| Year |
Citation |
Score |
| 2024 |
Fang C, Jiang N, Teresi SJ, Platts AE, Agarwal G, Niederhuth C, Edger PP, Jiang J. Dynamics of accessible chromatin regions and subgenome dominance in octoploid strawberry. Nature Communications. 15: 2491. PMID 38509076 DOI: 10.1038/s41467-024-46861-0 |
0.341 |
|
| 2023 |
Zhao K, Dong J, Xu J, Bai Y, Yin Y, Long C, Wu L, Lin T, Fan L, Wang Y, Edger PP, Xiong Z. Downregulation of the expression of subgenomic chromosome A7 genes promotes plant height in resynthesized allopolyploid Brassica napus. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 137: 11. PMID 38110525 DOI: 10.1007/s00122-023-04510-y |
0.301 |
|
| 2023 |
Xu MR, Liao ZY, Brock JR, Du K, Li GY, Chen ZQ, Wang YH, Gao ZN, Agarwal G, Wei KH, Shao F, Pang S, Platts AE, van de Velde J, Lin HM, ... ... Edger PP, et al. Maternal dominance contributes to subgenome differentiation in allopolyploid fishes. Nature Communications. 14: 8357. PMID 38102128 DOI: 10.1038/s41467-023-43740-y |
0.363 |
|
| 2023 |
Yocca AE, Platts A, Alger E, Teresi S, Mengist MF, Benevenuto J, Ferrão LFV, Jacobs M, Babinski M, Magallanes-Lundback M, Bayer P, Golicz A, Humann JL, Main D, Espley RV, ... ... Edger PP, et al. Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts. Horticulture Research. 10: uhad202. PMID 38023484 DOI: 10.1093/hr/uhad202 |
0.435 |
|
| 2023 |
Mabry ME, Abrahams RS, Al-Shehbaz IA, Baker WJ, Barak S, Barker MS, Barrett RL, Beric A, Bhattacharya S, Carey SB, Conant GC, Conran JG, Dassanayake M, Edger PP, Hall JC, et al. Complementing model species with model clades. The Plant Cell. PMID 37824826 DOI: 10.1093/plcell/koad260 |
0.757 |
|
| 2023 |
Yocca AE, Platts A, Alger E, Teresi S, Mengist MF, Benevenuto J, Felipe V Ferrão L, Jacobs M, Babinski M, Magallanes-Lundback M, Bayer P, Golicz A, Humann JL, Main D, Espley RV, ... ... Edger PP, et al. Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts. Biorxiv : the Preprint Server For Biology. PMID 37577683 DOI: 10.1101/2023.07.31.551392 |
0.435 |
|
| 2023 |
Bird KA, Pires JC, VanBuren R, Xiong Z, Edger PP. Dosage-sensitivity shapes how genes transcriptionally respond to allopolyploidy and homoeologous exchange in resynthesized Brassica napus. Genetics. PMID 37338008 DOI: 10.1093/genetics/iyad114 |
0.616 |
|
| 2023 |
Albert NW, Iorizzo M, Mengist MF, Montanari S, Zalapa J, Maule A, Edger PP, Yocca AE, Platts AE, Pucker B, Espley RV. Vaccinium as a comparative system for understanding of complex flavonoid accumulation profiles and regulation in fruit. Plant Physiology. PMID 37129240 DOI: 10.1093/plphys/kiad250 |
0.366 |
|
| 2023 |
Deb SK, Edger PP, Pires JC, McKain MR. Patterns, mechanisms, and consequences of homoeologous exchange in allopolyploid angiosperms: A genomic and epigenomic perspective. The New Phytologist. PMID 37010081 DOI: 10.1111/nph.18927 |
0.618 |
|
| 2023 |
Cao Y, Zhao K, Xu J, Wu L, Hao F, Sun M, Dong J, Chao G, Zhang H, Gong X, Chen Y, Chen C, Qian W, Pires JC, Edger PP, et al. Genome balance and dosage effect drive allopolyploid formation in . Proceedings of the National Academy of Sciences of the United States of America. 120: e2217672120. PMID 36989303 DOI: 10.1073/pnas.2217672120 |
0.56 |
|
| 2023 |
