| Year |
Citation |
Score |
| 2021 |
Chotewutmontri P, Barkan A. Ribosome profiling elucidates differential gene expression in bundle sheath and mesophyll cells in maize. Plant Physiology. 187: 59-72. PMID 34618144 DOI: 10.1093/plphys/kiab272 |
0.33 |
|
| 2021 |
Manavski N, Mathieu S, Rojas M, Méteignier LV, Brachmann A, Barkan A, Hammani K. In vivo stabilization of endogenous chloroplast RNAs by customized artificial pentatricopeptide repeat proteins. Nucleic Acids Research. PMID 34037778 DOI: 10.1093/nar/gkab390 |
0.517 |
|
| 2020 |
Feiz L, Asakura Y, Mao L, Strickler SR, Fei Z, Rojas M, Barkan A, Stern DB. CFM1, a Member of the CRM-domain Protein Family, Functions in Chloroplast Group II Intron Splicing in Setaria viridis. The Plant Journal : For Cell and Molecular Biology. PMID 33140462 DOI: 10.1111/tpj.15060 |
0.512 |
|
| 2020 |
Zhang J, Guo Y, Fang Q, Zhu Y, Zhang Y, Liu X, Lin Y, Barkan A, Zhou F. The PPR-SMR protein ATP4 is required for editing the chloroplast rps8 mRNA in rice and maize. Plant Physiology. PMID 32928899 DOI: 10.1104/Pp.20.00849 |
0.654 |
|
| 2020 |
Ku JC, Ronceret A, Golubovskaya I, Lee DH, Wang C, Timofejeva L, Kao YH, Gomez Angoa AK, Kremling K, Williams-Carrier R, Meeley R, Barkan A, Cande WZ, Wang CR. Dynamic localization of SPO11-1 and conformational changes of meiotic axial elements during recombination initiation of maize meiosis. Plos Genetics. 16: e1007881. PMID 32310948 DOI: 10.1371/Journal.Pgen.1007881 |
0.323 |
|
| 2020 |
Swift K, Chotewutmontri P, Belcher S, Williams-Carrier R, Barkan A. Functional Analysis of PSRP1, the Chloroplast Homolog of a Cyanobacterial Ribosome Hibernation Factor. Plants (Basel, Switzerland). 9. PMID 32041317 DOI: 10.3390/plants9020209 |
0.304 |
|
| 2019 |
Watkins KP, Williams-Carrier R, Chotewutmontri P, Friso G, Teubner M, Belcher S, Ruwe H, Schmitz-Linneweber C, van Wijk KJ, Barkan A. Exploring the proteome associated with the mRNA encoding the D1 reaction center protein of Photosystem II in plant chloroplasts. The Plant Journal : For Cell and Molecular Biology. PMID 31793101 DOI: 10.1111/tpj.14629 |
0.559 |
|
| 2019 |
McDermott JJ, Watkins KP, Williams-Carrier R, Barkan A. Ribonucleoprotein capture by in vivo expression of a designer pentatricopeptide repeat protein in Arabidopsis. The Plant Cell. PMID 31123048 DOI: 10.1105/tpc.19.00177 |
0.577 |
|
| 2019 |
Yu Q, Barkan A, Maliga P. Engineered RNA-binding protein for transgene activation in non-green plastids. Nature Plants. PMID 31036913 DOI: 10.1038/S41477-019-0413-0 |
0.448 |
|
| 2019 |
Rojas M, Yu Q, Williams-Carrier R, Maliga P, Barkan A. Engineered PPR proteins as inducible switches to activate the expression of chloroplast transgenes. Nature Plants. PMID 31036912 DOI: 10.1038/S41477-019-0412-1 |
0.337 |
|
| 2019 |
Jiang J, Chai X, Manavski N, Williams-Carrier R, He B, Brachmann A, Ji D, Ouyang M, Liu Y, Barkan A, Meurer J, Zhang LX, Chi W. An RNA-chaperone-like protein plays critical roles in chloroplast mRNA stability and translation in Arabidopsis and maize. The Plant Cell. PMID 30962391 DOI: 10.1105/Tpc.18.00946 |
0.652 |
|
| 2019 |
Williams-Carrier R, Brewster C, Belcher SE, Rojas M, Chotewutmontri P, Ljungdahl S, Barkan A. The Arabidopsis pentatricopeptide repeat protein LPE1 and its maize ortholog are required for translation of the chloroplast psbJ RNA. The Plant Journal : For Cell and Molecular Biology. PMID 30844105 DOI: 10.1111/Tpj.14308 |
