brachypodium distachyon as a model for discovery. The New Phytologist. PMID 32285456 DOI: 10.1111/Nph.16603  0.514
2020 MacKinnon KJ, Cole BJ, Yu C, Coomey JH, Hartwick NT, Remigereau MS, Duffy T, Michael TP, Kay SA, Hazen SP. Changes in ambient temperature are the prevailing cue in determining Brachypodium distachyon diurnal gene regulation. The New Phytologist. PMID 32112414 DOI: 10.1111/Nph.16507  0.781
2019 Zhao K, Lin F, Romero-Gamboa SP, Saha P, Goh HJ, An G, Jung KH, Hazen SP, Bartley LE. Rice Genome-Scale Network Integration Reveals Transcriptional Regulators of Grass Cell Wall Synthesis. Frontiers in Plant Science. 10: 1275. PMID 31681374 DOI: 10.3389/Fpls.2019.01275  0.798
2019 McCahill IW, Hazen SP. Regulation of Cell Wall Thickening by a Medley of Mechanisms. Trends in Plant Science. PMID 31255545 DOI: 10.1016/J.Tplants.2019.05.012  0.494
2018 Olins JR, Lin L, Lee SJ, Trabucco GM, MacKinnon KJ, Hazen SP. Secondary Wall Regulating NACs Differentially Bind at the Promoter at a -eQTL. Frontiers in Plant Science. 9: 1895. PMID 30627134 DOI: 10.3389/Fpls.2018.01895  0.792
2018 Handakumbura PP, Brow K, Whitney IP, Zhao K, Sanguinet KA, Lee SJ, Olins J, Romero-Gamboa SP, Harrington MJ, Bascom CJ, MacKinnon KJ, Veling MT, Liu L, Lee JE, Vogel JP, ... ... Hazen SP, et al. SECONDARY WALL ASSOCIATED MYB1 is a positive regulator of secondary cell wall thickening in Brachypodium distachyon and is not found in the Brassicaceae. The Plant Journal : For Cell and Molecular Biology. PMID 30054951 DOI: 10.1111/Tpj.14047  0.701
2018 Jansson C, Vogel J, Hazen S, Brutnell T, Mockler T. Climate-smart crops with enhanced photosynthesis. Journal of Experimental Botany. 69: 3801-3809. PMID 30032188 DOI: 10.1093/Jxb/Ery213  0.339
2017 Dixit A, Tomar P, Vaine E, Abdullah H, Hazen S, Dhankher OP. A Stress-Associated Protein, AtSAP13, from Arabidopsis thaliana Provides Tolerance to Multiple Abiotic Stresses. Plant, Cell & Environment. PMID 29194659 DOI: 10.1111/Pce.13103  0.771
2016 Tyler L, Lee SJ, Young ND, DeIulio GA, Benavente E, Reagon M, Sysopha J, Baldini RM, Troìa A, Hazen SP, Caicedo AL. Population Structure in the Model Grass Is Highly Correlated with Flowering Differences across Broad Geographic Areas. The Plant Genome. 9. PMID 27898828 DOI: 10.3835/Plantgenome2015.08.0074  0.628
2016 da Costa RM, Pattathil S, Avci U, Lee SJ, Hazen SP, Winters A, Hahn MG, Bosch M. A cell wall reference profile for Miscanthus bioenergy crops highlights compositional and structural variations associated with development and organ origin. The New Phytologist. PMID 27859277 DOI: 10.1111/Nph.14306  0.679
2015 Alvelo-Maurosa JG, Lee SJ, Hazen SP, Leschine SB. Direct Image-Based Enumeration of Clostridium phytofermentans on Insoluble Plant Biomass Growth Substrates. Applied and Environmental Microbiology. PMID 26637592 DOI: 10.1128/Aem.03119-15  0.617
2015 Taylor-Teeples M, Lin L, de Lucas M, Turco G, Toal TW, Gaudinier A, Young NF, Trabucco GM, Veling MT, Lamothe R, Handakumbura PP, Xiong G, Wang C, Corwin J, Tsoukalas A, ... ... Hazen SP, et al. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Nature. 517: 571-5. PMID 25533953 DOI: 10.1038/Nature14099  0.83