Bryson AE, Lanier ER, Lau KH, Hamilton JP, Vaillancourt B, Mathieu D, Yocca AE, Miller GP, Edger PP, Buell CR, Hamberger B. Uncovering a miltiradiene biosynthetic gene cluster in the Lamiaceae reveals a dynamic evolutionary trajectory. Nature Communications. 14: 343. PMID 36670101 DOI: 10.1038/s41467-023-35845-1 |
0.468 |
|
| 2022 |
Mengist MF, Bostan H, De Paola D, Teresi SJ, Platts AE, Cremona G, Xinpeng Q, Mackey T, Bassil NV, Ashrafi H, Giongo L, Jibran R, Chagné D, Bianco L, Lila MA, ... ... Edger PP, et al. Autopolyploid inheritance and a heterozygous reciprocal translocation shape chromosome genetic behavior in tetraploid blueberry (Vaccinium corymbosum). The New Phytologist. PMID 35962608 DOI: 10.1111/nph.18428 |
0.416 |
|
| 2022 |
Yim WC, Swain ML, Ma D, An H, Bird KA, Curdie DD, Wang S, Ham HD, Luzuriaga-Neira A, Kirkwood JS, Hur M, Solomon JKQ, Harper JF, Kosma DK, Alvarez-Ponce D, ... ... Edger PP, et al. The final piece of the Triangle of U: Evolution of the tetraploid Brassica carinata genome. The Plant Cell. PMID 35961044 DOI: 10.1093/plcell/koac249 |
0.762 |
|
| 2022 |
Hao Y, Fleming J, Petterson J, Lyons E, Edger PP, Pires JC, Thorne JL, Conant GC. Convergent evolution of polyploid genomes from across the eukaryotic tree of life. G3 (Bethesda, Md.). PMID 35451464 DOI: 10.1093/g3journal/jkac094 |
0.771 |
|
| 2022 |
Teresi SJ, Teresi MB, Edger PP. TE Density: a tool to investigate the biology of transposable elements. Mobile Dna. 13: 11. PMID 35413944 DOI: 10.1186/s13100-022-00264-4 |
0.408 |
|
| 2022 |
Hu Y, Feng C, Yang L, Edger PP, Kang M. Genomic population structure and local adaptation of the wild strawberry Fragaria nilgerrensis. Horticulture Research. PMID 35043184 DOI: 10.1093/hr/uhab059 |
0.353 |
|
| 2021 |
Yocca AE, Edger PP. Current status and future perspectives on the evolution of cis-regulatory elements in plants. Current Opinion in Plant Biology. 65: 102139. PMID 34837823 DOI: 10.1016/j.pbi.2021.102139 |
0.364 |
|
| 2021 |
Qiao Q, Edger PP, Xue L, Qiong, Lu J, Zhang Y, Cao Q, Yocca AE, Platts AE, Knapp SJ, Van Montagu M, Van de Peer Y, Lei J, Zhang T. Evolutionary history and pan-genome dynamics of strawberry ( spp.). Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34697247 DOI: 10.1073/pnas.2105431118 |
0.512 |
|
| 2021 |
Bird KA, Hardigan MA, Ragsdale AP, Knapp SJ, VanBuren R, Edger PP. Diversification, spread, and admixture of octoploid strawberry in the Western Hemisphere. American Journal of Botany. PMID 34636416 DOI: 10.1002/ajb2.1776 |
0.443 |
|
| 2021 |
Yocca AE, Edger PP. Machine learning approaches to identify core and dispensable genes in pangenomes. The Plant Genome. e20135. PMID 34533282 DOI: 10.1002/tpg2.20135 |
0.436 |
|
| 2021 |
Alger EI, Platts AE, Deb SK, Luo X, Ou S, Cao Y, Hummer KE, Xiong Z, Knapp SJ, Liu Z, McKain MR, Edger PP. Chromosome-Scale Genome for a Red-Fruited, Perpetual Flowering and Runnerless Woodland Strawberry (). Frontiers in Genetics. 12: 671371. PMID 34335685 DOI: 10.3389/fgene.2021.671371 |
0.331 |
|
| 2021 |
Wu C, Deng C, Hilario E, Albert NW, Lafferty D, Grierson ER, Plunkett BJ, Elborough C, Saei A, Günther CS, Ireland H, Yocca A, Edger PP, Jaakola L, Karppinen K, et al. A chromosome-scale assembly of the bilberry genome identifies a complex locus controlling berry anthocyanin composition. Molecular Ecology Resources. PMID 34260155 DOI: 10.1111/1755-0998.13467 |