0.614 |
|
| 2019 |
Barkan A. Nuclear Mutants of Maize with Defects in Chloroplast Polysome Assembly Have Altered Chloroplast RNA Metabolism. The Plant Cell. 5: 389-402. PMID 12271069 DOI: 10.1105/Tpc.5.4.389 |
0.505 |
|
| 2018 |
McDermott JJ, Civic B, Barkan A. Effects of RNA structure and salt concentration on the affinity and kinetics of interactions between pentatricopeptide repeat proteins and their RNA ligands. Plos One. 13: e0209713. PMID 30576379 DOI: 10.1371/journal.pone.0209713 |
0.53 |
|
| 2018 |
Rojas M, Ruwe H, Miranda RG, Zoschke R, Hase N, Schmitz-Linneweber C, Barkan A. Unexpected functional versatility of the pentatricopeptide repeat proteins PGR3, PPR5 and PPR10. Nucleic Acids Research. PMID 30125002 DOI: 10.1093/Nar/Gky737 |
0.549 |
|
| 2018 |
Legen J, Ruf S, Kroop X, Wang G, Barkan A, Bock R, Schmitz-Linneweber C. Stabilization and translation of synthetic operon-derived mRNAs in chloroplasts by sequences representing PPR protein binding sites. The Plant Journal : For Cell and Molecular Biology. PMID 29418028 DOI: 10.1111/Tpj.13863 |
0.551 |
|
| 2018 |
Chotewutmontri P, Stiffler N, Watkins KP, Barkan A. Ribosome Profiling in Maize. Methods in Molecular Biology (Clifton, N.J.). 1676: 165-183. PMID 28986910 DOI: 10.1007/978-1-4939-7315-6_10 |
0.388 |
|
| 2017 |
Miranda RG, McDermott JJ, Barkan A. RNA-binding specificity landscapes of designer pentatricopeptide repeat proteins elucidate principles of PPR-RNA interactions. Nucleic Acids Research. PMID 29294070 DOI: 10.1093/Nar/Gkx1288 |
0.555 |
|
| 2017 |
Shen J, Williams-Carrier R, Barkan A. PSA3, a protein on the stromal face of the thylakoid membrane, promotes photosystem I accumulation in cooperation with the assembly factor PYG7. Plant Physiology. PMID 28522455 DOI: 10.1104/pp.17.00524 |
0.332 |
|
| 2017 |
Zoschke R, Chotewutmontri P, Barkan A. Translation and Co-translational Membrane Engagement of Plastid-encoded Chlorophyll-binding Proteins Are Not Influenced by Chlorophyll Availability in Maize. Frontiers in Plant Science. 8: 385. PMID 28400776 DOI: 10.3389/Fpls.2017.00385 |
0.48 |
|
| 2017 |
Miranda RG, Rojas M, Montgomery MP, Gribbin KP, Barkan A. RNA binding specificity landscape of the pentatricopeptide repeat protein PPR10. Rna (New York, N.Y.). PMID 28108520 DOI: 10.1261/Rna.059568.116 |
0.616 |
|
| 2016 |
Kwon KC, Chan HT, León IR, Williams-Carrier R, Barkan A, Daniell H. Codon-optimization to enhance expression yields insights into chloroplast translation. Plant Physiology. PMID 27465114 DOI: 10.1104/Pp.16.00981 |
0.421 |
|
| 2016 |
Chotewutmontri P, Barkan A. Dynamics of Chloroplast Translation during Chloroplast Differentiation in Maize. Plos Genetics. 12: e1006106. PMID 27414025 DOI: 10.1371/Journal.Pgen.1006106 |
0.586 |
|
| 2016 |
Hammani K, Takenaka M, Miranda R, Barkan A. A PPR protein in the PLS subfamily stabilizes the 5'-end of processed rpl16 mRNAs in maize chloroplasts. Nucleic Acids Research. PMID 27095196 DOI: 10.1093/Nar/Gkw270 |
0.637 |
|
| 2015 |
Zoschke R, Watkins KP, Miranda RG, Barkan A. The PPR-SMR protein PPR53 enhances the stability and translation of specific chloroplast RNAs in maize. The Plant Journal : For Cell and Molecular Biology. PMID 26643268 DOI: 10.1111/Tpj.13093 |
0.682 |
|
| 2015 |