2014 Matos DA, Cole BJ, Whitney IP, MacKinnon KJ, Kay SA, Hazen SP. Daily changes in temperature, not the circadian clock, regulate growth rate in Brachypodium distachyon. Plos One. 9: e100072. PMID 24927130 DOI: 10.1371/Journal.Pone.0100072  0.747
2014 Li L, Zhang Q, Pedmale UV, Nito K, Fu W, Lin L, Hazen SP, Chory J. PIL1 participates in a negative feedback loop that regulates its own gene expression in response to shade. Molecular Plant. 7: 1582-5. PMID 24895419 DOI: 10.1093/Mp/Ssu068  0.511
2014 da Costa RM, Lee SJ, Allison GG, Hazen SP, Winters A, Bosch M. Genotype, development and tissue-derived variation of cell-wall properties in the lignocellulosic energy crop Miscanthus. Annals of Botany. 114: 1265-77. PMID 24737720 DOI: 10.1093/Aob/Mcu054  0.674
2013 Bosch M, Hazen SP. Lignocellulosic feedstocks: research progress and challenges in optimizing biomass quality and yield. Frontiers in Plant Science. 4: 474. PMID 24312113 DOI: 10.3389/Fpls.2013.00474  0.416
2013 Matos DA, Whitney IP, Harrington MJ, Hazen SP. Cell walls and the developmental anatomy of the Brachypodium distachyon stem internode. Plos One. 8: e80640. PMID 24278300 DOI: 10.1371/Journal.Pone.0080640  0.731
2013 Handakumbura PP, Matos DA, Osmont KS, Harrington MJ, Heo K, Kafle K, Kim SH, Baskin TI, Hazen SP. Perturbation of Brachypodium distachyon CELLULOSE SYNTHASE A4 or 7 results in abnormal cell walls. Bmc Plant Biology. 13: 131. PMID 24024469 DOI: 10.1186/1471-2229-13-131  0.801
2013 Trabucco GM, Matos DA, Lee SJ, Saathoff AJ, Priest HD, Mockler TC, Sarath G, Hazen SP. Functional characterization of cinnamyl alcohol dehydrogenase and caffeic acid O-methyltransferase in Brachypodium distachyon. Bmc Biotechnology. 13: 61. PMID 23902793 DOI: 10.1186/1472-6750-13-61  0.617
2012 Lee SJ, Warnick TA, Leschine SB, Hazen SP. A high-throughput biological conversion assay for determining lignocellulosic quality. Methods in Molecular Biology (Clifton, N.J.). 918: 341-9. PMID 22893298 DOI: 10.1007/978-1-61779-995-2_18  0.607
2012 Handakumbura PP, Hazen SP. Transcriptional Regulation of Grass Secondary Cell Wall Biosynthesis: Playing Catch-Up with Arabidopsis thaliana. Frontiers in Plant Science. 3: 74. PMID 22639662 DOI: 10.3389/Fpls.2012.00074  0.838
2012 Lee SJ, Warnick TA, Pattathil S, Alvelo-Maurosa JG, Serapiglia MJ, McCormick H, Brown V, Young NF, Schnell DJ, Smart LB, Hahn MG, Pedersen JF, Leschine SB, Hazen SP. Biological conversion assay using Clostridium phytofermentans to estimate plant feedstock quality. Biotechnology For Biofuels. 5: 5. PMID 22316115 DOI: 10.1186/1754-6834-5-5  0.761
2011 Brkljacic J, Grotewold E, Scholl R, Mockler T, Garvin DF, Vain P, Brutnell T, Sibout R, Bevan M, Budak H, Caicedo AL, Gao C, Gu Y, Hazen SP, Holt BF, et al. Brachypodium as a model for the grasses: today and the future. Plant Physiology. 157: 3-13. PMID 21771916 DOI: 10.1104/Pp.111.179531  0.364
2010 Vogel JP, Garvin DF, Mockler TC, Schmutz J, Rokhsar D, Bevan MW, Barry K, Lucas S, Harmon-Smith M, Lail K, Tice H, Grimwood J, McKenzie N, Huo N, Gu YQ, ... ... Hazen SP, et al. Genome sequencing and analysis of the model grass Brachypodium distachyon Nature. 463: 763-768. PMID 20148030 DOI: 10.1038/Nature08747  0.303
2009 Hazen SP, Naef F, Quisel T, Gendron JM, Chen H, Ecker JR, Borevitz JO, Kay SA. Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays. Genome Biology. 10: R17. PMID 19210792 DOI: 10.1186/Gb-2009-10-2-R17  0.781