0.483 |
|
| 2021 |
Mabry ME, Turner-Hissong SD, Gallagher EY, McAlvay AC, An H, Edger PP, Moore JD, Pink DAC, Teakle GR, Stevens CJ, Barker G, Labate J, Fuller DQ, Allaby RG, Beissinger T, et al. The Evolutionary History of Wild, Domesticated, and Feral Brassica Oleracea (Brassicaceae). Molecular Biology and Evolution. PMID 34157722 DOI: 10.1093/molbev/msab183 |
0.699 |
|
| 2021 |
Beric A, Mabry ME, Harkess AE, Brose J, Schranz ME, Conant GC, Edger PP, Meyers BC, Pires JC. Comparative phylogenetics of repetitive elements in a diverse order of flowering plants (Brassicales). G3 (Bethesda, Md.). PMID 33993297 DOI: 10.1093/g3journal/jkab140 |
0.642 |
|
| 2021 |
Hao Y, Mabry ME, Edger PP, Freeling M, Zheng C, Jin L, VanBuren R, Colle M, An H, Abrahams RS, Washburn JD, Qi X, Barry K, Daum C, Shu S, et al. The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible. Genome Research. PMID 33863805 DOI: 10.1101/gr.270033.120 |
0.805 |
|
| 2021 |
Xiong Z, Gaeta RT, Edger PP, Cao Y, Zhao K, Zhang S, Pires JC. Chromosome inheritance and meiotic stability in allopolyploid Brassica napus. G3 (Bethesda, Md.). 11. PMID 33704431 DOI: 10.1093/g3journal/jkaa011 |
0.48 |
|
| 2021 |
Yocca AE, Lu Z, Schmitz RJ, Freeling M, Edger PP. Evolution of conserved noncoding sequences in Arabidopsis thaliana. Molecular Biology and Evolution. PMID 33565589 DOI: 10.1093/molbev/msab042 |
0.679 |
|
| 2021 |
Hardigan MA, Lorant A, Pincot DDA, Feldmann MJ, Famula RA, Acharya CB, Lee S, Verma S, Whitaker VM, Bassil N, Zurn J, Cole GS, Bird K, Edger PP, Knapp SJ. Unraveling the Complex Hybrid Ancestry and Domestication History of Cultivated Strawberry. Molecular Biology and Evolution. PMID 33507311 DOI: 10.1093/molbev/msab024 |
0.325 |
|
| 2020 |
Lou P, Woody S, Greenham K, VanBuren R, Colle M, Edger PP, Sartor R, Zheng Y, Levendoski N, Lim J, So C, Stoveken B, Woody T, Zhao J, Shen S, et al. Genetic and genomic resources to study natural variation in . Plant Direct. 4: e00285. PMID 33364543 DOI: 10.1002/pld3.285 |
0.374 |
|
| 2020 |
Bird KA, Niederhuth C, Ou S, Gehan M, Pires JC, Xiong Z, VanBuren R, Edger PP. Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus. The New Phytologist. PMID 33280122 DOI: 10.1111/nph.17137 |
0.574 |
|
| 2020 |
Mabry ME, Brose JM, Blischak PD, Sutherland B, Dismukes WT, Bottoms CA, Edger PP, Washburn JD, An H, Hall JC, McKain MR, Al-Shehbaz I, Barker MS, Schranz ME, Conant GC, et al. Phylogeny and multiple independent whole-genome duplication events in the Brassicales. American Journal of Botany. PMID 32830865 DOI: 10.1002/Ajb2.1514 |
0.742 |
|
| 2020 |
Alger EI, Edger PP. One subgenome to rule them all: underlying mechanisms of subgenome dominance. Current Opinion in Plant Biology. 54: 108-113. PMID 32344327 DOI: 10.1016/j.pbi.2020.03.004 |
0.398 |
|
| 2020 |
Whitaker VM, Knapp SJ, Hardigan MA, Edger PP, Slovin JP, Bassil NV, Hytönen T, Mackenzie KK, Lee S, Jung S, Main D, Barbey CR, Verma S. A roadmap for research in octoploid strawberry. Horticulture Research. 7: 33. PMID 32194969 DOI: 10.1038/S41438-020-0252-1 |
0.352 |
|
| 2020 |
VanBuren R, Man Wai C, Wang X, Pardo J, Yocca AE, Wang H, Chaluvadi SR, Han G, Bryant D, Edger PP, Messing J, Sorrells ME, Mockler TC, Bennetzen JL, Michael TP. Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff. Nature Communications. 11: 884. PMID 32060277 DOI: 10.1038/S41467-020-14724-Z |