Zoschke R, Barkan A. Genome-wide analysis of thylakoid-bound ribosomes in maize reveals principles of cotranslational targeting to the thylakoid membrane. Proceedings of the National Academy of Sciences of the United States of America. 112: E1678-87. PMID 25775549 DOI: 10.1073/Pnas.1424655112 |
0.401 |
|
| 2015 |
Belcher S, Williams-Carrier R, Stiffler N, Barkan A. Large-scale genetic analysis of chloroplast biogenesis in maize. Biochimica Et Biophysica Acta. 1847: 1004-16. PMID 25725436 DOI: 10.1016/J.Bbabio.2015.02.014 |
0.414 |
|
| 2015 |
Gully BS, Cowieson N, Stanley WA, Shearston K, Small ID, Barkan A, Bond CS. The solution structure of the pentatricopeptide repeat protein PPR10 upon binding atpH RNA. Nucleic Acids Research. 43: 1918-26. PMID 25609698 DOI: 10.1093/Nar/Gkv027 |
0.62 |
|
| 2015 |
Pfalz J, Holtzegel U, Barkan A, Weisheit W, Mittag M, Pfannschmidt T. ZmpTAC12 binds single-stranded nucleic acids and is essential for accumulation of the plastid-encoded polymerase complex in maize. The New Phytologist. 206: 1024-37. PMID 25599833 DOI: 10.1111/Nph.13248 |
0.559 |
|
| 2014 |
Feiz L, Williams-Carrier R, Belcher S, Montano M, Barkan A, Stern DB. A protein with an inactive pterin-4a-carbinolamine dehydratase domain is required for Rubisco biogenesis in plants. The Plant Journal : For Cell and Molecular Biology. 80: 862-9. PMID 25279696 DOI: 10.1111/Tpj.12686 |
0.435 |
|
| 2014 |
Fristedt R, Williams-Carrier R, Merchant SS, Barkan A. A thylakoid membrane protein harboring a DnaJ-type zinc finger domain is required for photosystem I accumulation in plants. The Journal of Biological Chemistry. 289: 30657-67. PMID 25228689 DOI: 10.1074/Jbc.M114.587758 |
0.509 |
|
| 2014 |
Hammani K, Barkan A. An mTERF domain protein functions in group II intron splicing in maize chloroplasts. Nucleic Acids Research. 42: 5033-42. PMID 24500208 DOI: 10.1093/Nar/Gku112 |
0.644 |
|
| 2014 |
Barkan A, Small I. Pentatricopeptide repeat proteins in plants. Annual Review of Plant Biology. 65: 415-42. PMID 24471833 DOI: 10.1146/Annurev-Arplant-050213-040159 |
0.591 |
|
| 2014 |
Williams-Carrier R, Zoschke R, Belcher S, Pfalz J, Barkan A. A major role for the plastid-encoded RNA polymerase complex in the expression of plastid transfer RNAs. Plant Physiology. 164: 239-48. PMID 24246379 DOI: 10.1104/Pp.113.228726 |
0.662 |
|
| 2013 |
Tomcal M, Stiffler N, Barkan A. POGs2: a web portal to facilitate cross-species inferences about protein architecture and function in plants. Plos One. 8: e82569. PMID 24340041 DOI: 10.1371/Journal.Pone.0082569 |
0.378 |
|
| 2013 |
Zoschke R, Watkins KP, Barkan A. A rapid ribosome profiling method elucidates chloroplast ribosome behavior in vivo. The Plant Cell. 25: 2265-75. PMID 23735295 DOI: 10.1105/Tpc.113.111567 |
0.506 |
|
| 2013 |
Germain A, Hotto AM, Barkan A, Stern DB. RNA processing and decay in plastids. Wiley Interdisciplinary Reviews. Rna. 4: 295-316. PMID 23536311 DOI: 10.1002/Wrna.1161 |
0.642 |
|
| 2013 |
Sun T, Germain A, Giloteaux L, Hammani K, Barkan A, Hanson MR, Bentolila S. An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize. Proceedings of the National Academy of Sciences of the United States of America. 110: E1169-78. PMID 23487777 DOI: 10.1073/Pnas.1220162110 |
0.633 |
|
| 2012 |
Udy DB, Belcher S, Williams-Carrier R, Gualberto JM, Barkan A. Effects of reduced chloroplast gene copy number on chloroplast gene expression in maize. Plant Physiology. 160: 1420-31. PMID 22977281 DOI: 10.1104/Pp.112.204198 |