2008 Michael TP, Breton G, Hazen SP, Priest H, Mockler TC, Kay SA, Chory J. A morning-specific phytohormone gene expression program underlying rhythmic plant growth. Plos Biology. 6: e225. PMID 18798691 DOI: 10.1371/Journal.Pbio.0060225  0.78
2008 Michael TP, Mockler TC, Breton G, McEntee C, Byer A, Trout JD, Hazen SP, Shen R, Priest HD, Sullivan CM, Givan SA, Yanovsky M, Hong F, Kay SA, Chory J. Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules. Plos Genetics. 4: e14. PMID 18248097 DOI: 10.1371/Journal.Pgen.0040014  0.794
2007 Borevitz JO, Hazen SP, Michael TP, Morris GP, Baxter IR, Hu TT, Chen H, Werner JD, Nordborg M, Salt DE, Kay SA, Chory J, Weigel D, Jones JD, Ecker JR. Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 104: 12057-62. PMID 17626786 DOI: 10.1073/Pnas.0705323104  0.591
2006 Singer T, Fan Y, Chang HS, Zhu T, Hazen SP, Briggs SP. A high-resolution map of Arabidopsis recombinant inbred lines by whole-genome exon array hybridization. Plos Genetics. 2: e144. PMID 17044735 DOI: 10.1371/Journal.Pgen.0020144  0.315
2006 Rensink WA, Hazen SP. Statistical issues in microarray data analysis. Methods in Molecular Biology (Clifton, N.J.). 323: 359-66. PMID 16739591 DOI: 10.1385/1-59745-003-0:359  0.356
2005 Hazen SP, Schultz TF, Pruneda-Paz JL, Borevitz JO, Ecker JR, Kay SA. LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms. Proceedings of the National Academy of Sciences of the United States of America. 102: 10387-92. PMID 16006522 DOI: 10.1073/Pnas.0503029102  0.628
2005 Hazen SP, Borevitz JO, Harmon FG, Pruneda-Paz JL, Schultz TF, Yanovsky MJ, Liljegren SJ, Ecker JR, Kay SA. Rapid array mapping of circadian clock and developmental mutations in Arabidopsis. Plant Physiology. 138: 990-7. PMID 15908595 DOI: 10.1104/Pp.105.061408  0.555
2005 Baxter IR, Young JC, Armstrong G, Foster N, Bogenschutz N, Cordova T, Peer WA, Hazen SP, Murphy AS, Harper JF. A plasma membrane H+-ATPase is required for the formation of proanthocyanidins in the seed coat endothelium of Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 102: 2649-54. PMID 15695592 DOI: 10.1073/Pnas.0406377102  0.352
2005 Hazen SP, Pathan MS, Sanchez A, Baxter I, Dunn M, Estes B, Chang HS, Zhu T, Kreps JA, Nguyen HT. Expression profiling of rice segregating for drought tolerance QTLs using a rice genome array. Functional & Integrative Genomics. 5: 104-16. PMID 15480887 DOI: 10.1007/S10142-004-0126-X  0.465
2003 Hazen SP, Kay SA. Gene arrays are not just for measuring gene expression. Trends in Plant Science. 8: 413-6. PMID 13678907 DOI: 10.1016/S1360-1385(03)00186-9  0.591
2003 Hazen SP, Wu Y, Kreps JA. Gene expression profiling of plant responses to abiotic stress. Functional & Integrative Genomics. 3: 105-11. PMID 12827524 DOI: 10.1007/S10142-003-0088-4  0.479
2003 Hazen SP, Hawley RM, Davis GL, Henrissat B, Walton JD. Quantitative trait loci and comparative genomics of cereal cell wall composition. Plant Physiology. 132: 263-71. PMID 12746531 DOI: 10.1104/Pp.103.020016  0.396
2002 Hazen SP, Scott-Craig JS, Walton JD. Cellulose synthase-like genes of rice. Plant Physiology. 128: 336-40. PMID 11842136 DOI: 10.1104/Pp.010875  0.517
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