0.643 |
|
| 2020 |
V Ferrão LF, Johnson TS, Benevenuto J, Edger PP, Colquhoun TA, Munoz PR. Genome-wide association of volatiles reveals candidate loci for blueberry flavor. The New Phytologist. PMID 31999829 DOI: 10.1111/nph.16459 |
0.397 |
|
| 2019 |
Hardigan MA, Feldmann MJ, Lorant A, Bird KA, Famula R, Acharya C, Cole G, Edger PP, Knapp SJ. Genome Synteny Has Been Conserved Among the Octoploid Progenitors of Cultivated Strawberry Over Millions of Years of Evolution. Frontiers in Plant Science. 10: 1789. PMID 32158449 DOI: 10.3389/Fpls.2019.01789 |
0.432 |
|
| 2019 |
Barbey C, Lee S, Verma S, Bird KA, Yocca AE, Edger PP, Knapp SJ, Whitaker VM, Folta KM. Disease Resistance Genetics and Genomics in Octoploid Strawberry. G3 (Bethesda, Md.). PMID 31420323 DOI: 10.1534/g3.119.400597 |
0.335 |
|
| 2019 |
Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, et al. Author Correction: Origin and evolution of the octoploid strawberry genome. Nature Genetics. PMID 30842601 DOI: 10.1038/S41588-019-0380-4 |
0.695 |
|
| 2019 |
Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, et al. Origin and evolution of the octoploid strawberry genome. Nature Genetics. PMID 30804557 DOI: 10.1038/S41588-019-0356-4 |
0.78 |
|
| 2019 |
Schultz JC, Edger PP, Body MJA, Appel HM. A galling insect activates plant reproductive programs during gall development. Scientific Reports. 9: 1833. PMID 30755671 DOI: 10.1038/S41598-018-38475-6 |
0.317 |
|
| 2019 |
Colle M, Leisner CP, Wai CM, Ou S, Bird KA, Wang J, Wisecaver JH, Yocca AE, Alger EI, Tang H, Xiong Z, Callow P, Ben-Zvi G, Brodt A, Baruch K, ... ... Edger PP, et al. Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry. Gigascience. PMID 30715294 DOI: 10.1093/Gigascience/Giz012 |
0.409 |
|
| 2019 |
Wilhelmsson PKI, Chandler JO, Fernandez-Pozo N, Graeber K, Ullrich KK, Arshad W, Khan S, Hofberger JA, Buchta K, Edger PP, Pires JC, Schranz ME, Leubner-Metzger G, Rensing SA. Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds. Bmc Genomics. 20: 95. PMID 30700268 DOI: 10.1186/S12864-019-5452-4 |
0.584 |
|
| 2018 |
Hardigan MA, Poorten TJ, Acharya CB, Cole GS, Hummer KE, Bassil N, Edger PP, Knapp SJ. Domestication of Temperate and Coastal Hybrids with Distinct Ancestral Gene Selection in Octoploid Strawberry. The Plant Genome. 11. PMID 30512037 DOI: 10.3835/Plantgenome2018.07.0049 |
0.304 |
|
| 2018 |
VanBuren R, Wai CM, Colle M, Wang J, Sullivan S, Bushakra JM, Liachko I, Vining KJ, Dossett M, Finn CE, Jibran R, Chagné D, Childs K, Edger PP, Mockler TC, et al. A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome. Gigascience. PMID 30107523 DOI: 10.1093/Gigascience/Giy094 |
0.467 |
|
| 2018 |
Bird KA, VanBuren R, Puzey JR, Edger PP. The causes and consequences of subgenome dominance in hybrids and recent polyploids. The New Phytologist. PMID 29882360 DOI: 10.1111/Nph.15256 |
0.439 |
|
| 2018 |
Edger PP, McKain MR, Bird KA, VanBuren R. Subgenome assignment in allopolyploids: challenges and future directions. Current Opinion in Plant Biology. 42: 76-80. PMID 29649616 DOI: 10.1016/J.Pbi.2018.03.006 |
0.38 |
|
| 2018 |