0.548 |
|
| 2012 |
Sosso D, Canut M, Gendrot G, Dedieu A, Chambrier P, Barkan A, Consonni G, Rogowsky PM. PPR8522 encodes a chloroplast-targeted pentatricopeptide repeat protein necessary for maize embryogenesis and vegetative development Journal of Experimental Botany. 63: 5843-5857. PMID 22945943 DOI: 10.1093/Jxb/Ers232 |
0.533 |
|
| 2012 |
Feiz L, Williams-Carrier R, Wostrikoff K, Belcher S, Barkan A, Stern DB. Ribulose-1,5-bis-phosphate carboxylase/oxygenase accumulation factor1 is required for holoenzyme assembly in maize. The Plant Cell. 24: 3435-46. PMID 22942379 DOI: 10.1105/Tpc.112.102012 |
0.418 |
|
| 2012 |
Barkan A, Rojas M, Fujii S, Yap A, Chong YS, Bond CS, Small I. A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins. Plos Genetics. 8: e1002910. PMID 22916040 DOI: 10.1371/Journal.Pgen.1002910 |
0.634 |
|
| 2012 |
Zoschke R, Kroeger T, Belcher S, Schöttler MA, Barkan A, Schmitz-Linneweber C. The pentatricopeptide repeat-SMR protein ATP4 promotes translation of the chloroplast atpB/E mRNA. The Plant Journal : For Cell and Molecular Biology. 72: 547-58. PMID 22708543 DOI: 10.1111/J.1365-313X.2012.05081.X |
0.556 |
|
| 2012 |
Asakura Y, Galarneau E, Watkins KP, Barkan A, van Wijk KJ. Chloroplast RH3 DEAD box RNA helicases in maize and Arabidopsis function in splicing of specific group II introns and affect chloroplast ribosome biogenesis. Plant Physiology. 159: 961-74. PMID 22576849 DOI: 10.1104/Pp.112.197525 |
0.612 |
|
| 2012 |
Barbour JE, Liao IT, Stonaker JL, Lim JP, Lee CC, Parkinson SE, Kermicle J, Simon SA, Meyers BC, Williams-Carrier R, Barkan A, Hollick JB. required to maintain repression2 is a novel protein that facilitates locus-specific paramutation in maize. The Plant Cell. 24: 1761-75. PMID 22562610 DOI: 10.1105/Tpc.112.097618 |
0.618 |
|
| 2012 |
Khrouchtchova A, Monde RA, Barkan A. A short PPR protein required for the splicing of specific group II introns in angiosperm chloroplasts. Rna (New York, N.Y.). 18: 1197-209. PMID 22495966 DOI: 10.1261/Rna.032623.112 |
0.594 |
|
| 2012 |
Hammani K, Cook WB, Barkan A. RNA binding and RNA remodeling activities of the half-a-tetratricopeptide (HAT) protein HCF107 underlie its effects on gene expression. Proceedings of the National Academy of Sciences of the United States of America. 109: 5651-6. PMID 22451905 DOI: 10.1073/Pnas.1200318109 |
0.632 |
|
| 2012 |
Zhelyazkova P, Hammani K, Rojas M, Voelker R, Vargas-Suárez M, Börner T, Barkan A. Protein-mediated protection as the predominant mechanism for defining processed mRNA termini in land plant chloroplasts. Nucleic Acids Research. 40: 3092-105. PMID 22156165 DOI: 10.1093/Nar/Gkr1137 |
0.649 |
|
| 2012 |
Majeran W, Friso G, Asakura Y, Qu X, Huang M, Ponnala L, Watkins KP, Barkan A, van Wijk KJ. Nucleoid-enriched proteomes in developing plastids and chloroplasts from maize leaves: a new conceptual framework for nucleoid functions. Plant Physiology. 158: 156-89. PMID 22065420 DOI: 10.1104/Pp.111.188474 |
0.592 |
|
| 2012 |
Francs-Small CC, Kroeger T, Zmudjak M, Ostersetzer-Biran O, Rahimi N, Small I, Barkan A. A PORR domain protein required for rpl2 and ccmF(C) intron splicing and for the biogenesis of c-type cytochromes in Arabidopsis mitochondria. The Plant Journal : For Cell and Molecular Biology. 69: 996-1005. PMID 22060106 DOI: 10.1111/J.1365-313X.2011.04849.X |
0.548 |
|
| 2011 |
Barkan A. Studying the structure and processing of chloroplast transcripts. Methods in Molecular Biology (Clifton, N.J.). 774: 183-97. PMID 21822840 DOI: 10.1007/978-1-61779-234-2_12 |
0.633 |
|
| 2011 |
Watkins KP, Rojas M, Friso G, van Wijk KJ, Meurer J, Barkan A. APO1 promotes the splicing of chloroplast group II introns and harbors a plant-specific zinc-dependent RNA binding domain. The Plant Cell. 23: 1082-92. PMID 21421812 DOI: 10.1105/Tpc.111.084335 |
0.615 |
|
| 2011 |
Barkan A. Expression of plastid genes: organelle-specific elaborations on a prokaryotic scaffold. Plant Physiology. 155: 1520-32. PMID 21346173 DOI: 10.1104/Pp.110.171231 |
0.32 |
|
| 2011 |
Prikryl J, Rojas M, Schuster G, Barkan A. Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein. Proceedings of the National Academy of Sciences of the United States of America. 108: 415-20. PMID 21173259 DOI: 10.1073/Pnas.1012076108 |
0.797 |
|
| 2010 |
Williams-Carrier R, Stiffler N, Belcher S, Kroeger T, Stern DB, Monde RA, Coalter R, Barkan A. Use of Illumina sequencing to identify transposon insertions underlying mutant phenotypes in high-copy Mutator lines of maize. The Plant Journal : For Cell and Molecular Biology. 63: 167-77. PMID 20409008 DOI: 10.1111/J.1365-313X.2010.04231.X |
0.378 |
|
| 2009 |
Barkan A. Genome-wide analysis of RNA-protein interactions in plants. Methods in Molecular Biology (Clifton, N.J.). 553: 13-37. PMID 19588099 DOI: 10.1007/978-1-60327-563-7_2 |
0.61 |
|
| 2009 |
Pfalz J, Bayraktar OA, Prikryl J, Barkan A. Site-specific binding of a PPR protein defines and stabilizes 5' and 3' mRNA termini in chloroplasts. The Embo Journal. 28: 2042-52. PMID 19424177 DOI: 10.1038/Emboj.2009.121 |
0.796 |
|
| 2009 |
Kroeger TS, Watkins KP, Friso G, van Wijk KJ, Barkan A. A plant-specific RNA-binding domain revealed through analysis of chloroplast group II intron splicing. Proceedings of the National Academy of Sciences of the United States of America. 106: 4537-42. PMID 19251672 DOI: 10.1073/Pnas.0812503106 |
0.639 |
|
| 2008 |
Asakura Y, Bayraktar OA, Barkan A. Two CRM protein subfamilies cooperate in the splicing of group IIB introns in chloroplasts. Rna (New York, N.Y.). 14: 2319-32. PMID 18799595 DOI: 10.1261/Rna.1223708 |
0.591 |
|
| 2008 |
Prikryl J, Watkins KP, Friso G, van Wijk KJ, Barkan A. A member of the Whirly family is a multifunctional RNA- and DNA-binding protein that is essential for chloroplast biogenesis. Nucleic Acids Research. 36: 5152-65. PMID 18676978 DOI: 10.1093/Nar/Gkn492 |
0.789 |
|
| 2008 |
Williams-Carrier R, Kroeger T, Barkan A. Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand. Rna (New York, N.Y.). 14: 1930-41. PMID 18669444 DOI: 10.1261/Rna.1077708 |
0.623 |
|
| 2008 |
Beick S, Schmitz-Linneweber C, Williams-Carrier R, Jensen B, Barkan A. The pentatricopeptide repeat protein PPR5 stabilizes a specific tRNA precursor in maize chloroplasts. Molecular and Cellular Biology. 28: 5337-47. PMID 18591259 DOI: 10.1128/Mcb.00563-08 |
0.678 |
|
| 2007 |
Asakura Y, Barkan A. A CRM domain protein functions dually in group I and group II intron splicing in land plant chloroplasts. The Plant Cell. 19: 3864-75. PMID 18065687 DOI: 10.1105/Tpc.107.055160 |
0.565 |
|
| 2007 |