Hao Y, Washburn JD, Rosenthal J, Nielsen B, Lyons E, Edger PP, Pires JC, Conant GC. Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived. Genome Biology and Evolution. 10: 999-1011. PMID 29617811 DOI: 10.1093/Gbe/Evy061 |
0.764 |
|
| 2018 |
Pincot DDA, Poorten TJ, Hardigan MA, Harshman JM, Acharya CB, Cole GS, Gordon TR, Stueven M, Edger PP, Knapp SJ. Genome-Wide Association Mapping Uncoversa Dominant Gene Conferring Resistance to Fusarium Wilt in Strawberry. G3 (Bethesda, Md.). PMID 29602808 DOI: 10.1534/G3.118.200129 |
0.311 |
|
| 2018 |
Emery M, Willis MMS, Hao Y, Barry K, Oakgrove K, Peng Y, Schmutz J, Lyons E, Pires JC, Edger PP, Conant GC. Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization. Plos Genetics. 14: e1007267. PMID 29590103 DOI: 10.1371/Journal.Pgen.1007267 |
0.784 |
|
| 2018 |
Edger PP, Hall JC, Harkess A, Tang M, Coombs J, Mohammadin S, Schranz ME, Xiong Z, Leebens-Mack J, Meyers BC, Sytsma KJ, Koch MA, Al-Shehbaz IA, Pires JC. Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses. American Journal of Botany. PMID 29574686 DOI: 10.1002/Ajb2.1040 |
0.71 |
|
| 2018 |
Jibran R, Dzierzon H, Bassil N, Bushakra JM, Edger PP, Sullivan S, Finn CE, Dossett M, Vining KJ, VanBuren R, Mockler TC, Liachko I, Davies KM, Foster TM, Chagné D. Chromosome-scale scaffolding of the black raspberry (Rubus occidentalis L.) genome based on chromatin interaction data. Horticulture Research. 5: 8. PMID 29423238 DOI: 10.1038/S41438-017-0013-Y |
0.342 |
|
| 2018 |
Wang J, Cappa JJ, Harris JP, Edger PP, Zhou W, Pires JC, Adair M, Unruh SA, Simmons MP, Schiavon M, Pilon-Smits EAH. Transcriptome-wide comparison of selenium hyperaccumulator and non-accumulator Stanleya species provides new insight into key processes mediating the hyperaccumulation syndrome. Plant Biotechnology Journal. PMID 29412503 DOI: 10.1111/Pbi.12897 |
0.528 |
|
| 2018 |
VanBuren R, Wai CM, Ou S, Pardo J, Bryant D, Jiang N, Mockler TC, Edger P, Michael TP. Extreme haplotype variation in the desiccation-tolerant clubmoss Selaginella lepidophylla. Nature Communications. 9: 13. PMID 29296019 DOI: 10.1038/S41467-017-02546-5 |
0.562 |
|
| 2017 |
Edger PP, VanBuren R, Colle M, Poorten TJ, Wai CM, Niederhuth CE, Alger EI, Ou S, Acharya CB, Wang J, Callow P, McKain MR, Shi J, Collier C, Xiong Z, et al. Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity. Gigascience. PMID 29253147 DOI: 10.1093/Gigascience/Gix124 |
0.414 |
|
| 2017 |
Lopez L, Wolf EM, Pires JC, Edger PP, Koch MA. Molecular Resources from Transcriptomes in the Brassicaceae Family. Frontiers in Plant Science. 8: 1488. PMID 28900436 DOI: 10.3389/Fpls.2017.01488 |
0.573 |
|
| 2017 |
Edger PP, Smith RD, McKain MR, Cooley AM, Vallejo-Marin M, Yuan YW, Bewick AJ, Ji L, Platts AE, Bowman MJ, Childs K, Washburn JD, Schmitz R, Smith GD, Pires JC, et al. Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year- old naturally established neo-allopolyploid monkeyflower. The Plant Cell. PMID 28814644 DOI: 10.1105/Tpc.17.00010 |
0.596 |
|
| 2017 |
Mohammadin S, Peterse K, van de Kerke SJ, Chatrou LW, Dönmez AA, Mummenhoff K, Pires JC, Edger PP, Al-Shehbaz IA, Schranz ME. Anatolian origins and diversification of Aethionema, the sister lineage of the core Brassicaceae. American Journal of Botany. PMID 28743759 DOI: 10.3732/Ajb.1700091 |
0.57 |
|
| 2017 |