Watkins KP, Kroeger TS, Cooke AM, Williams-Carrier RE, Friso G, Belcher SE, van Wijk KJ, Barkan A. A ribonuclease III domain protein functions in group II intron splicing in maize chloroplasts. The Plant Cell. 19: 2606-23. PMID 17693527 DOI: 10.1105/Tpc.107.053736 |
0.628 |
|
| 2007 |
Walker NS, Stiffler N, Barkan A. POGs/PlantRBP: a resource for comparative genomics in plants. Nucleic Acids Research. 35: D852-6. PMID 17142226 DOI: 10.1093/Nar/Gkl795 |
0.495 |
|
| 2007 |
Barkan A, Klipcan L, Ostersetzer O, Kawamura T, Asakura Y, Watkins KP. The CRM domain: an RNA binding module derived from an ancient ribosome-associated protein. Rna (New York, N.Y.). 13: 55-64. PMID 17105995 DOI: 10.1261/Rna.139607 |
0.561 |
|
| 2007 |
Schmitz-linneweber C, Barkan A. RNA splicing and RNA editing in chloroplasts Topics in Current Genetics. 19: 213-248. DOI: 10.1007/4735_2007_0233 |
0.506 |
|
| 2006 |
Asakura Y, Barkan A. Arabidopsis orthologs of maize chloroplast splicing factors promote splicing of orthologous and species-specific group II introns. Plant Physiology. 142: 1656-63. PMID 17071648 DOI: 10.1104/Pp.106.088096 |
0.534 |
|
| 2006 |
Schmitz-Linneweber C, Williams-Carrier RE, Williams-Voelker PM, Kroeger TS, Vichas A, Barkan A. A pentatricopeptide repeat protein facilitates the trans-splicing of the maize chloroplast rps12 pre-mRNA. The Plant Cell. 18: 2650-63. PMID 17041147 DOI: 10.1105/Tpc.106.046110 |
0.685 |
|
| 2006 |
Ostheimer GJ, Rojas M, Hadjivassiliou H, Barkan A. Formation of the CRS2-CAF2 group II intron splicing complex is mediated by a 22-amino acid motif in the COOH-terminal region of CAF2. The Journal of Biological Chemistry. 281: 4732-8. PMID 16379013 DOI: 10.1074/Jbc.M508921200 |
0.496 |
|
| 2005 |
Schmitz-Linneweber C, Williams-Carrier R, Barkan A. RNA immunoprecipitation and microarray analysis show a chloroplast Pentatricopeptide repeat protein to be associated with the 5' region of mRNAs whose translation it activates. The Plant Cell. 17: 2791-804. PMID 16141451 DOI: 10.1105/Tpc.105.034454 |
0.676 |
|
| 2005 |
Ostersetzer O, Cooke AM, Watkins KP, Barkan A. CRS1, a chloroplast group II intron splicing factor, promotes intron folding through specific interactions with two intron domains. The Plant Cell. 17: 241-55. PMID 15598799 DOI: 10.1105/Tpc.104.027516 |
0.6 |
|
| 2005 |
Ostheimer GJ, Hadjivassiliou H, Hadjivasiliou H, Kloer DP, Barkan A, Matthews BW. Structural analysis of the group II intron splicing factor CRS2 yields insights into its protein and RNA interaction surfaces. Journal of Molecular Biology. 345: 51-68. PMID 15567410 DOI: 10.1016/J.Jmb.2004.10.032 |
0.522 |
|
| 2005 |
Ostheimer GJ, Hadjivassiliou H, Kloer DP, Barkan A, Matthews BW. Corrigendum to “Structural Analysis of the Group II Intron Splicing Factor CRS2 Yields Insights into its Protein and RNA Interaction Surfaces” [J. Mol. Biol. (2005) 345, 51–68] Journal of Molecular Biology. 350: 185. DOI: 10.1016/J.Jmb.2005.05.007 |
0.532 |
|
| 2004 |
Stern DB, Hanson MR, Barkan A. Genetics and genomics of chloroplast biogenesis: maize as a model system. Trends in Plant Science. 9: 293-301. PMID 15165561 DOI: 10.1016/J.Tplants.2004.04.001 |
0.357 |
|
| 2004 |
Asakura Y, Hirohashi T, Kikuchi S, Belcher S, Osborne E, Yano S, Terashima I, Barkan A, Nakai M. Maize mutants lacking chloroplast FtsY exhibit pleiotropic defects in the biogenesis of thylakoid membranes. The Plant Cell. 16: 201-14. PMID 14688289 DOI: 10.1105/Tpc.014787 |
0.385 |
|
| 2003 |
Williams PM, Barkan A. A chloroplast-localized PPR protein required for plastid ribosome accumulation. The Plant Journal : For Cell and Molecular Biology. 36: 675-86. PMID 14617068 DOI: 10.1046/J.1365-313X.2003.01915.X |
0.616 |
|
| 2003 |
Ostheimer GJ, Williams-Carrier R, Belcher S, Osborne E, Gierke J, Barkan A. Group II intron splicing factors derived by diversification of an ancient RNA-binding domain. The Embo Journal. 22: 3919-29. PMID 12881426 DOI: 10.1093/Emboj/Cdg372 |
0.572 |
|
| 2002 |
Ostheimer GJ, Barkan A, Matthews BW. Crystal structure of E. coli YhbY: a representative of a novel class of RNA binding proteins. Structure (London, England : 1993). 10: 1593-601. PMID 12429100 DOI: 10.1016/S0969-2126(02)00886-9 |
0.581 |
|
| 2001 |
Till B, Schmitz-Linneweber C, Williams-Carrier R, Barkan A. CRS1 is a novel group II intron splicing factor that was derived from a domain of ancient origin. Rna (New York, N.Y.). 7: 1227-38. PMID 11565746 DOI: 10.1017/S1355838201010445 |
0.784 |
|
| 2001 |
Jenkins BD, Barkan A. Recruitment of a peptidyl-tRNA hydrolase as a facilitator of group II intron splicing in chloroplasts Embo Journal. 20: 872-879. PMID 11179231 DOI: 10.1093/Emboj/20.4.872 |
0.538 |
|
| 2000 |
Barkan A, Goldschmidt-Clermont M. Participation of nuclear genes in chloroplast gene expression Biochimie. 82: 559-572. PMID 10946107 DOI: 10.1016/S0300-9084(00)00602-7 |
0.527 |
|
| 1999 |
Walker MB, Roy LM, Coleman E, Voelker R, Barkan A. The maize tha4 gene functions in sec-independent protein transport in chloroplasts and is related to hcf106, tatA, and tatB. The Journal of Cell Biology. 147: 267-76. PMID 10525534 DOI: 10.1083/Jcb.147.2.267 |
0.433 |
|
| 1999 |
McCormac DJ, Barkan A. A nuclear gene in maize required for the translation of the chloroplast atpB/E mRNA Plant Cell. 11: 1709-1716. PMID 10488237 DOI: 10.1105/Tpc.11.9.1709 |
0.473 |
|
| 1999 |
Fisk DG, Walker MB, Barkan A. Molecular cloning of the maize gene crp1 reveals similarity between regulators of mitochondrial and chloroplast gene expression. The Embo Journal. 18: 2621-30. PMID 10228173 DOI: 10.1093/Emboj/18.9.2621 |
0.739 |
|
| 1998 |
Roy LM, Barkan A. A SecY homologue is required for the elaboration of the chloroplast thylakoid membrane and for normal chloroplast gene expression Journal of Cell Biology. 141: 385-395. PMID 9548717 DOI: 10.1083/Jcb.141.2.385 |
0.381 |
|
| 1997 |
Jenkins BD, Kulhanek DJ, Barkan A. Nuclear mutations that block group II RNA splicing in maize chloroplasts reveal several intron classes with distinct requirements for splicing factors Plant Cell. 9: 283-296. PMID 9090875 DOI: 10.1105/Tpc.9.3.283 |
0.589 |
|
| 1995 |
Voelker R, Barkan A. Nuclear genes required for post-translational steps in the biogenesis of the chloroplast cytochrome b6f complex in maize Mgg Molecular &Amp; General Genetics. 249: 507-514. PMID 8544816 DOI: 10.1007/Bf00290576 |
0.422 |
|
| 1995 |
Barkan A, Voelker R, Mendel-Hartvig J, Johnson D, Walker M. Genetic analysis of chloroplast biogenesis in higher plants Physiologia Plantarum. 93: 163-170. DOI: 10.1034/J.1399-3054.1995.930123.X |
0.406 |
|
| 1995 |
Voelker R, Barkan A. Two nuclear mutations disrupt distinct pathways for targeting proteins to the chloroplast thylakoid. The Embo Journal. 14: 3905-3914. DOI: 10.1002/J.1460-2075.1995.Tb00062.X |
0.409 |
|
| 1994 |