VanBuren R, Wai J, Zhang Q, Song X, Edger PP, Bryant D, Michael TP, Mockler TC, Bartels D. Seed desiccation mechanisms co-opted for vegetative desiccation in the resurrection grass Oropetium thomeaum. Plant, Cell & Environment. PMID 28730594 DOI: 10.1111/Pce.13027 |
0.326 |
|
| 2017 |
Wai CM, VanBuren R, Zhang J, Huang L, Miao W, Edger PP, Yim WC, Priest HD, Meyers BC, Mockler T, Smith JAC, Cushman JC, Ming R. Temporal and spatial transcriptomic and microRNA dynamics of CAM photosynthesis in pineapple. The Plant Journal : For Cell and Molecular Biology. PMID 28670834 DOI: 10.1111/Tpj.13630 |
0.324 |
|
| 2017 |
Johnson KL, Cassin AM, Lonsdale A, Wong GK, Soltis D, Miles NW, Melkonian M, Melkonian B, Deyholos MK, Leebens-Mack J, Rothfels CJ, Stevenson DW, Graham SW, Wang X, Wu S, ... ... Edger PP, et al. Insights into the evolution of hydroxyproline rich glycoproteins from 1000 plant transcriptomes. Plant Physiology. PMID 28446636 DOI: 10.1104/Pp.17.00295 |
0.553 |
|
| 2017 |
Stanton KA, Edger PP, Puzey JR, Kinser T, Cheng P, Vernon DM, Forsthoefel NR, Cooley AM. A Whole Transcriptome Approach to Evaluating Reference Genes for Quantitative Gene Expression Studies: A Case Study in Mimulus. G3 (Bethesda, Md.). PMID 28258113 DOI: 10.1534/G3.116.038075 |
0.315 |
|
| 2016 |
Golicz AA, Bayer PE, Barker GC, Edger PP, Kim H, Martinez PA, Chan CK, Severn-Ellis A, McCombie WR, Parkin IA, Paterson AH, Pires JC, Sharpe AG, Tang H, Teakle GR, et al. The pangenome of an agronomically important crop plant Brassica oleracea. Nature Communications. 7: 13390. PMID 27834372 DOI: 10.1038/Ncomms13390 |
0.639 |
|
| 2016 |
Burke SV, Wysocki WP, Zuloaga FO, Craine JM, Pires JC, Edger PP, Mayfield-Jones D, Clark LG, Kelchner SA, Duvall MR. Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae). Bmc Plant Biology. 16: 140. PMID 27316745 DOI: 10.1186/S12870-016-0823-3 |
0.512 |
|
| 2016 |
Lane TS, Rempe CS, Davitt J, Staton ME, Peng Y, Soltis DE, Melkonian M, Deyholos M, Leebens-Mack JH, Chase M, Rothfels CJ, Stevenson D, Graham SW, Yu J, Liu T, ... ... Edger PP, et al. Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology. Bmc Biotechnology. 16: 47. PMID 27245738 DOI: 10.1186/S12896-016-0277-6 |
0.498 |
|
| 2016 |
VanBuren R, Bryant D, Bushakra JM, Vining KJ, Edger PP, Rowley ER, Priest HD, Michael TP, Lyons E, Filichkin SA, Dossett M, Finn CE, Bassil NV, Mockler TC. The genome of black raspberry (Rubus occidentalis). The Plant Journal : For Cell and Molecular Biology. PMID 27228578 DOI: 10.1111/Tpj.13215 |
0.722 |
|
| 2016 |
Davin N, Edger PP, Hefer CA, Mizrachi E, Schuetz M, Smets E, Myburg AA, Douglas CJ, Schranz ME, Lens F. Functional network analysis of genes differentially expressed during xylogenesis in soc1ful woody Arabidopsis plants. The Plant Journal : For Cell and Molecular Biology. PMID 26952251 DOI: 10.1111/Tpj.13157 |
0.349 |
|
| 2016 |
Honaas LA, Wafula EK, Wickett NJ, Der JP, Zhang Y, Edger PP, Altman NS, Pires JC, Leebens-Mack JH, dePamphilis CW. Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome. Plos One. 11: e0146062. PMID 26731733 DOI: 10.1371/Journal.Pone.0146062 |
0.53 |
|
| 2015 |
VanBuren R, Bryant D, Edger PP, Tang H, Burgess D, Challabathula D, Spittle K, Hall R, Gu J, Lyons E, Freeling M, Bartels D, Ten Hallers B, Hastie A, Michael TP, et al. Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum. Nature. 527: 508-11. PMID 26560029 DOI: 10.1038/Nature15714 |