Barkan A, Walker M, Nolasco M, Johnson D. A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. The Embo Journal. 13: 3170-3181. DOI: 10.1002/J.1460-2075.1994.Tb06616.X |
0.585 |
|
| 1991 |
Barkan A, Martienssen RA. Inactivation of maize transposon Mu suppresses a mutant phenotype by activating an outward-reading promoter near the end of Mu1 Proceedings of the National Academy of Sciences of the United States of America. 88: 3502-3506. PMID 1849660 DOI: 10.1073/Pnas.88.8.3502 |
0.391 |
|
| 1990 |
Martienssen R, Barkan A, Taylor WC, Freeling M. Somatically heritable switches in the DNA modification of Mu transposable elements monitored with a suppressible mutant in maize Genes and Development. 4: 331-343. PMID 2159936 DOI: 10.1101/Gad.4.3.331 |
0.31 |
|
| 1989 |
Barkan A. Tissue-dependent plastid RNA splicing in maize: transcripts from four plastid genes are predominantly unspliced in leaf meristems and roots The Plant Cell. 1: 437-445. PMID 2562564 DOI: 10.1105/Tpc.1.4.437 |
0.514 |
|
| 1989 |
Martienssen RA, Barkan A, Freeling M, Taylor WC. Molecular cloning of a maize gene involved in photosynthetic membrane organization that is regulated by Robertson's Mutator. The Embo Journal. 8: 1633-1639. DOI: 10.1002/J.1460-2075.1989.Tb03553.X |
0.396 |
|
| 1988 |
Gruissem W, Barkan A, Deng XW, Stern D. Transcriptional and post-transcriptional control of plastid mRNA levels in higher plants. Trends in Genetics : Tig. 4: 258-63. PMID 3070872 DOI: 10.1016/0168-9525(88)90033-9 |
0.53 |
|
| 1988 |
Good PJ, Welch RC, Barkan A, Somasekhar MB, Mertz JE. Both VP2 and VP3 are synthesized from each of the alternative spliced late 19S RNA species of simian virus 40. Journal of Virology. 62: 944-53. PMID 2828689 DOI: 10.1128/Jvi.62.3.944-953.1988 |
0.489 |
|
| 1988 |
Barkan A. Proteins encoded by a complex chloroplast transcription unit are each translated from both monocistronic and polycistronic mRNAs. The Embo Journal. 7: 2637-2644. DOI: 10.1002/J.1460-2075.1988.Tb03116.X |
0.644 |
|
| 1987 |
Taylor WC, Barkan A, Martienssen RA. Use of nuclear mutants in the analysis of chloroplast development. Developmental Genetics. 8: 305-320. PMID 3502977 DOI: 10.1002/Dvg.1020080503 |
0.423 |
|
| 1987 |
Rock CD, Barkan A, Taylor WC. The maize plastid psbB-psbF-petB-petD gene cluster: spliced and unspliced petB and petD RNAs encode alternative products Current Genetics. 12: 69-77. PMID 2835175 DOI: 10.1007/Bf00420729 |
0.527 |
|
| 1984 |
Barkan A, Mertz JE. The number of ribosomes on simian virus 40 late 16S mRNA is determined in part by the nucleotide sequence of its leader. Molecular and Cellular Biology. 4: 813-6. PMID 6325897 DOI: 10.1128/MCB.4.4.813 |
0.398 |
|
| 1981 |
Ghosh PK, Roy P, Barkan A, Mertz JE, Weissman SM, Lebowitz P. Unspliced functional late 19S mRNAs containing intervening sequences are produced by a late leader mutant of simian virus 40. Proceedings of the National Academy of Sciences of the United States of America. 78: 1386-90. PMID 6262793 DOI: 10.1073/Pnas.78.3.1386 |
0.563 |
|
| 1981 |
Barkan A, Mertz JE. DNA sequence analysis of simian virus 40 mutants with deletions mapping in the leader region of the late viral mRNA's: mutants with deletions similar in size and position exhibit varied phenotypes. Journal of Virology. 37: 730-7. PMID 6261017 DOI: 10.1128/jvi.37.2.730-737.1981 |
0.362 |
|
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