0.772 |
|
| 2015 |
Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, ... ... Edger PP, et al. The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics. 47: 1435-42. PMID 26523774 DOI: 10.1038/Ng.3435 |
0.793 |
|
| 2015 |
Huang CH, Sun R, Hu Y, Zeng L, Zhang N, Cai L, Zhang Q, Koch MA, Al-Shehbaz I, Edger PP, Pires JC, Tan DY, Zhong Y, Ma H. Resolution of Brassicaceae phylogeny using nuclear genes uncovers nested radiations and supports convergent morphological evolution. Molecular Biology and Evolution. PMID 26516094 DOI: 10.1093/Molbev/Msv226 |
0.578 |
|
| 2015 |
Mohammadin S, Edger PP, Pires JC, Schranz ME. Positionally-conserved but sequence-diverged: identification of long non-coding RNAs in the Brassicaceae and Cleomaceae. Bmc Plant Biology. 15: 217. PMID 26362138 DOI: 10.1186/S12870-015-0603-5 |
0.561 |
|
| 2015 |
Cotton JL, Wysocki WP, Clark LG, Kelchner SA, Pires JC, Edger PP, Mayfield-Jones D, Duvall MR. Resolving deep relationships of PACMAD grasses: a phylogenomic approach. Bmc Plant Biology. 15: 178. PMID 26160195 DOI: 10.1186/S12870-015-0563-9 |
0.529 |
|
| 2015 |
Edger PP, Heidel-Fischer HM, Bekaert M, Rota J, Glöckner G, Platts AE, Heckel DG, Der JP, Wafula EK, Tang M, Hofberger JA, Smithson A, Hall JC, Blanchette M, Bureau TE, et al. The butterfly plant arms-race escalated by gene and genome duplications. Proceedings of the National Academy of Sciences of the United States of America. PMID 26100883 DOI: 10.1073/Pnas.1503926112 |
0.769 |
|
| 2015 |
Saarela JM, Wysocki WP, Barrett CF, Soreng RJ, Davis JI, Clark LG, Kelchner SA, Pires JC, Edger PP, Mayfield DR, Duvall MR. Plastid phylogenomics of the cool-season grass subfamily: clarification of relationships among early-diverging tribes. Aob Plants. 7. PMID 25940204 DOI: 10.1093/Aobpla/Plv046 |
0.58 |
|
| 2015 |
Augustin MM, Ruzicka DR, Shukla AK, Augustin JM, Starks CM, O'Neil-Johnson M, McKain MR, Evans BS, Barrett MD, Smithson A, Wong GK, Deyholos MK, Edger PP, Pires JC, Leebens-Mack JH, et al. Elucidating steroid alkaloid biosynthesis in Veratrum californicum: production of verazine in Sf9 cells. The Plant Journal : For Cell and Molecular Biology. 82: 991-1003. PMID 25939370 DOI: 10.1111/Tpj.12871 |
0.496 |
|
| 2014 |
Floyd SK, Ryan JG, Conway SJ, Brenner E, Burris KP, Burris JN, Chen T, Edger PP, Graham SW, Leebens-Mack JH, Pires JC, Rothfels CJ, Sigel EM, Stevenson DW, Neal Stewart C, et al. Origin of a novel regulatory module by duplication and degeneration of an ancient plant transcription factor. Molecular Phylogenetics and Evolution. 81: 159-73. PMID 25263420 DOI: 10.1016/J.Ympev.2014.06.017 |
0.565 |
|
| 2014 |
Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, ... ... Edger PP, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science (New York, N.Y.). 345: 950-3. PMID 25146293 DOI: 10.1126/Science.1253435 |
0.767 |
|
| 2014 |
Kagale S, Robinson SJ, Nixon J, Xiao R, Huebert T, Condie J, Kessler D, Clarke WE, Edger PP, Links MG, Sharpe AG, Parkin IA. Polyploid evolution of the Brassicaceae during the Cenozoic era. The Plant Cell. 26: 2777-91. PMID 25035408 DOI: 10.1105/tpc.114.126391 |
0.401 |
|
| 2014 |
Delaux PM, Varala K, Edger PP, Coruzzi GM, Pires JC, Ané JM. Comparative phylogenomics uncovers the impact of symbiotic associations on host genome evolution. Plos Genetics. 10: e1004487. PMID 25032823 DOI: 10.1371/Journal.Pgen.1004487 |
0.648 |
|
| 2014 |
Edger PP, Tang M, Bird KA, Mayfield DR, Conant G, Mummenhoff K, Koch MA, Pires JC. Secondary structure analyses of the nuclear rRNA internal transcribed spacers and assessment of its phylogenetic utility across the Brassicaceae (mustards). Plos One. 9: e101341. PMID 24984034 DOI: 10.1371/Journal.Pone.0101341 |
0.564 |
|
| 2014 |
Grewe F, Edger PP, Keren I, Sultan L, Pires JC, Ostersetzer-Biran O, Mower JP. Comparative analysis of 11 Brassicales mitochondrial genomes and the mitochondrial transcriptome of Brassica oleracea. Mitochondrion. 19: 135-43. PMID 24907441 DOI: 10.1016/J.Mito.2014.05.008 |
0.645 |
|
| 2013 |
Hofberger JA, Lyons E, Edger PP, Chris Pires J, Eric Schranz M. Whole genome and tandem duplicate retention facilitated glucosinolate pathway diversification in the mustard family. Genome Biology and Evolution. 5: 2155-73. PMID 24171911 DOI: 10.1093/Gbe/Evt162 |
0.749 |
|
| 2013 |
Haudry A, Platts AE, Vello E, Hoen DR, Leclercq M, Williamson RJ, Forczek E, Joly-Lopez Z, Steffen JG, Hazzouri KM, Dewar K, Stinchcombe JR, Schoen DJ, Wang X, Schmutz J, ... ... Edger PP, et al. An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions. Nature Genetics. 45: 891-8. PMID 23817568 DOI: 10.1038/Ng.2684 |
0.627 |
|
| 2013 |
Mayfield-Jones D, Washburn JD, Arias T, Edger PP, Pires JC, Conant GC. Watching the grin fade: tracing the effects of polyploidy on different evolutionary time scales. Seminars in Cell & Developmental Biology. 24: 320-31. PMID 23466286 DOI: 10.1016/J.Semcdb.2013.02.002 |
0.532 |
|
| 2012 |
Johnson MT, Carpenter EJ, Tian Z, Bruskiewich R, Burris JN, Carrigan CT, Chase MW, Clarke ND, Covshoff S, Depamphilis CW, Edger PP, Goh F, Graham S, Greiner S, Hibberd JM, et al. Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes. Plos One. 7: e50226. PMID 23185583 DOI: 10.1371/Journal.Pone.0050226 |
0.495 |
|
| 2012 |
Bekaert M, Edger PP, Hudson CM, Pires JC, Conant GC. Metabolic and evolutionary costs of herbivory defense: systems biology of glucosinolate synthesis. The New Phytologist. 196: 596-605. PMID 22943527 DOI: 10.1111/J.1469-8137.2012.04302.X |
0.727 |
|
| 2012 |
Schranz ME, Mohammadin S, Edger PP. Ancient whole genome duplications, novelty and diversification: the WGD Radiation Lag-Time Model. Current Opinion in Plant Biology. 15: 147-53. PMID 22480429 DOI: 10.1016/j.pbi.2012.03.011 |
0.388 |
|
| 2011 |
Bekaert M, Edger PP, Pires JC, Conant GC. Two-phase resolution of polyploidy in the Arabidopsis metabolic network gives rise to relative and absolute dosage constraints. The Plant Cell. 23: 1719-28. PMID 21540436 DOI: 10.1105/Tpc.110.081281 |
0.582 |
|
| 2010 |
Duarte JM, Wall PK, Edger PP, Landherr LL, Ma H, Pires JC, Leebens-Mack J, dePamphilis CW. Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels. Bmc Evolutionary Biology. 10: 61. PMID 20181251 DOI: 10.1186/1471-2148-10-61 |
0.662 |
|
| 2009 |
Edger PP, Pires JC. Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 17: 699-717. PMID 19802709 DOI: 10.1007/S10577-009-9055-9 |
0.592 |
|
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